RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 MAP2P11137 1827 aaKnown RBP13.71□□□□□ -0.22
RTN3-201ENST00000338850 RTL1A6NKG5 1358 aa13.71□□□□□ -0.22
RTN3-201ENST00000338850 MVPQ14764 893 aaKnown RBP13.7□□□□□ -0.22
RTN3-201ENST00000338850 ZKSCAN2Q63HK3 967 aa13.7□□□□□ -0.22
RTN3-201ENST00000338850 RWDD1Q9H446 243 aaPredicted RBP13.7□□□□□ -0.22
RTN3-201ENST00000338850 CASZ1Q86V15 1759 aa13.69□□□□□ -0.22
RTN3-201ENST00000338850 IGHDP01880 384 aa13.69□□□□□ -0.22
RTN3-201ENST00000338850 NEFMP07197 916 aa13.69□□□□□ -0.22
RTN3-201ENST00000338850 PDGFDQ9GZP0 370 aaPredicted RBP13.69□□□□□ -0.22
RTN3-201ENST00000338850 STK32BQ9NY57 414 aa13.69□□□□□ -0.22
RTN3-201ENST00000338850 KIF16BQ96L93 1317 aa13.68□□□□□ -0.22
RTN3-201ENST00000338850 HDAC1Q13547 482 aaPredicted RBP13.68□□□□□ -0.22
RTN3-201ENST00000338850 RRS1Q15050 365 aaKnown RBP13.68□□□□□ -0.22
RTN3-201ENST00000338850 SLC15A2Q16348 729 aa13.68□□□□□ -0.22
RTN3-201ENST00000338850 ALDH1L2Q3SY69 923 aa13.68□□□□□ -0.22
RTN3-201ENST00000338850 DAXXQ9UER7 740 aaPredicted RBP13.68□□□□□ -0.22
RTN3-201ENST00000338850 COG6Q9Y2V7 657 aa13.68□□□□□ -0.22
RTN3-201ENST00000338850 U2AF1L5P0DN76 240 aaPredicted RBP13.67□□□□□ -0.22
RTN3-201ENST00000338850 TMPOP42166 694 aaKnown RBP13.67□□□□□ -0.22
RTN3-201ENST00000338850 U2AF1Q01081 240 aaKnown RBP eCLIP13.67□□□□□ -0.22
RTN3-201ENST00000338850 DDX54Q8TDD1 881 aaKnown RBP13.67□□□□□ -0.22
RTN3-201ENST00000338850 PANK1Q8TE04 598 aa13.67□□□□□ -0.22
RTN3-201ENST00000338850 PPP1R1BQ9UD71 204 aaPredicted RBP13.67□□□□□ -0.22
RTN3-201ENST00000338850 MEGF6O75095 1541 aa13.66□□□□□ -0.22
RTN3-201ENST00000338850 FCHSD2O94868 740 aa13.66□□□□□ -0.22
RTN3-201ENST00000338850 BECN1Q14457 450 aa13.66□□□□□ -0.22
RTN3-201ENST00000338850 CHMP4BQ9H444 224 aaKnown RBP13.66□□□□□ -0.22
RTN3-201ENST00000338850 DDX19BQ9UMR2 479 aa13.66□□□□□ -0.22
RTN3-201ENST00000338850 BTAF1O14981 1849 aa13.66□□□□□ -0.22
RTN3-201ENST00000338850 PAPPAQ13219 1627 aa13.65□□□□□ -0.22
RTN3-201ENST00000338850 DLG5Q8TDM6 1919 aa13.65□□□□□ -0.22
RTN3-201ENST00000338850 ZBTB7AO95365 584 aa13.65□□□□□ -0.22
RTN3-201ENST00000338850 RGS3P49796 1198 aa13.65□□□□□ -0.22
RTN3-201ENST00000338850 NBPF6Q5VWK0 638 aa13.65□□□□□ -0.22
RTN3-201ENST00000338850 DZIP1LQ8IYY4 767 aaKnown RBP13.65□□□□□ -0.22
RTN3-201ENST00000338850 NBPF4Q96M43 638 aa13.65□□□□□ -0.22
RTN3-201ENST00000338850 PTGER2P43116 358 aa13.64□□□□□ -0.23
RTN3-201ENST00000338850 CALD1Q05682 793 aaKnown RBP13.64□□□□□ -0.23
RTN3-201ENST00000338850 ZCRB1Q8TBF4 217 aaKnown RBP13.64□□□□□ -0.23
RTN3-201ENST00000338850 TRIM35Q9UPQ4 493 aa13.64□□□□□ -0.23
RTN3-201ENST00000338850 RGPD2P0DJD1 1756 aa13.63□□□□□ -0.23
RTN3-201ENST00000338850 FLT4P35916 1363 aa13.63□□□□□ -0.23
RTN3-201ENST00000338850 KIF24Q5T7B8 1368 aa13.63□□□□□ -0.23
RTN3-201ENST00000338850 DIAPH1O60610 1272 aaKnown RBP13.63□□□□□ -0.23
RTN3-201ENST00000338850 RLBP1P12271 317 aa13.63□□□□□ -0.23
RTN3-201ENST00000338850 NFKBIBQ15653 356 aa13.63□□□□□ -0.23
RTN3-201ENST00000338850 HSP90AB2PQ58FF8 381 aa13.63□□□□□ -0.23
RTN3-201ENST00000338850 SKAP1Q86WV1 359 aa13.63□□□□□ -0.23
RTN3-201ENST00000338850 USHBP1Q8N6Y0 703 aa13.63□□□□□ -0.23
RTN3-201ENST00000338850 UPF2Q9HAU5 1272 aaKnown RBP13.63□□□□□ -0.23
RTN3-201ENST00000338850 LRRC4BQ9NT99 713 aa13.63□□□□□ -0.23
RTN3-201ENST00000338850 PCDHB15Q9Y5E8 787 aa13.63□□□□□ -0.23
RTN3-201ENST00000338850 SHANK3Q9BYB0 1731 aa13.62□□□□□ -0.23
RTN3-201ENST00000338850 IPO8O15397 1037 aaKnown RBP13.62□□□□□ -0.23
RTN3-201ENST00000338850 PRIM1P49642 420 aaKnown RBP13.62□□□□□ -0.23
RTN3-201ENST00000338850 ZNF827Q17R98 1081 aa13.62□□□□□ -0.23
RTN3-201ENST00000338850 ATF7IPQ6VMQ6 1270 aa13.62□□□□□ -0.23
RTN3-201ENST00000338850 SMC5Q8IY18 1101 aa13.62□□□□□ -0.23
RTN3-201ENST00000338850 TBC1D32Q96NH3 1257 aa13.62□□□□□ -0.23
RTN3-201ENST00000338850 ATF5Q9Y2D1 282 aaPredicted RBP13.62□□□□□ -0.23
RTN3-201ENST00000338850 RRP7AQ9Y3A4 280 aaKnown RBP13.62□□□□□ -0.23
RTN3-201ENST00000338850 LAS1LQ9Y4W2 734 aaKnown RBP13.62□□□□□ -0.23
RTN3-201ENST00000338850 RAPGEF4Q8WZA2 1011 aa13.61□□□□□ -0.23
RTN3-201ENST00000338850 ARHGAP45Q92619 1136 aa13.61□□□□□ -0.23
RTN3-201ENST00000338850 MTFR1LQ9H019 292 aa13.61□□□□□ -0.23
RTN3-201ENST00000338850 PDZRN3Q9UPQ7 1066 aa13.61□□□□□ -0.23
RTN3-201ENST00000338850 SLC27A3Q5K4L6 730 aa13.6□□□□□ -0.23
RTN3-201ENST00000338850 FTSJ3Q8IY81 847 aaKnown RBP13.6□□□□□ -0.23
RTN3-201ENST00000338850 DOT1LQ8TEK3 1739 aa13.6□□□□□ -0.23
RTN3-201ENST00000338850 FRAT1Q92837 279 aaPredicted RBP13.6□□□□□ -0.23
RTN3-201ENST00000338850 AKT1S1Q96B36 256 aa13.6□□□□□ -0.23
RTN3-201ENST00000338850 SYTL4Q96C24 671 aaPredicted RBP13.6□□□□□ -0.23
RTN3-201ENST00000338850 SGIP1Q9BQI5 828 aa13.6□□□□□ -0.23
RTN3-201ENST00000338850 EMILIN1Q9Y6C2 1016 aa13.6□□□□□ -0.23
RTN3-201ENST00000338850 KAT6BQ8WYB5 2073 aa13.59□□□□□ -0.23
RTN3-201ENST00000338850 TATP17735 454 aaPredicted RBP13.59□□□□□ -0.23
RTN3-201ENST00000338850 TNNT2P45379 298 aaPredicted RBP13.59□□□□□ -0.23
RTN3-201ENST00000338850 GSE1Q14687 1217 aa13.59□□□□□ -0.23
RTN3-201ENST00000338850 RSPH6AQ9H0K4 717 aa13.59□□□□□ -0.23
RTN3-201ENST00000338850 SMC4Q9NTJ3 1288 aa13.59□□□□□ -0.23
RTN3-201ENST00000338850 EIF5BO60841 1220 aaKnown RBP13.58□□□□□ -0.24
RTN3-201ENST00000338850 TRIM27P14373 513 aa13.58□□□□□ -0.24
RTN3-201ENST00000338850 EXOSC9Q06265 439 aaKnown RBP13.58□□□□□ -0.24
RTN3-201ENST00000338850 LMOD3Q0VAK6 560 aa13.58□□□□□ -0.24
RTN3-201ENST00000338850 NEUROD2Q15784 382 aa13.58□□□□□ -0.24
RTN3-201ENST00000338850 NCAPD2Q15021 1401 aa13.57□□□□□ -0.24
RTN3-201ENST00000338850 KCNQ4P56696 695 aa13.57□□□□□ -0.24
RTN3-201ENST00000338850 SSH1Q8WYL5 1049 aa13.57□□□□□ -0.24
RTN3-201ENST00000338850 NFE2L2Q16236 605 aa13.56□□□□□ -0.24
RTN3-201ENST00000338850 ZBTB40Q9NUA8 1239 aa13.56□□□□□ -0.24
RTN3-201ENST00000338850 IFT57Q9NWB7 429 aa13.56□□□□□ -0.24
RTN3-201ENST00000338850 PCDH11XQ9BZA7 1347 aa13.56□□□□□ -0.24
RTN3-201ENST00000338850 PCDH11YQ9BZA8 1340 aa13.56□□□□□ -0.24
RTN3-201ENST00000338850 DCAF8L1A6NGE4 600 aa13.55□□□□□ -0.24
RTN3-201ENST00000338850 U2SURPO15042 1029 aaKnown RBP13.55□□□□□ -0.24
RTN3-201ENST00000338850 CYP27B1O15528 508 aa13.55□□□□□ -0.24
RTN3-201ENST00000338850 RIPK4P57078 832 aa13.55□□□□□ -0.24
RTN3-201ENST00000338850 FHDC1Q9C0D6 1143 aaPredicted RBP13.55□□□□□ -0.24
RTN3-201ENST00000338850 POLKQ9UBT6 870 aa13.55□□□□□ -0.24
RTN3-201ENST00000338850 PNPLA7Q6ZV29 1317 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms