RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 DDIT3P35638 169 aa18.05■□□□□ 0.48
TPM3-206ENST00000330188 EIF5BO60841 1220 aaKnown RBP18.04■□□□□ 0.48
TPM3-206ENST00000330188 SLIT3O75094 1523 aa18.04■□□□□ 0.48
TPM3-206ENST00000330188 GNAI3P08754 354 aa18.03■□□□□ 0.48
TPM3-206ENST00000330188 SDSP20132 328 aa18.03■□□□□ 0.48
TPM3-206ENST00000330188 TRPM3Q9HCF6 1732 aaPredicted RBP18.02■□□□□ 0.48
TPM3-206ENST00000330188 ZBTB7CA1YPR0 619 aa18.02■□□□□ 0.47
TPM3-206ENST00000330188 CD2BP2O95400 341 aaKnown RBP18.02■□□□□ 0.47
TPM3-206ENST00000330188 MCM4P33991 863 aa18.02■□□□□ 0.47
TPM3-206ENST00000330188 ORAI2Q96SN7 254 aa18.02■□□□□ 0.47
TPM3-206ENST00000330188 HSP90AB1P08238 724 aaKnown RBP18.01■□□□□ 0.47
TPM3-206ENST00000330188 HDGFL1Q5TGJ6 251 aa18.01■□□□□ 0.47
TPM3-206ENST00000330188 RBM42Q9BTD8 480 aaKnown RBP18.01■□□□□ 0.47
TPM3-206ENST00000330188 OSBPL3Q9H4L5 887 aa18.01■□□□□ 0.47
TPM3-206ENST00000330188 LGR6Q9HBX8 967 aa18.01■□□□□ 0.47
TPM3-206ENST00000330188 NCAPD2Q15021 1401 aa18.01■□□□□ 0.47
TPM3-206ENST00000330188 TUBGCP6Q96RT7 1819 aa18.01■□□□□ 0.47
TPM3-206ENST00000330188 LRRC59Q96AG4 307 aaKnown RBP18.01■□□□□ 0.47
TPM3-206ENST00000330188 EIF4A1P60842 406 aaKnown RBP18■□□□□ 0.47
TPM3-206ENST00000330188 PNMA6EA0A0J9YXQ4 647 aa17.99■□□□□ 0.47
TPM3-206ENST00000330188 GCP02774 474 aa17.99■□□□□ 0.47
TPM3-206ENST00000330188 ATP8B2P98198 1209 aa17.99■□□□□ 0.47
TPM3-206ENST00000330188 ARHGEF25Q86VW2 580 aa17.99■□□□□ 0.47
TPM3-206ENST00000330188 USP26Q9BXU7 913 aa17.99■□□□□ 0.47
TPM3-206ENST00000330188 PHAXQ9H814 394 aaKnown RBP17.99■□□□□ 0.47
TPM3-206ENST00000330188 EXOC6BQ9Y2D4 811 aa17.99■□□□□ 0.47
TPM3-206ENST00000330188 CAMTA1Q9Y6Y1 1673 aa17.99■□□□□ 0.47
TPM3-206ENST00000330188 K7ELQ4 463 aaPredicted RBP17.99■□□□□ 0.47
TPM3-206ENST00000330188 PDE1AP54750 535 aa17.99■□□□□ 0.47
TPM3-206ENST00000330188 XPCQ01831 940 aaPredicted RBP17.98■□□□□ 0.47
TPM3-206ENST00000330188 AKAP4Q5JQC9 854 aa17.98■□□□□ 0.47
TPM3-206ENST00000330188 SALL3Q9BXA9 1300 aa17.98■□□□□ 0.47
TPM3-206ENST00000330188 HOXB7P09629 217 aa17.98■□□□□ 0.47
TPM3-206ENST00000330188 CIZ1Q9ULV3 898 aaPredicted RBP17.98■□□□□ 0.47
TPM3-206ENST00000330188 ZNF530Q6P9A1 599 aaPredicted RBP17.97■□□□□ 0.47
TPM3-206ENST00000330188 CASC1Q6TDU7 716 aa17.97■□□□□ 0.47
TPM3-206ENST00000330188 USP44Q9H0E7 712 aa17.97■□□□□ 0.47
TPM3-206ENST00000330188 LRRFIP2Q9Y608 721 aaKnown RBP17.97■□□□□ 0.47
TPM3-206ENST00000330188 KIF1AQ12756 1690 aa17.97■□□□□ 0.47
TPM3-206ENST00000330188 PXDNQ92626 1479 aa17.97■□□□□ 0.47
TPM3-206ENST00000330188 IBTKQ9P2D0 1353 aaPredicted RBP17.97■□□□□ 0.47
TPM3-206ENST00000330188 PLEKHO1Q53GL0 409 aaPredicted RBP17.96■□□□□ 0.47
TPM3-206ENST00000330188 LRRCC1Q9C099 1032 aa17.96■□□□□ 0.47
TPM3-206ENST00000330188 KCNQ3O43525 872 aa17.96■□□□□ 0.47
TPM3-206ENST00000330188 RABEP1Q15276 862 aa17.95■□□□□ 0.46
TPM3-206ENST00000330188 AMOTQ4VCS5 1084 aa17.95■□□□□ 0.46
TPM3-206ENST00000330188 UBTFL1P0CB47 393 aaPredicted RBP17.95■□□□□ 0.46
TPM3-206ENST00000330188 EIF2S2P20042 333 aaKnown RBP17.95■□□□□ 0.46
TPM3-206ENST00000330188 TEFQ10587 303 aa17.95■□□□□ 0.46
TPM3-206ENST00000330188 MPRIPQ6WCQ1 1025 aa17.94■□□□□ 0.46
TPM3-206ENST00000330188 IL27Q8NEV9 243 aa17.94■□□□□ 0.46
TPM3-206ENST00000330188 ANKRD24Q8TF21 1146 aa17.94■□□□□ 0.46
TPM3-206ENST00000330188 RGPD5Q99666 1765 aa17.94■□□□□ 0.46
TPM3-206ENST00000330188 OVOS2A0A0G2JMS6 1433 aa17.94■□□□□ 0.46
TPM3-206ENST00000330188 C1orf167Q5SNV9 1468 aa17.93■□□□□ 0.46
TPM3-206ENST00000330188 BTBD11A6QL63 1104 aa17.93■□□□□ 0.46
TPM3-206ENST00000330188 CHPF2Q9P2E5 772 aa17.93■□□□□ 0.46
TPM3-206ENST00000330188 RNMTO43148 476 aaKnown RBP17.93■□□□□ 0.46
TPM3-206ENST00000330188 PLEKHG5O94827 1062 aa17.93■□□□□ 0.46
TPM3-206ENST00000330188 LMOD2Q6P5Q4 547 aa17.93■□□□□ 0.46
TPM3-206ENST00000330188 SRCIN1Q9C0H9 1055 aa17.93■□□□□ 0.46
TPM3-206ENST00000330188 BRPF3Q9ULD4 1205 aa17.93■□□□□ 0.46
TPM3-206ENST00000330188 SIPA1L3O60292 1781 aaPredicted RBP17.92■□□□□ 0.46
TPM3-206ENST00000330188 RAB3GAP1Q15042 981 aa17.92■□□□□ 0.46
TPM3-206ENST00000330188 KRT28Q7Z3Y7 464 aa17.92■□□□□ 0.46
TPM3-206ENST00000330188 PROSER2Q86WR7 435 aaPredicted RBP17.92■□□□□ 0.46
TPM3-206ENST00000330188 ALS2Q96Q42 1657 aa17.92■□□□□ 0.46
TPM3-206ENST00000330188 ERC2O15083 957 aa17.92■□□□□ 0.46
TPM3-206ENST00000330188 REC8O95072 547 aa17.92■□□□□ 0.46
TPM3-206ENST00000330188 HSP90AA1P07900 732 aaKnown RBP17.92■□□□□ 0.46
TPM3-206ENST00000330188 MX1P20591 662 aa17.92■□□□□ 0.46
TPM3-206ENST00000330188 TSHZ3Q63HK5 1081 aa17.92■□□□□ 0.46
TPM3-206ENST00000330188 SSH3Q8TE77 659 aa17.92■□□□□ 0.46
TPM3-206ENST00000330188 TNPO1Q92973 898 aaKnown RBP17.92■□□□□ 0.46
TPM3-206ENST00000330188 CHMP4AQ9BY43 222 aa17.92■□□□□ 0.46
TPM3-206ENST00000330188 FOXD4L1Q9NU39 408 aa17.92■□□□□ 0.46
TPM3-206ENST00000330188 AXIN2Q9Y2T1 843 aa17.92■□□□□ 0.46
TPM3-206ENST00000330188 MST1RQ04912 1400 aa17.91■□□□□ 0.46
TPM3-206ENST00000330188 DDX11L8A8MPP1 907 aa17.91■□□□□ 0.46
TPM3-206ENST00000330188 C1orf141Q5JVX7 400 aa17.91■□□□□ 0.46
TPM3-206ENST00000330188 ADAMTS7Q9UKP4 1686 aa17.9■□□□□ 0.46
TPM3-206ENST00000330188 TRAK2O60296 914 aa17.9■□□□□ 0.46
TPM3-206ENST00000330188 POLA2Q14181 598 aa17.9■□□□□ 0.46
TPM3-206ENST00000330188 BEND3Q5T5X7 828 aa17.9■□□□□ 0.46
TPM3-206ENST00000330188 DNAAF4Q8WXU2 420 aa17.9■□□□□ 0.46
TPM3-206ENST00000330188 STAP2Q9UGK3 403 aa17.9■□□□□ 0.46
TPM3-206ENST00000330188 LMTK3Q96Q04 1460 aa17.89■□□□□ 0.45
TPM3-206ENST00000330188 PI4KAP2A4QPH2 592 aa17.89■□□□□ 0.45
TPM3-206ENST00000330188 PI4KAP1Q8N8J0 262 aa17.89■□□□□ 0.45
TPM3-206ENST00000330188 ADCY9O60503 1353 aa17.88■□□□□ 0.45
TPM3-206ENST00000330188 ANXA1P04083 346 aa17.88■□□□□ 0.45
TPM3-206ENST00000330188 PPP1R42Q7Z4L9 355 aa17.88■□□□□ 0.45
TPM3-206ENST00000330188 C19orf44Q9H6X5 657 aa17.88■□□□□ 0.45
TPM3-206ENST00000330188 HEG1Q9ULI3 1381 aa17.88■□□□□ 0.45
TPM3-206ENST00000330188 AOX1Q06278 1338 aa17.87■□□□□ 0.45
TPM3-206ENST00000330188 NBPF7P0C2Y1 421 aaPredicted RBP17.87■□□□□ 0.45
TPM3-206ENST00000330188 RAB11FIP3O75154 756 aa17.86■□□□□ 0.45
TPM3-206ENST00000330188 GBP4Q96PP9 640 aa17.86■□□□□ 0.45
TPM3-206ENST00000330188 ESYT1Q9BSJ8 1104 aa17.86■□□□□ 0.45
TPM3-206ENST00000330188 DBF4Q9UBU7 674 aaPredicted RBP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms