RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 DLC1Q96QB1 1528 aa24.29■■□□□ 1.48
CRLF3-201ENST00000324238 TMEM63CQ9P1W3 806 aa24.29■■□□□ 1.48
CRLF3-201ENST00000324238 HMMRO75330 724 aa24.29■■□□□ 1.48
CRLF3-201ENST00000324238 CCDC173Q0VFZ6 552 aa24.29■■□□□ 1.48
CRLF3-201ENST00000324238 PTPRCP08575 1304 aa24.29■■□□□ 1.48
CRLF3-201ENST00000324238 IL25Q9H293 177 aa24.28■■□□□ 1.48
CRLF3-201ENST00000324238 NRXN3Q9Y4C0 1643 aa24.28■■□□□ 1.48
CRLF3-201ENST00000324238 PTMSP20962 102 aa24.28■■□□□ 1.48
CRLF3-201ENST00000324238 CLEC17AQ6ZS10 378 aa24.28■■□□□ 1.48
CRLF3-201ENST00000324238 GNAI2P04899 355 aa24.27■■□□□ 1.48
CRLF3-201ENST00000324238 NUTM1Q86Y26 1132 aa24.27■■□□□ 1.48
CRLF3-201ENST00000324238 LRRFIP2Q9Y608 721 aaKnown RBP24.27■■□□□ 1.48
CRLF3-201ENST00000324238 CRB1P82279 1406 aa24.25■■□□□ 1.47
CRLF3-201ENST00000324238 HSP90AA2PQ14568 343 aaPredicted RBP24.25■■□□□ 1.47
CRLF3-201ENST00000324238 STK31Q9BXU1 1019 aa24.25■■□□□ 1.47
CRLF3-201ENST00000324238 KIF24Q5T7B8 1368 aa24.25■■□□□ 1.47
CRLF3-201ENST00000324238 PLEKHG3A1L390 1219 aa24.24■■□□□ 1.47
CRLF3-201ENST00000324238 FLIIQ13045 1269 aa24.24■■□□□ 1.47
CRLF3-201ENST00000324238 KIAA1211Q6ZU35 1233 aa24.24■■□□□ 1.47
CRLF3-201ENST00000324238 PPP1R9BQ96SB3 815 aa24.24■■□□□ 1.47
CRLF3-201ENST00000324238 ADAMTS13Q76LX8 1427 aa24.24■■□□□ 1.47
CRLF3-201ENST00000324238 EIF2S2P20042 333 aaKnown RBP24.24■■□□□ 1.47
CRLF3-201ENST00000324238 ESYT1Q9BSJ8 1104 aa24.24■■□□□ 1.47
CRLF3-201ENST00000324238 MX1P20591 662 aa24.24■■□□□ 1.47
CRLF3-201ENST00000324238 ABTB2Q8N961 1025 aa24.24■■□□□ 1.47
CRLF3-201ENST00000324238 LRRCC1Q9C099 1032 aa24.24■■□□□ 1.47
CRLF3-201ENST00000324238 ZSCAN30Q86W11 494 aa24.23■■□□□ 1.47
CRLF3-201ENST00000324238 CWC22Q9HCG8 908 aaKnown RBP24.23■■□□□ 1.47
CRLF3-201ENST00000324238 USP6P35125 1406 aa24.23■■□□□ 1.47
CRLF3-201ENST00000324238 MSNP26038 577 aaKnown RBP24.22■■□□□ 1.47
CRLF3-201ENST00000324238 HAP1P54257 671 aaPredicted RBP24.22■■□□□ 1.47
CRLF3-201ENST00000324238 ZNF445P59923 1031 aa24.22■■□□□ 1.47
CRLF3-201ENST00000324238 XPCQ01831 940 aaPredicted RBP24.22■■□□□ 1.47
CRLF3-201ENST00000324238 PTPRUQ92729 1446 aa24.22■■□□□ 1.47
CRLF3-201ENST00000324238 KIAA0232Q92628 1395 aa24.22■■□□□ 1.47
CRLF3-201ENST00000324238 SETD1AO15047 1707 aaKnown RBP24.22■■□□□ 1.47
CRLF3-201ENST00000324238 CCT4P50991 539 aaKnown RBP24.21■■□□□ 1.47
CRLF3-201ENST00000324238 AGLP35573 1532 aa24.21■■□□□ 1.47
CRLF3-201ENST00000324238 RIMS1Q86UR5 1692 aaKnown RBP24.21■■□□□ 1.47
CRLF3-201ENST00000324238 PHAXQ9H814 394 aaKnown RBP24.21■■□□□ 1.47
CRLF3-201ENST00000324238 ANXA1P04083 346 aa24.2■■□□□ 1.46
CRLF3-201ENST00000324238 KCNA6P17658 529 aa24.2■■□□□ 1.46
CRLF3-201ENST00000324238 CHMLP26374 656 aa24.2■■□□□ 1.46
CRLF3-201ENST00000324238 RBM10P98175 930 aaKnown RBP24.19■■□□□ 1.46
CRLF3-201ENST00000324238 LMOD2Q6P5Q4 547 aa24.18■■□□□ 1.46
CRLF3-201ENST00000324238 GADD45BO75293 160 aaPredicted RBP24.18■■□□□ 1.46
CRLF3-201ENST00000324238 SIRT1Q96EB6 747 aa24.18■■□□□ 1.46
CRLF3-201ENST00000324238 R3HCC1Q9Y3T6 440 aaKnown RBP24.17■■□□□ 1.46
CRLF3-201ENST00000324238 IL17REQ8NFR9 667 aa24.16■■□□□ 1.46
CRLF3-201ENST00000324238 ARID3AQ99856 593 aa24.16■■□□□ 1.46
CRLF3-201ENST00000324238 CPA1P15085 419 aa24.16■■□□□ 1.46
CRLF3-201ENST00000324238 DDX54Q8TDD1 881 aaKnown RBP24.16■■□□□ 1.46
CRLF3-201ENST00000324238 OVOS2A0A0J9YW53 1432 aa24.16■■□□□ 1.46
CRLF3-201ENST00000324238 OVOS2Q6IE36 1432 aa24.16■■□□□ 1.46
CRLF3-201ENST00000324238 OSBPL3Q9H4L5 887 aa24.15■■□□□ 1.46
CRLF3-201ENST00000324238 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.15■■□□□ 1.46
CRLF3-201ENST00000324238 USP44Q9H0E7 712 aa24.15■■□□□ 1.46
CRLF3-201ENST00000324238 SURF6O75683 361 aaKnown RBP24.15■■□□□ 1.46
CRLF3-201ENST00000324238 ATP8B2P98198 1209 aa24.15■■□□□ 1.46
CRLF3-201ENST00000324238 EIF2AK3Q9NZJ5 1116 aaKnown RBP24.14■■□□□ 1.46
CRLF3-201ENST00000324238 PEAK1Q9H792 1746 aa24.14■■□□□ 1.46
CRLF3-201ENST00000324238 GNAT3A8MTJ3 354 aa24.13■■□□□ 1.45
CRLF3-201ENST00000324238 SALL3Q9BXA9 1300 aa24.13■■□□□ 1.45
CRLF3-201ENST00000324238 TECPR2O15040 1411 aa24.13■■□□□ 1.45
CRLF3-201ENST00000324238 C3P01024 1663 aa24.12■■□□□ 1.45
CRLF3-201ENST00000324238 CCDC30Q5VVM6 783 aa24.12■■□□□ 1.45
CRLF3-201ENST00000324238 VSIG10Q8N0Z9 540 aa24.12■■□□□ 1.45
CRLF3-201ENST00000324238 HOXC9P31274 260 aa24.12■■□□□ 1.45
CRLF3-201ENST00000324238 FLT4P35916 1363 aa24.12■■□□□ 1.45
CRLF3-201ENST00000324238 BRD1O95696 1058 aa24.12■■□□□ 1.45
CRLF3-201ENST00000324238 UBTFL1P0CB47 393 aaPredicted RBP24.12■■□□□ 1.45
CRLF3-201ENST00000324238 LRSAM1Q6UWE0 723 aa24.12■■□□□ 1.45
CRLF3-201ENST00000324238 IBTKQ9P2D0 1353 aaPredicted RBP24.11■■□□□ 1.45
CRLF3-201ENST00000324238 GNAI3P08754 354 aa24.11■■□□□ 1.45
CRLF3-201ENST00000324238 MCCP23508 829 aa24.11■■□□□ 1.45
CRLF3-201ENST00000324238 PPP1R42Q7Z4L9 355 aa24.11■■□□□ 1.45
CRLF3-201ENST00000324238 LGR6Q9HBX8 967 aa24.11■■□□□ 1.45
CRLF3-201ENST00000324238 SETD1BQ9UPS6 1966 aaKnown RBP24.11■■□□□ 1.45
CRLF3-201ENST00000324238 MON2Q7Z3U7 1717 aa24.11■■□□□ 1.45
CRLF3-201ENST00000324238 CEP170BQ9Y4F5 1589 aaPredicted RBP24.11■■□□□ 1.45
CRLF3-201ENST00000324238 KCNQ3O43525 872 aa24.1■■□□□ 1.45
CRLF3-201ENST00000324238 SPG7Q9UQ90 795 aa24.1■■□□□ 1.45
CRLF3-201ENST00000324238 NBPF7P0C2Y1 421 aaPredicted RBP24.09■■□□□ 1.45
CRLF3-201ENST00000324238 HDGFL1Q5TGJ6 251 aa24.09■■□□□ 1.45
CRLF3-201ENST00000324238 LRRC59Q96AG4 307 aaKnown RBP24.09■■□□□ 1.45
CRLF3-201ENST00000324238 PLEKHG1Q9ULL1 1385 aa24.08■■□□□ 1.45
CRLF3-201ENST00000324238 REREQ9P2R6 1566 aa24.08■■□□□ 1.44
CRLF3-201ENST00000324238 USP48Q86UV5 1035 aa24.08■■□□□ 1.44
CRLF3-201ENST00000324238 ZNF830Q96NB3 372 aaPredicted RBP24.08■■□□□ 1.44
CRLF3-201ENST00000324238 OFD1O75665 1012 aa24.07■■□□□ 1.44
CRLF3-201ENST00000324238 CWC27Q6UX04 472 aaKnown RBP24.07■■□□□ 1.44
CRLF3-201ENST00000324238 ITSN1Q15811 1721 aa24.07■■□□□ 1.44
CRLF3-201ENST00000324238 SBNO1A3KN83 1393 aa24.07■■□□□ 1.44
CRLF3-201ENST00000324238 SRGAP3O43295 1099 aa24.07■■□□□ 1.44
CRLF3-201ENST00000324238 RASEFQ8IZ41 740 aa24.07■■□□□ 1.44
CRLF3-201ENST00000324238 IGSF1Q8N6C5 1336 aa24.06■■□□□ 1.44
CRLF3-201ENST00000324238 PTMAP06454 111 aaKnown RBP24.05■■□□□ 1.44
CRLF3-201ENST00000324238 CUL4AQ13619 759 aa24.05■■□□□ 1.44
CRLF3-201ENST00000324238 PDLIM2Q96JY6 352 aa24.05■■□□□ 1.44
CRLF3-201ENST00000324238 USP31Q70CQ4 1352 aa24.05■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms