RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 SURF6O75683 361 aaKnown RBP11.59□□□□□ -0.55
COL6A3-201ENST00000295550 PAF1Q8N7H5 531 aa11.59□□□□□ -0.55
COL6A3-201ENST00000295550 TMCO3Q6UWJ1 677 aa11.59□□□□□ -0.55
COL6A3-201ENST00000295550 WDR7Q9Y4E6 1490 aa11.59□□□□□ -0.55
COL6A3-201ENST00000295550 GOLGA6L10A0A0M3HER8 536 aa11.59□□□□□ -0.55
COL6A3-201ENST00000295550 KDM4AO75164 1064 aa11.59□□□□□ -0.55
COL6A3-201ENST00000295550 PREX2Q70Z35 1606 aa11.59□□□□□ -0.55
COL6A3-201ENST00000295550 ANKRD1Q15327 319 aa11.59□□□□□ -0.55
COL6A3-201ENST00000295550 ATP7AQ04656 1500 aa11.59□□□□□ -0.55
COL6A3-201ENST00000295550 FYB1O15117 783 aa11.59□□□□□ -0.55
COL6A3-201ENST00000295550 KRT18P05783 430 aaKnown RBP11.59□□□□□ -0.55
COL6A3-201ENST00000295550 TMEM132AQ24JP5 1023 aa11.58□□□□□ -0.56
COL6A3-201ENST00000295550 NLRP6P59044 892 aa11.58□□□□□ -0.56
COL6A3-201ENST00000295550 GON4LQ3T8J9 2241 aa11.58□□□□□ -0.56
COL6A3-201ENST00000295550 PDIA4P13667 645 aaKnown RBP11.58□□□□□ -0.56
COL6A3-201ENST00000295550 BMP2KLQ5H9B9 411 aa11.58□□□□□ -0.56
COL6A3-201ENST00000295550 CFAP74Q9C0B2 1584 aa11.58□□□□□ -0.56
COL6A3-201ENST00000295550 SPATA31E1Q6ZUB1 1445 aa11.58□□□□□ -0.56
COL6A3-201ENST00000295550 ME1P48163 572 aa11.58□□□□□ -0.56
COL6A3-201ENST00000295550 SAMD1Q6SPF0 538 aaPredicted RBP11.58□□□□□ -0.56
COL6A3-201ENST00000295550 CCDC91Q7Z6B0 441 aa11.58□□□□□ -0.56
COL6A3-201ENST00000295550 CALCOCO1Q9P1Z2 691 aa11.58□□□□□ -0.56
COL6A3-201ENST00000295550 CYP46A1Q9Y6A2 500 aa11.58□□□□□ -0.56
COL6A3-201ENST00000295550 SKAP1Q86WV1 359 aa11.58□□□□□ -0.56
COL6A3-201ENST00000295550 NF2P35240 595 aa11.58□□□□□ -0.56
COL6A3-201ENST00000295550 HDAC1Q13547 482 aaPredicted RBP11.58□□□□□ -0.56
COL6A3-201ENST00000295550 NPC1L1Q9UHC9 1359 aa11.57□□□□□ -0.56
COL6A3-201ENST00000295550 WASHC4Q2M389 1173 aa11.57□□□□□ -0.56
COL6A3-201ENST00000295550 CYB5RLQ6IPT4 315 aa11.57□□□□□ -0.56
COL6A3-201ENST00000295550 GPATCH11Q8N954 259 aa11.57□□□□□ -0.56
COL6A3-201ENST00000295550 CDC42BPAQ5VT25 1732 aa11.57□□□□□ -0.56
COL6A3-201ENST00000295550 MAP9Q49MG5 647 aa11.57□□□□□ -0.56
COL6A3-201ENST00000295550 RBM25P49756 843 aaKnown RBP11.57□□□□□ -0.56
COL6A3-201ENST00000295550 CGNQ9P2M7 1197 aaKnown RBP11.57□□□□□ -0.56
COL6A3-201ENST00000295550 C14orf93Q9H972 538 aaKnown RBP11.57□□□□□ -0.56
COL6A3-201ENST00000295550 ZFYVE9O95405 1425 aa11.57□□□□□ -0.56
COL6A3-201ENST00000295550 TXNDC2Q86VQ3 553 aa11.57□□□□□ -0.56
COL6A3-201ENST00000295550 RIC3Q7Z5B4 369 aa11.57□□□□□ -0.56
COL6A3-201ENST00000295550 DACH1Q9UI36 760 aa11.57□□□□□ -0.56
COL6A3-201ENST00000295550 HDGFL1Q5TGJ6 251 aa11.56□□□□□ -0.56
COL6A3-201ENST00000295550 CEP63Q96MT8 703 aa11.56□□□□□ -0.56
COL6A3-201ENST00000295550 ATP2B1P20020 1258 aa11.56□□□□□ -0.56
COL6A3-201ENST00000295550 IBSPP21815 317 aaPredicted RBP11.56□□□□□ -0.56
COL6A3-201ENST00000295550 KIAA1328Q86T90 577 aa11.56□□□□□ -0.56
COL6A3-201ENST00000295550 PLEKHO1Q53GL0 409 aaPredicted RBP11.56□□□□□ -0.56
COL6A3-201ENST00000295550 CRACR2AQ9BSW2 395 aa11.56□□□□□ -0.56
COL6A3-201ENST00000295550 TESK2Q96S53 571 aa11.56□□□□□ -0.56
COL6A3-201ENST00000295550 ABTB2Q8N961 1025 aa11.56□□□□□ -0.56
COL6A3-201ENST00000295550 FAM107BQ9H098 131 aa11.56□□□□□ -0.56
COL6A3-201ENST00000295550 C8orf34Q49A92 452 aa11.56□□□□□ -0.56
COL6A3-201ENST00000295550 KIF2AO00139 706 aaPredicted RBP11.55□□□□□ -0.56
COL6A3-201ENST00000295550 RAPGEF4Q8WZA2 1011 aa11.55□□□□□ -0.56
COL6A3-201ENST00000295550 DENND4BO75064 1496 aaPredicted RBP11.55□□□□□ -0.56
COL6A3-201ENST00000295550 MX1P20591 662 aa11.55□□□□□ -0.56
COL6A3-201ENST00000295550 RRS1Q15050 365 aaKnown RBP11.55□□□□□ -0.56
COL6A3-201ENST00000295550 IPO4Q8TEX9 1081 aaKnown RBP11.55□□□□□ -0.56
COL6A3-201ENST00000295550 PTPRCP08575 1304 aa11.55□□□□□ -0.56
COL6A3-201ENST00000295550 RNF123Q5XPI4 1314 aa11.55□□□□□ -0.56
COL6A3-201ENST00000295550 ZSCAN30Q86W11 494 aa11.55□□□□□ -0.56
COL6A3-201ENST00000295550 UBXN4Q92575 508 aa11.55□□□□□ -0.56
COL6A3-201ENST00000295550 ZSCAN31Q96LW9 406 aaPredicted RBP11.55□□□□□ -0.56
COL6A3-201ENST00000295550 SEPT11Q9NVA2 429 aaKnown RBP11.55□□□□□ -0.56
COL6A3-201ENST00000295550 CEP57L1Q8IYX8 460 aa11.54□□□□□ -0.56
COL6A3-201ENST00000295550 CCDC148Q8NFR7 591 aa11.54□□□□□ -0.56
COL6A3-201ENST00000295550 NEUROD6Q96NK8 337 aa11.54□□□□□ -0.56
COL6A3-201ENST00000295550 CFAP45Q9UL16 551 aa11.54□□□□□ -0.56
COL6A3-201ENST00000295550 TNPO1Q92973 898 aaKnown RBP11.54□□□□□ -0.56
COL6A3-201ENST00000295550 IGHDP01880 384 aa11.54□□□□□ -0.56
COL6A3-201ENST00000295550 MTMR7Q9Y216 660 aa11.54□□□□□ -0.56
COL6A3-201ENST00000295550 NUCB1Q02818 461 aa11.54□□□□□ -0.56
COL6A3-201ENST00000295550 SPATA24Q86W54 205 aa11.54□□□□□ -0.56
COL6A3-201ENST00000295550 NUTM2GQ5VZR2 741 aa11.54□□□□□ -0.56
COL6A3-201ENST00000295550 TTC21BQ7Z4L5 1316 aa11.53□□□□□ -0.56
COL6A3-201ENST00000295550 RAPGEF3O95398 923 aa11.53□□□□□ -0.56
COL6A3-201ENST00000295550 ARHGAP29Q52LW3 1261 aa11.53□□□□□ -0.56
COL6A3-201ENST00000295550 ABCC10Q5T3U5 1492 aa11.53□□□□□ -0.56
COL6A3-201ENST00000295550 CBX1P83916 185 aa11.53□□□□□ -0.56
COL6A3-201ENST00000295550 SLC3A2P08195 630 aaKnown RBP11.53□□□□□ -0.56
COL6A3-201ENST00000295550 MAP2K1Q02750 393 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-201ENST00000295550 EPB41L2O43491 1005 aaKnown RBP11.53□□□□□ -0.56
COL6A3-201ENST00000295550 KRT85P78386 507 aa11.53□□□□□ -0.56
COL6A3-201ENST00000295550 ZHX1Q9UKY1 873 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-201ENST00000295550 KDM5DQ9BY66 1539 aa11.53□□□□□ -0.56
COL6A3-201ENST00000295550 POGZQ7Z3K3 1410 aa11.53□□□□□ -0.56
COL6A3-201ENST00000295550 ABCC1P33527 1531 aa11.53□□□□□ -0.56
COL6A3-201ENST00000295550 ARHGAP45Q92619 1136 aa11.53□□□□□ -0.56
COL6A3-201ENST00000295550 TTC37Q6PGP7 1564 aa11.53□□□□□ -0.56
COL6A3-201ENST00000295550 PRDM15P57071 1507 aaPredicted RBP11.52□□□□□ -0.56
COL6A3-201ENST00000295550 RAB11FIP3O75154 756 aa11.52□□□□□ -0.56
COL6A3-201ENST00000295550 IKQ13123 557 aaPredicted RBP11.52□□□□□ -0.56
COL6A3-201ENST00000295550 LRRIQ1Q96JM4 1722 aa11.52□□□□□ -0.57
COL6A3-201ENST00000295550 RNF187Q5TA31 235 aaPredicted RBP11.52□□□□□ -0.57
COL6A3-201ENST00000295550 MCM3P25205 808 aa11.52□□□□□ -0.57
COL6A3-201ENST00000295550 AIMP1Q12904 312 aaKnown RBP11.52□□□□□ -0.57
COL6A3-201ENST00000295550 TANGO6Q9C0B7 1094 aa11.52□□□□□ -0.57
COL6A3-201ENST00000295550 JAKMIP3Q5VZ66 844 aa11.52□□□□□ -0.57
COL6A3-201ENST00000295550 TBC1D9Q6ZT07 1266 aa11.52□□□□□ -0.57
COL6A3-201ENST00000295550 NUDT16Q96DE0 195 aaKnown RBP11.52□□□□□ -0.57
COL6A3-201ENST00000295550 MICALCLQ6ZW33 695 aa11.51□□□□□ -0.57
COL6A3-201ENST00000295550 GBP3Q9H0R5 595 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms