RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 DDX17Q92841 729 aaKnown RBP20.44■□□□□ 0.86
VPS54-201ENST00000272322 SNX21Q969T3 373 aa20.44■□□□□ 0.86
VPS54-201ENST00000272322 GBP4Q96PP9 640 aa20.44■□□□□ 0.86
VPS54-201ENST00000272322 CHPF2Q9P2E5 772 aa20.44■□□□□ 0.86
VPS54-201ENST00000272322 ATP10DQ9P241 1426 aa20.44■□□□□ 0.86
VPS54-201ENST00000272322 DDX54Q8TDD1 881 aaKnown RBP20.44■□□□□ 0.86
VPS54-201ENST00000272322 DDX49Q9Y6V7 483 aaKnown RBP20.44■□□□□ 0.86
VPS54-201ENST00000272322 RIMS1Q86UR5 1692 aaKnown RBP20.44■□□□□ 0.86
VPS54-201ENST00000272322 SBNO1A3KN83 1393 aa20.43■□□□□ 0.86
VPS54-201ENST00000272322 TEFQ10587 303 aa20.43■□□□□ 0.86
VPS54-201ENST00000272322 OS9Q13438 667 aaPredicted RBP20.43■□□□□ 0.86
VPS54-201ENST00000272322 GAS2L3Q86XJ1 694 aa20.43■□□□□ 0.86
VPS54-201ENST00000272322 LRRCC1Q9C099 1032 aa20.43■□□□□ 0.86
VPS54-201ENST00000272322 PI4KAP2A4QPH2 592 aa20.43■□□□□ 0.86
VPS54-201ENST00000272322 NBPF7P0C2Y1 421 aaPredicted RBP20.43■□□□□ 0.86
VPS54-201ENST00000272322 PIP4K2AP48426 406 aaPredicted RBP20.43■□□□□ 0.86
VPS54-201ENST00000272322 PI4KAP1Q8N8J0 262 aa20.43■□□□□ 0.86
VPS54-201ENST00000272322 CEP170BQ9Y4F5 1589 aaPredicted RBP20.43■□□□□ 0.86
VPS54-201ENST00000272322 IGSF1Q8N6C5 1336 aa20.42■□□□□ 0.86
VPS54-201ENST00000272322 ZNF530Q6P9A1 599 aaPredicted RBP20.42■□□□□ 0.86
VPS54-201ENST00000272322 TTC21AQ8NDW8 1320 aa20.42■□□□□ 0.86
VPS54-201ENST00000272322 VIRMAQ69YN4 1812 aaKnown RBP20.42■□□□□ 0.86
VPS54-201ENST00000272322 TECPR2O15040 1411 aa20.42■□□□□ 0.86
VPS54-201ENST00000272322 L1TD1Q5T7N2 865 aaKnown RBP20.41■□□□□ 0.86
VPS54-201ENST00000272322 DDX11L8A8MPP1 907 aa20.41■□□□□ 0.86
VPS54-201ENST00000272322 SRGAP3O43295 1099 aa20.41■□□□□ 0.86
VPS54-201ENST00000272322 JARID2Q92833 1246 aaPredicted RBP20.41■□□□□ 0.86
VPS54-201ENST00000272322 USP44Q9H0E7 712 aa20.41■□□□□ 0.86
VPS54-201ENST00000272322 PALD1Q9ULE6 856 aa20.41■□□□□ 0.86
VPS54-201ENST00000272322 PPP1R42Q7Z4L9 355 aa20.4■□□□□ 0.86
VPS54-201ENST00000272322 RRAGDQ9NQL2 400 aaPredicted RBP20.4■□□□□ 0.86
VPS54-201ENST00000272322 MX1P20591 662 aa20.4■□□□□ 0.86
VPS54-201ENST00000272322 RAB3GAP1Q15042 981 aa20.4■□□□□ 0.86
VPS54-201ENST00000272322 SETD1AO15047 1707 aaKnown RBP20.4■□□□□ 0.86
VPS54-201ENST00000272322 ERC2O15083 957 aa20.39■□□□□ 0.86
VPS54-201ENST00000272322 AK9Q5TCS8 1911 aa20.39■□□□□ 0.85
VPS54-201ENST00000272322 KIAA0232Q92628 1395 aa20.39■□□□□ 0.85
VPS54-201ENST00000272322 RABEP1Q15276 862 aa20.39■□□□□ 0.85
VPS54-201ENST00000272322 IL25Q9H293 177 aa20.38■□□□□ 0.85
VPS54-201ENST00000272322 CCDC9Q9Y3X0 531 aaKnown RBP20.38■□□□□ 0.85
VPS54-201ENST00000272322 BTBD11A6QL63 1104 aa20.37■□□□□ 0.85
VPS54-201ENST00000272322 PRPF40AO75400 957 aaKnown RBP20.37■□□□□ 0.85
VPS54-201ENST00000272322 REC8O95072 547 aa20.37■□□□□ 0.85
VPS54-201ENST00000272322 GNAI3P08754 354 aa20.37■□□□□ 0.85
VPS54-201ENST00000272322 CAVIN1Q6NZI2 390 aaKnown RBP20.37■□□□□ 0.85
VPS54-201ENST00000272322 USP31Q70CQ4 1352 aa20.37■□□□□ 0.85
VPS54-201ENST00000272322 ST18O60284 1047 aa20.37■□□□□ 0.85
VPS54-201ENST00000272322 SLC39A6Q13433 755 aa20.37■□□□□ 0.85
VPS54-201ENST00000272322 BAG4O95429 457 aaKnown RBP20.36■□□□□ 0.85
VPS54-201ENST00000272322 GRPEL1Q9HAV7 217 aa20.36■□□□□ 0.85
VPS54-201ENST00000272322 PA2G4Q9UQ80 394 aaKnown RBP20.36■□□□□ 0.85
VPS54-201ENST00000272322 PROSER3Q2NL68 480 aa20.36■□□□□ 0.85
VPS54-201ENST00000272322 CWF19L2Q2TBE0 894 aaKnown RBP20.36■□□□□ 0.85
VPS54-201ENST00000272322 SRCIN1Q9C0H9 1055 aa20.36■□□□□ 0.85
VPS54-201ENST00000272322 RBM27Q9P2N5 1060 aaKnown RBP20.36■□□□□ 0.85
VPS54-201ENST00000272322 ARHGEF10O15013 1369 aa20.36■□□□□ 0.85
VPS54-201ENST00000272322 PEAK1Q9H792 1746 aa20.35■□□□□ 0.85
VPS54-201ENST00000272322 GOLGA6L22H0YM25 854 aa20.35■□□□□ 0.85
VPS54-201ENST00000272322 DDIT3P35638 169 aa20.35■□□□□ 0.85
VPS54-201ENST00000272322 ATP8B2P98198 1209 aa20.35■□□□□ 0.85
VPS54-201ENST00000272322 ANKLE2Q86XL3 938 aa20.35■□□□□ 0.85
VPS54-201ENST00000272322 CABLES1Q8TDN4 633 aa20.35■□□□□ 0.85
VPS54-201ENST00000272322 GDPD2Q9HCC8 539 aa20.35■□□□□ 0.85
VPS54-201ENST00000272322 KNDC1Q76NI1 1749 aa20.34■□□□□ 0.85
VPS54-201ENST00000272322 CPA1P15085 419 aa20.34■□□□□ 0.85
VPS54-201ENST00000272322 SIL1Q9H173 461 aa20.34■□□□□ 0.85
VPS54-201ENST00000272322 MAP3K5Q99683 1374 aa20.34■□□□□ 0.85
VPS54-201ENST00000272322 MYL6BP14649 208 aa20.33■□□□□ 0.85
VPS54-201ENST00000272322 SPG7Q9UQ90 795 aa20.33■□□□□ 0.85
VPS54-201ENST00000272322 C9orf78Q9NZ63 289 aaPredicted RBP20.33■□□□□ 0.85
VPS54-201ENST00000272322 CWC27Q6UX04 472 aaKnown RBP20.33■□□□□ 0.84
VPS54-201ENST00000272322 C3P01024 1663 aa20.32■□□□□ 0.84
VPS54-201ENST00000272322 C1orf141Q5JVX7 400 aa20.32■□□□□ 0.84
VPS54-201ENST00000272322 AXIN2Q9Y2T1 843 aa20.32■□□□□ 0.84
VPS54-201ENST00000272322 ITSN1Q15811 1721 aa20.31■□□□□ 0.84
VPS54-201ENST00000272322 RGPD8O14715 1765 aaPredicted RBP20.31■□□□□ 0.84
VPS54-201ENST00000272322 GCP02774 474 aa20.31■□□□□ 0.84
VPS54-201ENST00000272322 NLRP2Q9NX02 1062 aa20.31■□□□□ 0.84
VPS54-201ENST00000272322 SOS1Q07889 1333 aaPredicted RBP20.31■□□□□ 0.84
VPS54-201ENST00000272322 KLHDC4Q8TBB5 520 aa20.3■□□□□ 0.84
VPS54-201ENST00000272322 ESYT1Q9BSJ8 1104 aa20.3■□□□□ 0.84
VPS54-201ENST00000272322 SSH2Q76I76 1423 aa20.3■□□□□ 0.84
VPS54-201ENST00000272322 EIF4A1P60842 406 aaKnown RBP20.3■□□□□ 0.84
VPS54-201ENST00000272322 UBR1Q8IWV7 1749 aa20.3■□□□□ 0.84
VPS54-201ENST00000272322 CHMLP26374 656 aa20.29■□□□□ 0.84
VPS54-201ENST00000272322 IP6K1Q92551 441 aa20.29■□□□□ 0.84
VPS54-201ENST00000272322 TMX3Q96JJ7 454 aa20.29■□□□□ 0.84
VPS54-201ENST00000272322 DNAAF4Q8WXU2 420 aa20.29■□□□□ 0.84
VPS54-201ENST00000272322 MON2Q7Z3U7 1717 aa20.29■□□□□ 0.84
VPS54-201ENST00000272322 FSD2A1L4K1 749 aa20.29■□□□□ 0.84
VPS54-201ENST00000272322 CHRNA2Q15822 529 aa20.29■□□□□ 0.84
VPS54-201ENST00000272322 CIZ1Q9ULV3 898 aaPredicted RBP20.29■□□□□ 0.84
VPS54-201ENST00000272322 MAP3K2Q9Y2U5 619 aa20.29■□□□□ 0.84
VPS54-201ENST00000272322 KDRP35968 1356 aa20.28■□□□□ 0.84
VPS54-201ENST00000272322 RHPN1Q8TCX5 695 aa20.28■□□□□ 0.84
VPS54-201ENST00000272322 CSB-PGBD3P0DP91 1061 aa20.28■□□□□ 0.84
VPS54-201ENST00000272322 MRE11P49959 708 aa20.28■□□□□ 0.84
VPS54-201ENST00000272322 MPNDQ8N594 471 aa20.28■□□□□ 0.84
VPS54-201ENST00000272322 ANKRD24Q8TF21 1146 aa20.28■□□□□ 0.84
VPS54-201ENST00000272322 TRIM44Q96DX7 344 aaPredicted RBP20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms