RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 CCT4P50991 539 aaKnown RBP33.47■■■□□ 2.95
CBX4-201ENST00000269397 TTC21BQ7Z4L5 1316 aa33.47■■■□□ 2.95
CBX4-201ENST00000269397 MX1P20591 662 aa33.46■■■□□ 2.95
CBX4-201ENST00000269397 ZKSCAN5Q9Y2L8 839 aa33.46■■■□□ 2.95
CBX4-201ENST00000269397 ZNF500O60304 480 aaPredicted RBP33.46■■■□□ 2.95
CBX4-201ENST00000269397 MTHFSDQ2M296 383 aaKnown RBP33.46■■■□□ 2.95
CBX4-201ENST00000269397 LRRCC1Q9C099 1032 aa33.46■■■□□ 2.95
CBX4-201ENST00000269397 C3P01024 1663 aa33.46■■■□□ 2.95
CBX4-201ENST00000269397 TPRNQ4KMQ1 711 aa33.45■■■□□ 2.95
CBX4-201ENST00000269397 CYB5RLQ6IPT4 315 aa33.45■■■□□ 2.95
CBX4-201ENST00000269397 UNC5CLQ8IV45 518 aa33.45■■■□□ 2.95
CBX4-201ENST00000269397 PDCL3Q9H2J4 239 aa33.45■■■□□ 2.95
CBX4-201ENST00000269397 RTF1Q92541 710 aaKnown RBP33.44■■■□□ 2.94
CBX4-201ENST00000269397 CHMLP26374 656 aa33.44■■■□□ 2.94
CBX4-201ENST00000269397 MAP3K19Q56UN5 1328 aa33.44■■■□□ 2.94
CBX4-201ENST00000269397 MBD3O95983 291 aa33.43■■■□□ 2.94
CBX4-201ENST00000269397 FAM13BQ9NYF5 915 aa33.43■■■□□ 2.94
CBX4-201ENST00000269397 SALL3Q9BXA9 1300 aa33.43■■■□□ 2.94
CBX4-201ENST00000269397 ACEP12821 1306 aa33.43■■■□□ 2.94
CBX4-201ENST00000269397 ZBTB7CA1YPR0 619 aa33.42■■■□□ 2.94
CBX4-201ENST00000269397 MCCP23508 829 aa33.42■■■□□ 2.94
CBX4-201ENST00000269397 CUL4AQ13619 759 aa33.42■■■□□ 2.94
CBX4-201ENST00000269397 FKBP5Q13451 457 aaPredicted RBP33.41■■■□□ 2.94
CBX4-201ENST00000269397 NRXN3Q9Y4C0 1643 aa33.41■■■□□ 2.94
CBX4-201ENST00000269397 NRKQ7Z2Y5 1582 aa33.41■■■□□ 2.94
CBX4-201ENST00000269397 GADD45BO75293 160 aaPredicted RBP33.41■■■□□ 2.94
CBX4-201ENST00000269397 MPNDQ8N594 471 aa33.41■■■□□ 2.94
CBX4-201ENST00000269397 IL25Q9H293 177 aa33.41■■■□□ 2.94
CBX4-201ENST00000269397 MCM2P49736 904 aa33.4■■■□□ 2.94
CBX4-201ENST00000269397 STK31Q9BXU1 1019 aa33.39■■■□□ 2.94
CBX4-201ENST00000269397 ITSN1Q15811 1721 aa33.39■■■□□ 2.94
CBX4-201ENST00000269397 PKNOX2Q96KN3 472 aa33.38■■■□□ 2.93
CBX4-201ENST00000269397 IL1RAPL2Q9NP60 686 aa33.38■■■□□ 2.93
CBX4-201ENST00000269397 AKAP12Q02952 1782 aa33.38■■■□□ 2.93
CBX4-201ENST00000269397 UQCRHLA0A096LP55 91 aa33.37■■■□□ 2.93
CBX4-201ENST00000269397 UQCRHP07919 91 aa33.37■■■□□ 2.93
CBX4-201ENST00000269397 TSPY26PQ9H489 355 aa33.37■■■□□ 2.93
CBX4-201ENST00000269397 CCDC39Q9UFE4 941 aa33.37■■■□□ 2.93
CBX4-201ENST00000269397 MAP4K4O95819 1239 aaPredicted RBP33.36■■■□□ 2.93
CBX4-201ENST00000269397 FLIIQ13045 1269 aa33.36■■■□□ 2.93
CBX4-201ENST00000269397 RIMS1Q86UR5 1692 aaKnown RBP33.36■■■□□ 2.93
CBX4-201ENST00000269397 LRRFIP2Q9Y608 721 aaKnown RBP33.36■■■□□ 2.93
CBX4-201ENST00000269397 PEAK1Q9H792 1746 aa33.36■■■□□ 2.93
CBX4-201ENST00000269397 PTMAP06454 111 aaKnown RBP33.35■■■□□ 2.93
CBX4-201ENST00000269397 ATP8B2P98198 1209 aa33.34■■■□□ 2.93
CBX4-201ENST00000269397 TERF1P54274 439 aa33.33■■■□□ 2.93
CBX4-201ENST00000269397 ROBO2Q9HCK4 1378 aa33.33■■■□□ 2.93
CBX4-201ENST00000269397 USP48Q86UV5 1035 aa33.33■■■□□ 2.93
CBX4-201ENST00000269397 NUTM1Q86Y26 1132 aa33.33■■■□□ 2.93
CBX4-201ENST00000269397 INTS4Q96HW7 963 aaKnown RBP33.33■■■□□ 2.93
CBX4-201ENST00000269397 LARP6Q9BRS8 491 aaKnown RBP33.33■■■□□ 2.93
CBX4-201ENST00000269397 OVOS2A0A0J9YW53 1432 aa33.32■■■□□ 2.93
CBX4-201ENST00000269397 OVOS2Q6IE36 1432 aa33.32■■■□□ 2.93
CBX4-201ENST00000269397 ANAPC15P60006 121 aa33.32■■■□□ 2.92
CBX4-201ENST00000269397 ARID3AQ99856 593 aa33.32■■■□□ 2.92
CBX4-201ENST00000269397 GNAI3P08754 354 aa33.31■■■□□ 2.92
CBX4-201ENST00000269397 SPATA31D1Q6ZQQ2 1576 aa33.3■■■□□ 2.92
CBX4-201ENST00000269397 DTNBO60941 627 aa33.28■■■□□ 2.92
CBX4-201ENST00000269397 SYAP1Q96A49 352 aaPredicted RBP33.27■■■□□ 2.92
CBX4-201ENST00000269397 MCM5P33992 734 aa33.27■■■□□ 2.92
CBX4-201ENST00000269397 FAM69CQ0P6D2 419 aa33.27■■■□□ 2.92
CBX4-201ENST00000269397 TCHHQ07283 1943 aa33.27■■■□□ 2.92
CBX4-201ENST00000269397 CSPP1Q1MSJ5 1256 aa33.26■■■□□ 2.92
CBX4-201ENST00000269397 EYA1Q99502 592 aa33.26■■■□□ 2.92
CBX4-201ENST00000269397 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP33.26■■■□□ 2.92
CBX4-201ENST00000269397 ZNF830Q96NB3 372 aaPredicted RBP33.26■■■□□ 2.91
CBX4-201ENST00000269397 STAP2Q9UGK3 403 aa33.26■■■□□ 2.91
CBX4-201ENST00000269397 CCDC30Q5VVM6 783 aa33.25■■■□□ 2.91
CBX4-201ENST00000269397 SRCIN1Q9C0H9 1055 aa33.25■■■□□ 2.91
CBX4-201ENST00000269397 TUBGCP6Q96RT7 1819 aa33.25■■■□□ 2.91
CBX4-201ENST00000269397 USP6P35125 1406 aa33.24■■■□□ 2.91
CBX4-201ENST00000269397 RGPD1P0DJD0 1748 aa33.24■■■□□ 2.91
CBX4-201ENST00000269397 USP44Q9H0E7 712 aa33.24■■■□□ 2.91
CBX4-201ENST00000269397 SIRT1Q96EB6 747 aa33.24■■■□□ 2.91
CBX4-201ENST00000269397 WDR33Q9C0J8 1336 aaKnown RBP33.23■■■□□ 2.91
CBX4-201ENST00000269397 CNPY2Q9Y2B0 182 aa33.23■■■□□ 2.91
CBX4-201ENST00000269397 ARHGEF10O15013 1369 aa33.23■■■□□ 2.91
CBX4-201ENST00000269397 TECPR2O15040 1411 aa33.23■■■□□ 2.91
CBX4-201ENST00000269397 AMPHP49418 695 aa33.22■■■□□ 2.91
CBX4-201ENST00000269397 HSPA4P34932 840 aa33.22■■■□□ 2.91
CBX4-201ENST00000269397 USP25Q9UHP3 1055 aa33.22■■■□□ 2.91
CBX4-201ENST00000269397 PPP6R1Q9UPN7 881 aa33.21■■■□□ 2.91
CBX4-201ENST00000269397 UBTFL1P0CB47 393 aaPredicted RBP33.21■■■□□ 2.91
CBX4-201ENST00000269397 PLEKHG3A1L390 1219 aa33.2■■■□□ 2.91
CBX4-201ENST00000269397 SSH2Q76I76 1423 aa33.2■■■□□ 2.91
CBX4-201ENST00000269397 SURF6O75683 361 aaKnown RBP33.2■■■□□ 2.9
CBX4-201ENST00000269397 RPAP1Q9BWH6 1393 aaPredicted RBP33.19■■■□□ 2.9
CBX4-201ENST00000269397 CEP170BQ9Y4F5 1589 aaPredicted RBP33.19■■■□□ 2.9
CBX4-201ENST00000269397 PHAXQ9H814 394 aaKnown RBP33.18■■■□□ 2.9
CBX4-201ENST00000269397 USP31Q70CQ4 1352 aa33.18■■■□□ 2.9
CBX4-201ENST00000269397 PHF14O94880 888 aa33.18■■■□□ 2.9
CBX4-201ENST00000269397 KIAA2012Q0VF49 1180 aa33.18■■■□□ 2.9
CBX4-201ENST00000269397 CPA1P15085 419 aa33.17■■■□□ 2.9
CBX4-201ENST00000269397 SASS6Q6UVJ0 657 aa33.17■■■□□ 2.9
CBX4-201ENST00000269397 DNTTIP2Q5QJE6 756 aaKnown RBP33.17■■■□□ 2.9
CBX4-201ENST00000269397 PPP1R42Q7Z4L9 355 aa33.17■■■□□ 2.9
CBX4-201ENST00000269397 RASEFQ8IZ41 740 aa33.17■■■□□ 2.9
CBX4-201ENST00000269397 ESF1Q9H501 851 aaKnown RBP33.17■■■□□ 2.9
CBX4-201ENST00000269397 SOS1Q07889 1333 aaPredicted RBP33.16■■■□□ 2.9
CBX4-201ENST00000269397 JARID2Q92833 1246 aaPredicted RBP33.16■■■□□ 2.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms