RNA–Protein interactions for RNA: ENST00000258962.4

SRSF1-201, Transcript of serine and arginine rich splicing factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SRSF1, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF1-201ENST00000258962 NKX1-1Q15270 411 aaPredicted RBP22.63■■□□□ 1.21
SRSF1-201ENST00000258962 ZNF530Q6P9A1 599 aaPredicted RBP22.63■■□□□ 1.21
SRSF1-201ENST00000258962 PKD1L3Q7Z443 1732 aa22.63■■□□□ 1.21
SRSF1-201ENST00000258962 LMOD3Q0VAK6 560 aa22.62■■□□□ 1.21
SRSF1-201ENST00000258962 TSR2Q969E8 191 aaKnown RBP22.62■■□□□ 1.21
SRSF1-201ENST00000258962 THUMPD2Q9BTF0 503 aaKnown RBP22.62■■□□□ 1.21
SRSF1-201ENST00000258962 NHSQ6T4R5 1651 aa22.62■■□□□ 1.21
SRSF1-201ENST00000258962 HSP90AB1P08238 724 aaKnown RBP22.62■■□□□ 1.21
SRSF1-201ENST00000258962 C1orf141Q5JVX7 400 aa22.62■■□□□ 1.21
SRSF1-201ENST00000258962 PELP1Q8IZL8 1130 aaKnown RBP22.62■■□□□ 1.21
SRSF1-201ENST00000258962 NBPF14Q5TI25 921 aa22.61■■□□□ 1.21
SRSF1-201ENST00000258962 MTHFSDQ2M296 383 aaKnown RBP22.6■■□□□ 1.21
SRSF1-201ENST00000258962 PLIN1O60240 522 aa22.59■■□□□ 1.21
SRSF1-201ENST00000258962 TXNRD1Q16881 649 aa22.59■■□□□ 1.21
SRSF1-201ENST00000258962 MPRIPQ6WCQ1 1025 aa22.59■■□□□ 1.21
SRSF1-201ENST00000258962 CALD1Q05682 793 aaKnown RBP22.58■■□□□ 1.21
SRSF1-201ENST00000258962 DCTN1Q14203 1278 aa22.57■■□□□ 1.2
SRSF1-201ENST00000258962 PROM2Q8N271 834 aa22.57■■□□□ 1.2
SRSF1-201ENST00000258962 DCAF5Q96JK2 942 aa22.57■■□□□ 1.2
SRSF1-201ENST00000258962 DOT1LQ8TEK3 1739 aa22.57■■□□□ 1.2
SRSF1-201ENST00000258962 ZNF853P0CG23 659 aa22.57■■□□□ 1.2
SRSF1-201ENST00000258962 BTAF1O14981 1849 aa22.56■■□□□ 1.2
SRSF1-201ENST00000258962 BCAR3O75815 825 aa22.56■■□□□ 1.2
SRSF1-201ENST00000258962 EXOSC9Q06265 439 aaKnown RBP22.56■■□□□ 1.2
SRSF1-201ENST00000258962 IFT57Q9NWB7 429 aa22.56■■□□□ 1.2
SRSF1-201ENST00000258962 PPP4R2Q9NY27 417 aa22.56■■□□□ 1.2
SRSF1-201ENST00000258962 TMOD3Q9NYL9 352 aa22.56■■□□□ 1.2
SRSF1-201ENST00000258962 GAS2L2Q8NHY3 880 aa22.55■■□□□ 1.2
SRSF1-201ENST00000258962 RARSP54136 660 aaKnown RBP22.54■■□□□ 1.2
SRSF1-201ENST00000258962 AKAP4Q5JQC9 854 aa22.54■■□□□ 1.2
SRSF1-201ENST00000258962 RGPD3A6NKT7 1758 aaPredicted RBP22.54■■□□□ 1.2
SRSF1-201ENST00000258962 RGPD4Q7Z3J3 1758 aa22.54■■□□□ 1.2
SRSF1-201ENST00000258962 ERVV-2B6SEH9 535 aa22.53■■□□□ 1.2
SRSF1-201ENST00000258962 CT47B1P0C2W7 299 aaPredicted RBP22.53■■□□□ 1.2
SRSF1-201ENST00000258962 GNAI1P63096 354 aa22.53■■□□□ 1.2
SRSF1-201ENST00000258962 R3HDM1Q15032 1099 aaKnown RBP22.53■■□□□ 1.2
SRSF1-201ENST00000258962 PIGBQ92521 554 aa22.53■■□□□ 1.2
SRSF1-201ENST00000258962 PSDA5PKW4 1024 aaPredicted RBP22.52■■□□□ 1.2
SRSF1-201ENST00000258962 MCM10Q7L590 875 aa22.52■■□□□ 1.2
SRSF1-201ENST00000258962 SMARCC1Q92922 1105 aaPredicted RBP22.52■■□□□ 1.2
SRSF1-201ENST00000258962 LAS1LQ9Y4W2 734 aaKnown RBP22.52■■□□□ 1.2
SRSF1-201ENST00000258962 SLC27A3Q5K4L6 730 aa22.52■■□□□ 1.19
SRSF1-201ENST00000258962 CFAP44Q96MT7 982 aa22.52■■□□□ 1.19
SRSF1-201ENST00000258962 CABP4P57796 275 aa22.51■■□□□ 1.19
SRSF1-201ENST00000258962 C20orf194Q5TEA3 1177 aa22.51■■□□□ 1.19
SRSF1-201ENST00000258962 EXOC6Q8TAG9 804 aa22.51■■□□□ 1.19
SRSF1-201ENST00000258962 MBIPQ9NS73 344 aa22.51■■□□□ 1.19
SRSF1-201ENST00000258962 VIRMAQ69YN4 1812 aaKnown RBP22.51■■□□□ 1.19
SRSF1-201ENST00000258962 RREB1Q92766 1687 aa22.5■■□□□ 1.19
SRSF1-201ENST00000258962 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.5■■□□□ 1.19
SRSF1-201ENST00000258962 MAP3K5Q99683 1374 aa22.5■■□□□ 1.19
SRSF1-201ENST00000258962 STK32BQ9NY57 414 aa22.49■■□□□ 1.19
SRSF1-201ENST00000258962 HTATSF1O43719 755 aaKnown RBP22.48■■□□□ 1.19
SRSF1-201ENST00000258962 CCNL1Q9UK58 526 aaPredicted RBP22.48■■□□□ 1.19
SRSF1-201ENST00000258962 NUP188Q5SRE5 1749 aa22.48■■□□□ 1.19
SRSF1-201ENST00000258962 HMGB2P26583 209 aaKnown RBP22.47■■□□□ 1.19
SRSF1-201ENST00000258962 CRBNQ96SW2 442 aa22.47■■□□□ 1.19
SRSF1-201ENST00000258962 PALLDQ8WX93 1383 aa22.47■■□□□ 1.19
SRSF1-201ENST00000258962 GNAT3A8MTJ3 354 aa22.47■■□□□ 1.19
SRSF1-201ENST00000258962 RTF1Q92541 710 aaKnown RBP22.47■■□□□ 1.19
SRSF1-201ENST00000258962 LRRC4BQ9NT99 713 aa22.47■■□□□ 1.19
SRSF1-201ENST00000258962 ITGB4P16144 1822 aa22.46■■□□□ 1.19
SRSF1-201ENST00000258962 TOGARAM1Q9Y4F4 1720 aa22.46■■□□□ 1.19
SRSF1-201ENST00000258962 KDM6AO15550 1401 aaPredicted RBP22.46■■□□□ 1.19
SRSF1-201ENST00000258962 CHL1O00533 1208 aa22.45■■□□□ 1.18
SRSF1-201ENST00000258962 KCNQ4P56696 695 aa22.45■■□□□ 1.18
SRSF1-201ENST00000258962 NFATC2IPQ8NCF5 419 aa22.45■■□□□ 1.18
SRSF1-201ENST00000258962 BCL2L13Q9BXK5 485 aa22.45■■□□□ 1.18
SRSF1-201ENST00000258962 ANO8Q9HCE9 1232 aaPredicted RBP22.45■■□□□ 1.18
SRSF1-201ENST00000258962 ASAP1Q9ULH1 1129 aa22.45■■□□□ 1.18
SRSF1-201ENST00000258962 RNMTO43148 476 aaKnown RBP22.44■■□□□ 1.18
SRSF1-201ENST00000258962 B4GALNT3Q6L9W6 998 aa22.44■■□□□ 1.18
SRSF1-201ENST00000258962 LGR6Q9HBX8 967 aa22.44■■□□□ 1.18
SRSF1-201ENST00000258962 SLC15A2Q16348 729 aa22.43■■□□□ 1.18
SRSF1-201ENST00000258962 ATG3Q9NT62 314 aa22.43■■□□□ 1.18
SRSF1-201ENST00000258962 TSPYL6Q8N831 410 aa22.42■■□□□ 1.18
SRSF1-201ENST00000258962 IL17REQ8NFR9 667 aa22.42■■□□□ 1.18
SRSF1-201ENST00000258962 SSH1Q8WYL5 1049 aa22.41■■□□□ 1.18
SRSF1-201ENST00000258962 SLC52A2Q9HAB3 445 aa22.41■■□□□ 1.18
SRSF1-201ENST00000258962 ADAMTS7Q9UKP4 1686 aa22.41■■□□□ 1.18
SRSF1-201ENST00000258962 C8orf58Q8NAV2 365 aa22.41■■□□□ 1.18
SRSF1-201ENST00000258962 LOC102724428A0A0B4J2F2 783 aa22.4■■□□□ 1.18
SRSF1-201ENST00000258962 VAMP4O75379 141 aa22.4■■□□□ 1.18
SRSF1-201ENST00000258962 SIK1P57059 783 aa22.4■■□□□ 1.18
SRSF1-201ENST00000258962 FRAT1Q92837 279 aaPredicted RBP22.4■■□□□ 1.18
SRSF1-201ENST00000258962 SMC4Q9NTJ3 1288 aa22.4■■□□□ 1.18
SRSF1-201ENST00000258962 CEMIPQ8WUJ3 1361 aa22.4■■□□□ 1.18
SRSF1-201ENST00000258962 TEFQ10587 303 aa22.39■■□□□ 1.17
SRSF1-201ENST00000258962 PDE3AQ14432 1141 aa22.39■■□□□ 1.17
SRSF1-201ENST00000258962 ZNF428Q96B54 188 aa22.39■■□□□ 1.17
SRSF1-201ENST00000258962 RBM42Q9BTD8 480 aaKnown RBP22.39■■□□□ 1.17
SRSF1-201ENST00000258962 LY75O60449 1722 aa22.38■■□□□ 1.17
SRSF1-201ENST00000258962 CANXP27824 592 aaKnown RBP22.38■■□□□ 1.17
SRSF1-201ENST00000258962 ALDH1L2Q3SY69 923 aa22.38■■□□□ 1.17
SRSF1-201ENST00000258962 TFCP2L1Q9NZI6 479 aa22.38■■□□□ 1.17
SRSF1-201ENST00000258962 KDM3BQ7LBC6 1761 aa22.38■■□□□ 1.17
SRSF1-201ENST00000258962 ATP6V1AP38606 617 aa22.37■■□□□ 1.17
SRSF1-201ENST00000258962 TWISTNBQ3B726 338 aaPredicted RBP22.37■■□□□ 1.17
SRSF1-201ENST00000258962 TNNQ9UQP3 1299 aa22.37■■□□□ 1.17
SRSF1-201ENST00000258962 SIPA1L3O60292 1781 aaPredicted RBP22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms