RNA–Protein interactions for RNA: ENST00000223398.10

CLIP2-201, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP2, Length 5,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-201ENST00000223398 RFC4P35249 363 aa21.84■■□□□ 1.09
CLIP2-201ENST00000223398 FANCIQ9NVI1 1328 aa21.84■■□□□ 1.09
CLIP2-201ENST00000223398 NFKBIBQ15653 356 aa21.83■■□□□ 1.09
CLIP2-201ENST00000223398 PAF1Q8N7H5 531 aa21.83■■□□□ 1.09
CLIP2-201ENST00000223398 TRIM5Q9C035 493 aa21.83■■□□□ 1.09
CLIP2-201ENST00000223398 JMYQ8N9B5 988 aa21.83■■□□□ 1.09
CLIP2-201ENST00000223398 MAP3K2Q9Y2U5 619 aa21.83■■□□□ 1.09
CLIP2-201ENST00000223398 DDX11Q96FC9 970 aa21.83■■□□□ 1.08
CLIP2-201ENST00000223398 MX1P20591 662 aa21.82■■□□□ 1.08
CLIP2-201ENST00000223398 HSP90AB2PQ58FF8 381 aa21.82■■□□□ 1.08
CLIP2-201ENST00000223398 SLC5A1P13866 664 aa21.82■■□□□ 1.08
CLIP2-201ENST00000223398 NOL7Q9UMY1 257 aaKnown RBP21.81■■□□□ 1.08
CLIP2-201ENST00000223398 SCAF11Q99590 1463 aaKnown RBP21.81■■□□□ 1.08
CLIP2-201ENST00000223398 CASTP20810 708 aaKnown RBP21.81■■□□□ 1.08
CLIP2-201ENST00000223398 TTC21BQ7Z4L5 1316 aa21.81■■□□□ 1.08
CLIP2-201ENST00000223398 RARSP54136 660 aaKnown RBP21.8■■□□□ 1.08
CLIP2-201ENST00000223398 FLIIQ13045 1269 aa21.8■■□□□ 1.08
CLIP2-201ENST00000223398 CDKL5O76039 1030 aa21.8■■□□□ 1.08
CLIP2-201ENST00000223398 NCKAP5LQ9HCH0 1330 aa21.8■■□□□ 1.08
CLIP2-201ENST00000223398 WDR78Q5VTH9 848 aa21.8■■□□□ 1.08
CLIP2-201ENST00000223398 WWC3Q9ULE0 1092 aa21.8■■□□□ 1.08
CLIP2-201ENST00000223398 NAPBQ9H115 298 aa21.8■■□□□ 1.08
CLIP2-201ENST00000223398 FILIP1LQ4L180 1135 aa21.79■■□□□ 1.08
CLIP2-201ENST00000223398 GLRX3O76003 335 aaKnown RBP21.79■■□□□ 1.08
CLIP2-201ENST00000223398 PRPF40BQ6NWY9 871 aaKnown RBP21.79■■□□□ 1.08
CLIP2-201ENST00000223398 AEBP1Q8IUX7 1158 aa21.79■■□□□ 1.08
CLIP2-201ENST00000223398 MAP3K12Q12852 859 aa21.78■■□□□ 1.08
CLIP2-201ENST00000223398 SYCP1Q15431 976 aa21.78■■□□□ 1.08
CLIP2-201ENST00000223398 DISP3Q9P2K9 1392 aa21.78■■□□□ 1.08
CLIP2-201ENST00000223398 TRAK2O60296 914 aa21.78■■□□□ 1.08
CLIP2-201ENST00000223398 TANGO6Q9C0B7 1094 aa21.78■■□□□ 1.08
CLIP2-201ENST00000223398 UHRF1BP1LA0JNW5 1464 aa21.78■■□□□ 1.08
CLIP2-201ENST00000223398 SLC4A8Q2Y0W8 1093 aa21.78■■□□□ 1.08
CLIP2-201ENST00000223398 PDCL3Q9H2J4 239 aa21.78■■□□□ 1.08
CLIP2-201ENST00000223398 TEX14Q8IWB6 1497 aa21.78■■□□□ 1.08
CLIP2-201ENST00000223398 K7ELQ4 463 aaPredicted RBP21.77■■□□□ 1.08
CLIP2-201ENST00000223398 RAB11FIP3O75154 756 aa21.77■■□□□ 1.08
CLIP2-201ENST00000223398 UBE3BQ7Z3V4 1068 aa21.77■■□□□ 1.08
CLIP2-201ENST00000223398 NPHP3Q7Z494 1330 aa21.77■■□□□ 1.08
CLIP2-201ENST00000223398 RANBP6O60518 1105 aaKnown RBP21.77■■□□□ 1.08
CLIP2-201ENST00000223398 GPS2Q13227 327 aa21.77■■□□□ 1.08
CLIP2-201ENST00000223398 CCDC82Q8N4S0 544 aa21.77■■□□□ 1.08
CLIP2-201ENST00000223398 KRT32Q14532 448 aa21.77■■□□□ 1.08
CLIP2-201ENST00000223398 DDX46Q7L014 1031 aaKnown RBP21.77■■□□□ 1.08
CLIP2-201ENST00000223398 ZCRB1Q8TBF4 217 aaKnown RBP21.77■■□□□ 1.08
CLIP2-201ENST00000223398 GPATCH8Q9UKJ3 1502 aaKnown RBP21.77■■□□□ 1.08
CLIP2-201ENST00000223398 ALDH1L2Q3SY69 923 aa21.77■■□□□ 1.08
CLIP2-201ENST00000223398 LDHAL6AQ6ZMR3 332 aa21.77■■□□□ 1.08
CLIP2-201ENST00000223398 C20orf194Q5TEA3 1177 aa21.77■■□□□ 1.07
CLIP2-201ENST00000223398 SNRKQ9NRH2 765 aa21.77■■□□□ 1.07
CLIP2-201ENST00000223398 SLC39A6Q13433 755 aa21.76■■□□□ 1.07
CLIP2-201ENST00000223398 MNS1Q8NEH6 495 aa21.76■■□□□ 1.07
CLIP2-201ENST00000223398 TEX13AQ9BXU3 409 aaPredicted RBP21.76■■□□□ 1.07
CLIP2-201ENST00000223398 MYCNP04198 464 aaPredicted RBP21.76■■□□□ 1.07
CLIP2-201ENST00000223398 NASPP49321 788 aaPredicted RBP21.76■■□□□ 1.07
CLIP2-201ENST00000223398 MBD3O95983 291 aa21.76■■□□□ 1.07
CLIP2-201ENST00000223398 CAGE1Q8TC20 777 aa21.76■■□□□ 1.07
CLIP2-201ENST00000223398 FAM13BQ9NYF5 915 aa21.76■■□□□ 1.07
CLIP2-201ENST00000223398 ATP10BO94823 1461 aa21.76■■□□□ 1.07
CLIP2-201ENST00000223398 ZNF287Q9HBT7 754 aa21.75■■□□□ 1.07
CLIP2-201ENST00000223398 CWC25Q9NXE8 425 aaPredicted RBP21.75■■□□□ 1.07
CLIP2-201ENST00000223398 ABCC11Q96J66 1382 aa21.75■■□□□ 1.07
CLIP2-201ENST00000223398 ATP6V1AP38606 617 aa21.75■■□□□ 1.07
CLIP2-201ENST00000223398 MATR3P43243 847 aaKnown RBP eCLIP21.75■■□□□ 1.07
CLIP2-201ENST00000223398 PI4KAP2A4QPH2 592 aa21.75■■□□□ 1.07
CLIP2-201ENST00000223398 NBPF6Q5VWK0 638 aa21.75■■□□□ 1.07
CLIP2-201ENST00000223398 NBPF5PQ86XG9 351 aaPredicted RBP21.75■■□□□ 1.07
CLIP2-201ENST00000223398 PI4KAP1Q8N8J0 262 aa21.75■■□□□ 1.07
CLIP2-201ENST00000223398 NBPF4Q96M43 638 aa21.75■■□□□ 1.07
CLIP2-201ENST00000223398 CCDC96Q2M329 555 aa21.75■■□□□ 1.07
CLIP2-201ENST00000223398 PLCH2O75038 1416 aa21.75■■□□□ 1.07
CLIP2-201ENST00000223398 PATL2C9JE40 543 aaKnown RBP21.74■■□□□ 1.07
CLIP2-201ENST00000223398 PIP4K2AP48426 406 aaPredicted RBP21.74■■□□□ 1.07
CLIP2-201ENST00000223398 WDR33Q9C0J8 1336 aaKnown RBP21.74■■□□□ 1.07
CLIP2-201ENST00000223398 KRT85P78386 507 aa21.74■■□□□ 1.07
CLIP2-201ENST00000223398 MBIPQ9NS73 344 aa21.74■■□□□ 1.07
CLIP2-201ENST00000223398 ZRANB1Q9UGI0 708 aa21.74■■□□□ 1.07
CLIP2-201ENST00000223398 U3KPZ7 1027 aaPredicted RBP21.74■■□□□ 1.07
CLIP2-201ENST00000223398 SNRPA1P09661 255 aaKnown RBP21.74■■□□□ 1.07
CLIP2-201ENST00000223398 TNNT3P45378 269 aaPredicted RBP21.74■■□□□ 1.07
CLIP2-201ENST00000223398 TSPY26PQ9H489 355 aa21.74■■□□□ 1.07
CLIP2-201ENST00000223398 UPF3BQ9BZI7 483 aaKnown RBP21.74■■□□□ 1.07
CLIP2-201ENST00000223398 ZNF444Q8N0Y2 327 aaPredicted RBP21.73■■□□□ 1.07
CLIP2-201ENST00000223398 SEC63Q9UGP8 760 aaKnown RBP21.73■■□□□ 1.07
CLIP2-201ENST00000223398 LRRC59Q96AG4 307 aaKnown RBP21.73■■□□□ 1.07
CLIP2-201ENST00000223398 SERPINC1P01008 464 aa21.73■■□□□ 1.07
CLIP2-201ENST00000223398 PPP1R42Q7Z4L9 355 aa21.73■■□□□ 1.07
CLIP2-201ENST00000223398 A2MP01023 1474 aa21.73■■□□□ 1.07
CLIP2-201ENST00000223398 RIMS2Q9UQ26 1411 aa21.73■■□□□ 1.07
CLIP2-201ENST00000223398 LETM1O95202 739 aaPredicted RBP21.72■■□□□ 1.07
CLIP2-201ENST00000223398 TNMDQ9H2S6 317 aa21.72■■□□□ 1.07
CLIP2-201ENST00000223398 CDC5LQ99459 802 aaKnown RBP21.72■■□□□ 1.07
CLIP2-201ENST00000223398 STIM1Q13586 685 aa21.72■■□□□ 1.07
CLIP2-201ENST00000223398 DDB1Q16531 1140 aa21.72■■□□□ 1.07
CLIP2-201ENST00000223398 SPATA32Q96LK8 384 aa21.72■■□□□ 1.07
CLIP2-201ENST00000223398 SKAP1Q86WV1 359 aa21.72■■□□□ 1.07
CLIP2-201ENST00000223398 SPC24Q8NBT2 197 aa21.71■■□□□ 1.07
CLIP2-201ENST00000223398 ZSCAN31Q96LW9 406 aaPredicted RBP21.71■■□□□ 1.07
CLIP2-201ENST00000223398 BMP2KQ9NSY1 1161 aaPredicted RBP21.71■■□□□ 1.07
CLIP2-201ENST00000223398 PPIP5K1Q6PFW1 1433 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms