Protein–RNA interactions for Protein: Q8CGV4

Rdh1, MCG140848, mousemouse

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rdh1Q8CGV4 Gm25239-201ENSMUST00000174915 86 ntBASIC37.51■■■■□ 3.6
Rdh1Q8CGV4 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC34.64■■■■□ 3.14
Rdh1Q8CGV4 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
Rdh1Q8CGV4 Gm15042-201ENSMUST00000120212 883 ntBASIC32.9■■■□□ 2.86
Rdh1Q8CGV4 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
Rdh1Q8CGV4 Gm24109-201ENSMUST00000175489 103 ntBASIC32.45■■■□□ 2.79
Rdh1Q8CGV4 Gm15045-201ENSMUST00000117359 883 ntBASIC32.19■■■□□ 2.74
Rdh1Q8CGV4 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Rdh1Q8CGV4 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Rdh1Q8CGV4 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC31.67■■■□□ 2.66
Rdh1Q8CGV4 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC31.64■■■□□ 2.66
Rdh1Q8CGV4 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
Rdh1Q8CGV4 Gm23366-201ENSMUST00000175022 89 ntBASIC31.35■■■□□ 2.61
Rdh1Q8CGV4 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Rdh1Q8CGV4 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Rdh1Q8CGV4 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Rdh1Q8CGV4 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC30.64■■■□□ 2.5
Rdh1Q8CGV4 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
Rdh1Q8CGV4 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Rdh1Q8CGV4 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
Rdh1Q8CGV4 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Rdh1Q8CGV4 AC153911.1-202ENSMUST00000218534 1034 ntBASIC30.21■■■□□ 2.43
Rdh1Q8CGV4 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC30.16■■■□□ 2.42
Rdh1Q8CGV4 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC30.16■■■□□ 2.42
Rdh1Q8CGV4 Psd-208ENSMUST00000224556 2034 ntBASIC30.15■■■□□ 2.42
Rdh1Q8CGV4 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.41
Rdh1Q8CGV4 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Rdh1Q8CGV4 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC30.05■■■□□ 2.4
Rdh1Q8CGV4 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC29.97■■■□□ 2.39
Rdh1Q8CGV4 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC29.88■■■□□ 2.37
Rdh1Q8CGV4 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC29.83■■■□□ 2.37
Rdh1Q8CGV4 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
Rdh1Q8CGV4 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
Rdh1Q8CGV4 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
Rdh1Q8CGV4 Gm25238-201ENSMUST00000174914 89 ntBASIC29.56■■■□□ 2.32
Rdh1Q8CGV4 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC29.52■■■□□ 2.32
Rdh1Q8CGV4 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC29.47■■■□□ 2.31
Rdh1Q8CGV4 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Rdh1Q8CGV4 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Rdh1Q8CGV4 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
Rdh1Q8CGV4 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.24■■■□□ 2.27
Rdh1Q8CGV4 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Rdh1Q8CGV4 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Rdh1Q8CGV4 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC28.99■■■□□ 2.23
Rdh1Q8CGV4 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC28.93■■■□□ 2.22
Rdh1Q8CGV4 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC28.92■■■□□ 2.22
Rdh1Q8CGV4 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
Rdh1Q8CGV4 Gm27325-201ENSMUST00000175467 74 ntBASIC28.84■■■□□ 2.21
Rdh1Q8CGV4 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC28.82■■■□□ 2.2
Rdh1Q8CGV4 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
Rdh1Q8CGV4 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Rdh1Q8CGV4 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC28.7■■■□□ 2.18
Rdh1Q8CGV4 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC28.65■■■□□ 2.18
Rdh1Q8CGV4 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC28.55■■■□□ 2.16
Rdh1Q8CGV4 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC28.54■■■□□ 2.16
Rdh1Q8CGV4 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.16
Rdh1Q8CGV4 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC28.51■■■□□ 2.15
Rdh1Q8CGV4 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
Rdh1Q8CGV4 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Rdh1Q8CGV4 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Rdh1Q8CGV4 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC28.3■■■□□ 2.12
Rdh1Q8CGV4 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Rdh1Q8CGV4 Rab21-202ENSMUST00000218831 843 ntBASIC28.25■■■□□ 2.11
Rdh1Q8CGV4 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Rdh1Q8CGV4 Gm25262-201ENSMUST00000174934 133 ntBASIC28.24■■■□□ 2.11
Rdh1Q8CGV4 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Rdh1Q8CGV4 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.2■■■□□ 2.1
Rdh1Q8CGV4 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
Rdh1Q8CGV4 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
Rdh1Q8CGV4 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Rdh1Q8CGV4 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC28.14■■■□□ 2.1
Rdh1Q8CGV4 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC28.14■■■□□ 2.1
Rdh1Q8CGV4 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Rdh1Q8CGV4 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Rdh1Q8CGV4 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC28.04■■■□□ 2.08
Rdh1Q8CGV4 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC28.03■■■□□ 2.08
Rdh1Q8CGV4 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Rdh1Q8CGV4 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
Rdh1Q8CGV4 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Rdh1Q8CGV4 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC27.89■■■□□ 2.06
Rdh1Q8CGV4 CT025624.2-201ENSMUST00000223609 1909 ntBASIC27.88■■■□□ 2.05
Rdh1Q8CGV4 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC27.87■■■□□ 2.05
Rdh1Q8CGV4 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
Rdh1Q8CGV4 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
Rdh1Q8CGV4 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
Rdh1Q8CGV4 Gm42596-201ENSMUST00000196305 1958 ntBASIC27.82■■■□□ 2.04
Rdh1Q8CGV4 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC27.81■■■□□ 2.04
Rdh1Q8CGV4 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC27.77■■■□□ 2.04
Rdh1Q8CGV4 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC27.72■■■□□ 2.03
Rdh1Q8CGV4 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC27.71■■■□□ 2.03
Rdh1Q8CGV4 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC27.7■■■□□ 2.03
Rdh1Q8CGV4 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Rdh1Q8CGV4 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Rdh1Q8CGV4 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC27.64■■■□□ 2.02
Rdh1Q8CGV4 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC27.63■■■□□ 2.01
Rdh1Q8CGV4 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC27.58■■■□□ 2.01
Rdh1Q8CGV4 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC27.52■■■□□ 2
Rdh1Q8CGV4 Gm26115-201ENSMUST00000175605 87 ntBASIC27.49■■□□□ 1.99
Rdh1Q8CGV4 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Rdh1Q8CGV4 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC27.48■■□□□ 1.99
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms