Protein–RNA interactions for Protein: Q61818

Rai1, Retinoic acid-induced protein 1, mousemouse

Predictions only

Length 1,889 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rai1Q61818 Gm25239-201ENSMUST00000174915 86 ntBASIC38.81■■■■□ 3.8
Rai1Q61818 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC36.1■■■■□ 3.37
Rai1Q61818 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
Rai1Q61818 Gm24109-201ENSMUST00000175489 103 ntBASIC33.86■■■■□ 3.01
Rai1Q61818 Gm15042-201ENSMUST00000120212 883 ntBASIC33.74■■■□□ 2.99
Rai1Q61818 Gm15045-201ENSMUST00000117359 883 ntBASIC33.1■■■□□ 2.89
Rai1Q61818 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC32.82■■■□□ 2.85
Rai1Q61818 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
Rai1Q61818 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
Rai1Q61818 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
Rai1Q61818 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
Rai1Q61818 Gm23366-201ENSMUST00000175022 89 ntBASIC32.34■■■□□ 2.77
Rai1Q61818 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Rai1Q61818 AC153911.1-202ENSMUST00000218534 1034 ntBASIC31.56■■■□□ 2.64
Rai1Q61818 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Rai1Q61818 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
Rai1Q61818 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC31.27■■■□□ 2.6
Rai1Q61818 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC31.19■■■□□ 2.58
Rai1Q61818 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Rai1Q61818 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC30.98■■■□□ 2.55
Rai1Q61818 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
Rai1Q61818 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Rai1Q61818 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
Rai1Q61818 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC30.81■■■□□ 2.52
Rai1Q61818 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC30.81■■■□□ 2.52
Rai1Q61818 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Rai1Q61818 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC30.7■■■□□ 2.5
Rai1Q61818 Gm25238-201ENSMUST00000174914 89 ntBASIC30.67■■■□□ 2.5
Rai1Q61818 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Rai1Q61818 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC30.53■■■□□ 2.48
Rai1Q61818 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
Rai1Q61818 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Rai1Q61818 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC30.24■■■□□ 2.43
Rai1Q61818 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC30.16■■■□□ 2.42
Rai1Q61818 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Rai1Q61818 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
Rai1Q61818 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
Rai1Q61818 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC29.92■■■□□ 2.38
Rai1Q61818 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC29.8■■■□□ 2.36
Rai1Q61818 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC29.75■■■□□ 2.35
Rai1Q61818 Psd-208ENSMUST00000224556 2034 ntBASIC29.72■■■□□ 2.35
Rai1Q61818 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC29.7■■■□□ 2.34
Rai1Q61818 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC29.59■■■□□ 2.33
Rai1Q61818 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
Rai1Q61818 Gm27325-201ENSMUST00000175467 74 ntBASIC29.48■■■□□ 2.31
Rai1Q61818 Gm25262-201ENSMUST00000174934 133 ntBASIC29.4■■■□□ 2.3
Rai1Q61818 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC29.39■■■□□ 2.3
Rai1Q61818 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Rai1Q61818 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
Rai1Q61818 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.18■■■□□ 2.26
Rai1Q61818 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC29.1■■■□□ 2.25
Rai1Q61818 Rab21-202ENSMUST00000218831 843 ntBASIC29.1■■■□□ 2.25
Rai1Q61818 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC29.03■■■□□ 2.24
Rai1Q61818 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC29.03■■■□□ 2.24
Rai1Q61818 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC28.99■■■□□ 2.23
Rai1Q61818 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC28.97■■■□□ 2.23
Rai1Q61818 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC28.93■■■□□ 2.22
Rai1Q61818 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
Rai1Q61818 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC28.93■■■□□ 2.22
Rai1Q61818 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
Rai1Q61818 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
Rai1Q61818 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
Rai1Q61818 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
Rai1Q61818 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC28.83■■■□□ 2.21
Rai1Q61818 Gm26115-201ENSMUST00000175605 87 ntBASIC28.81■■■□□ 2.2
Rai1Q61818 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC28.79■■■□□ 2.2
Rai1Q61818 Gm8109-201ENSMUST00000194076 746 ntBASIC28.74■■■□□ 2.19
Rai1Q61818 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Rai1Q61818 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC28.67■■■□□ 2.18
Rai1Q61818 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Rai1Q61818 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC28.63■■■□□ 2.17
Rai1Q61818 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
Rai1Q61818 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Rai1Q61818 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Rai1Q61818 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
Rai1Q61818 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC28.55■■■□□ 2.16
Rai1Q61818 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC28.55■■■□□ 2.16
Rai1Q61818 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Rai1Q61818 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC28.48■■■□□ 2.15
Rai1Q61818 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.14
Rai1Q61818 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC28.41■■■□□ 2.14
Rai1Q61818 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Rai1Q61818 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
Rai1Q61818 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Rai1Q61818 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
Rai1Q61818 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC28.23■■■□□ 2.11
Rai1Q61818 Gm17082-201ENSMUST00000166043 1091 ntBASIC28.2■■■□□ 2.1
Rai1Q61818 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
Rai1Q61818 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Rai1Q61818 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC28.14■■■□□ 2.1
Rai1Q61818 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC28.14■■■□□ 2.1
Rai1Q61818 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC28.13■■■□□ 2.09
Rai1Q61818 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Rai1Q61818 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC28.05■■■□□ 2.08
Rai1Q61818 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
Rai1Q61818 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Rai1Q61818 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Rai1Q61818 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC27.98■■■□□ 2.07
Rai1Q61818 Gm42596-201ENSMUST00000196305 1958 ntBASIC27.96■■■□□ 2.07
Rai1Q61818 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Retrieved 100 of 76,532 protein–RNA pairs in 12.7 ms