Protein–RNA interactions for Protein: P51791

Clcn3, H(+)/Cl(-) exchange transporter 3, mousemouse

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3P51791 Gm25239-201ENSMUST00000174915 86 ntBASIC42.25■■■■■ 4.35
Clcn3P51791 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC39.05■■■■□ 3.84
Clcn3P51791 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.47■■■■□ 3.75
Clcn3P51791 Gm15042-201ENSMUST00000120212 883 ntBASIC36.96■■■■□ 3.51
Clcn3P51791 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC36.59■■■■□ 3.45
Clcn3P51791 Gm24109-201ENSMUST00000175489 103 ntBASIC36.59■■■■□ 3.45
Clcn3P51791 Gm15045-201ENSMUST00000117359 883 ntBASIC36.17■■■■□ 3.38
Clcn3P51791 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC35.89■■■■□ 3.34
Clcn3P51791 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.81■■■■□ 3.32
Clcn3P51791 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35.63■■■■□ 3.29
Clcn3P51791 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.37■■■■□ 3.25
Clcn3P51791 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC35.37■■■■□ 3.25
Clcn3P51791 Gm23366-201ENSMUST00000175022 89 ntBASIC35.26■■■■□ 3.24
Clcn3P51791 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC35.09■■■■□ 3.21
Clcn3P51791 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.13
Clcn3P51791 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
Clcn3P51791 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC34.32■■■■□ 3.08
Clcn3P51791 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC34.2■■■■□ 3.06
Clcn3P51791 AC153911.1-202ENSMUST00000218534 1034 ntBASIC34.1■■■■□ 3.05
Clcn3P51791 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC34.08■■■■□ 3.05
Clcn3P51791 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
Clcn3P51791 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33.92■■■■□ 3.02
Clcn3P51791 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC33.83■■■■□ 3.01
Clcn3P51791 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC33.81■■■■□ 3
Clcn3P51791 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
Clcn3P51791 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
Clcn3P51791 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC33.71■■■□□ 2.99
Clcn3P51791 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC33.7■■■□□ 2.99
Clcn3P51791 Psd-208ENSMUST00000224556 2034 ntBASIC33.67■■■□□ 2.98
Clcn3P51791 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC33.56■■■□□ 2.96
Clcn3P51791 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
Clcn3P51791 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
Clcn3P51791 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
Clcn3P51791 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC33.37■■■□□ 2.93
Clcn3P51791 Gm25238-201ENSMUST00000174914 89 ntBASIC33.33■■■□□ 2.93
Clcn3P51791 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33.25■■■□□ 2.91
Clcn3P51791 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
Clcn3P51791 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC32.96■■■□□ 2.87
Clcn3P51791 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
Clcn3P51791 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC32.73■■■□□ 2.83
Clcn3P51791 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
Clcn3P51791 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.64■■■□□ 2.82
Clcn3P51791 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
Clcn3P51791 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.53■■■□□ 2.8
Clcn3P51791 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
Clcn3P51791 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
Clcn3P51791 Gm27325-201ENSMUST00000175467 74 ntBASIC32.39■■■□□ 2.78
Clcn3P51791 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
Clcn3P51791 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32.33■■■□□ 2.77
Clcn3P51791 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC32.27■■■□□ 2.76
Clcn3P51791 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.24■■■□□ 2.75
Clcn3P51791 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32.16■■■□□ 2.74
Clcn3P51791 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32.16■■■□□ 2.74
Clcn3P51791 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC32.12■■■□□ 2.73
Clcn3P51791 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Clcn3P51791 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.97■■■□□ 2.71
Clcn3P51791 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
Clcn3P51791 Gm25262-201ENSMUST00000174934 133 ntBASIC31.86■■■□□ 2.69
Clcn3P51791 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Clcn3P51791 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
Clcn3P51791 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Clcn3P51791 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Clcn3P51791 Rab21-202ENSMUST00000218831 843 ntBASIC31.76■■■□□ 2.67
Clcn3P51791 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC31.71■■■□□ 2.67
Clcn3P51791 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Clcn3P51791 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.66■■■□□ 2.66
Clcn3P51791 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC31.55■■■□□ 2.64
Clcn3P51791 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Clcn3P51791 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC31.5■■■□□ 2.63
Clcn3P51791 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
Clcn3P51791 Gm10524-201ENSMUST00000181931 1893 ntBASIC31.48■■■□□ 2.63
Clcn3P51791 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
Clcn3P51791 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC31.47■■■□□ 2.63
Clcn3P51791 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Clcn3P51791 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Clcn3P51791 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Clcn3P51791 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31.4■■■□□ 2.62
Clcn3P51791 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31.39■■■□□ 2.62
Clcn3P51791 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31.37■■■□□ 2.61
Clcn3P51791 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Clcn3P51791 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
Clcn3P51791 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC31.3■■■□□ 2.6
Clcn3P51791 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
Clcn3P51791 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC31.25■■■□□ 2.59
Clcn3P51791 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
Clcn3P51791 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Clcn3P51791 CT025624.2-201ENSMUST00000223609 1909 ntBASIC31.19■■■□□ 2.58
Clcn3P51791 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Clcn3P51791 Gm42596-201ENSMUST00000196305 1958 ntBASIC31.16■■■□□ 2.58
Clcn3P51791 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Clcn3P51791 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC31.12■■■□□ 2.57
Clcn3P51791 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Clcn3P51791 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
Clcn3P51791 Gm26115-201ENSMUST00000175605 87 ntBASIC31.03■■■□□ 2.56
Clcn3P51791 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC31■■■□□ 2.55
Clcn3P51791 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
Clcn3P51791 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Clcn3P51791 Gm8109-201ENSMUST00000194076 746 ntBASIC30.93■■■□□ 2.54
Clcn3P51791 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
Clcn3P51791 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.89■■■□□ 2.54
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms