Protein–RNA interactions for Protein: P28660

Nckap1, Nck-associated protein 1, mousemouse

Known RBP Predictions only

Length 1,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nckap1P28660 Gm25239-201ENSMUST00000174915 86 ntBASIC38.46■■■■□ 3.75
Nckap1P28660 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC35.58■■■■□ 3.29
Nckap1P28660 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC35.17■■■■□ 3.22
Nckap1P28660 Gm15042-201ENSMUST00000120212 883 ntBASIC33.62■■■□□ 2.97
Nckap1P28660 Gm24109-201ENSMUST00000175489 103 ntBASIC33.31■■■□□ 2.92
Nckap1P28660 Gm15045-201ENSMUST00000117359 883 ntBASIC32.8■■■□□ 2.84
Nckap1P28660 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
Nckap1P28660 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Nckap1P28660 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC32.48■■■□□ 2.79
Nckap1P28660 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
Nckap1P28660 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
Nckap1P28660 Gm23366-201ENSMUST00000175022 89 ntBASIC32.19■■■□□ 2.74
Nckap1P28660 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
Nckap1P28660 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC31.69■■■□□ 2.66
Nckap1P28660 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Nckap1P28660 AC153911.1-202ENSMUST00000218534 1034 ntBASIC31.09■■■□□ 2.57
Nckap1P28660 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC31.08■■■□□ 2.57
Nckap1P28660 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Nckap1P28660 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC30.96■■■□□ 2.55
Nckap1P28660 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC30.94■■■□□ 2.54
Nckap1P28660 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC30.84■■■□□ 2.53
Nckap1P28660 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC30.81■■■□□ 2.52
Nckap1P28660 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Nckap1P28660 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Nckap1P28660 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Nckap1P28660 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC30.51■■■□□ 2.47
Nckap1P28660 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Nckap1P28660 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Nckap1P28660 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
Nckap1P28660 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC30.44■■■□□ 2.46
Nckap1P28660 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Nckap1P28660 Gm25238-201ENSMUST00000174914 89 ntBASIC30.34■■■□□ 2.45
Nckap1P28660 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Nckap1P28660 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC30.3■■■□□ 2.44
Nckap1P28660 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
Nckap1P28660 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
Nckap1P28660 Psd-208ENSMUST00000224556 2034 ntBASIC29.97■■■□□ 2.39
Nckap1P28660 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC29.82■■■□□ 2.36
Nckap1P28660 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC29.77■■■□□ 2.36
Nckap1P28660 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
Nckap1P28660 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC29.65■■■□□ 2.34
Nckap1P28660 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
Nckap1P28660 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC29.48■■■□□ 2.31
Nckap1P28660 Gm27325-201ENSMUST00000175467 74 ntBASIC29.44■■■□□ 2.3
Nckap1P28660 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC29.44■■■□□ 2.3
Nckap1P28660 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
Nckap1P28660 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
Nckap1P28660 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC29.34■■■□□ 2.29
Nckap1P28660 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Nckap1P28660 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
Nckap1P28660 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC29.26■■■□□ 2.28
Nckap1P28660 Gm25262-201ENSMUST00000174934 133 ntBASIC29.17■■■□□ 2.26
Nckap1P28660 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
Nckap1P28660 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC29.03■■■□□ 2.24
Nckap1P28660 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Nckap1P28660 Rab21-202ENSMUST00000218831 843 ntBASIC28.95■■■□□ 2.22
Nckap1P28660 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC28.92■■■□□ 2.22
Nckap1P28660 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC28.88■■■□□ 2.21
Nckap1P28660 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC28.88■■■□□ 2.21
Nckap1P28660 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Nckap1P28660 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Nckap1P28660 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Nckap1P28660 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
Nckap1P28660 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
Nckap1P28660 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC28.7■■■□□ 2.18
Nckap1P28660 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC28.69■■■□□ 2.18
Nckap1P28660 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
Nckap1P28660 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC28.61■■■□□ 2.17
Nckap1P28660 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC28.58■■■□□ 2.17
Nckap1P28660 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC28.54■■■□□ 2.16
Nckap1P28660 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC28.53■■■□□ 2.16
Nckap1P28660 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
Nckap1P28660 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Nckap1P28660 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC28.51■■■□□ 2.15
Nckap1P28660 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
Nckap1P28660 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC28.46■■■□□ 2.15
Nckap1P28660 Gm26115-201ENSMUST00000175605 87 ntBASIC28.46■■■□□ 2.15
Nckap1P28660 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Nckap1P28660 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC28.43■■■□□ 2.14
Nckap1P28660 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
Nckap1P28660 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Nckap1P28660 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Nckap1P28660 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Nckap1P28660 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.34■■■□□ 2.13
Nckap1P28660 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC28.33■■■□□ 2.13
Nckap1P28660 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Nckap1P28660 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Nckap1P28660 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Nckap1P28660 Gm8109-201ENSMUST00000194076 746 ntBASIC28.24■■■□□ 2.11
Nckap1P28660 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC28.23■■■□□ 2.11
Nckap1P28660 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC28.22■■■□□ 2.11
Nckap1P28660 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Nckap1P28660 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
Nckap1P28660 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC28.19■■■□□ 2.1
Nckap1P28660 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Nckap1P28660 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC28.14■■■□□ 2.1
Nckap1P28660 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC28.14■■■□□ 2.1
Nckap1P28660 CT025624.2-201ENSMUST00000223609 1909 ntBASIC28.11■■■□□ 2.09
Nckap1P28660 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
Nckap1P28660 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
Retrieved 100 of 76,532 protein–RNA pairs in 70.1 ms