Protein–RNA interactions for Protein: P04441

Cd74, H-2 class II histocompatibility antigen gamma chain, mousemouse

Predictions only

Length 279 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd74P04441 Gm25239-201ENSMUST00000174915 86 ntBASIC30.74■■■□□ 2.51
Cd74P04441 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
Cd74P04441 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Cd74P04441 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Cd74P04441 Gm15042-201ENSMUST00000120212 883 ntBASIC26.89■■□□□ 1.9
Cd74P04441 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Cd74P04441 Gm24109-201ENSMUST00000175489 103 ntBASIC26.6■■□□□ 1.85
Cd74P04441 Gm15045-201ENSMUST00000117359 883 ntBASIC26.2■■□□□ 1.78
Cd74P04441 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Cd74P04441 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
Cd74P04441 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Cd74P04441 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Cd74P04441 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
Cd74P04441 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Cd74P04441 Gm23366-201ENSMUST00000175022 89 ntBASIC25.76■■□□□ 1.71
Cd74P04441 Psd-208ENSMUST00000224556 2034 ntBASIC25.72■■□□□ 1.71
Cd74P04441 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Cd74P04441 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Cd74P04441 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC24.88■■□□□ 1.57
Cd74P04441 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Cd74P04441 AC153911.1-202ENSMUST00000218534 1034 ntBASIC24.81■■□□□ 1.56
Cd74P04441 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
Cd74P04441 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC24.72■■□□□ 1.55
Cd74P04441 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC24.62■■□□□ 1.53
Cd74P04441 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC24.61■■□□□ 1.53
Cd74P04441 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
Cd74P04441 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Cd74P04441 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
Cd74P04441 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Cd74P04441 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Cd74P04441 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
Cd74P04441 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Cd74P04441 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Cd74P04441 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Cd74P04441 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC24.37■■□□□ 1.49
Cd74P04441 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
Cd74P04441 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Cd74P04441 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Cd74P04441 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Cd74P04441 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Cd74P04441 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Cd74P04441 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Cd74P04441 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC24.22■■□□□ 1.47
Cd74P04441 Gm25238-201ENSMUST00000174914 89 ntBASIC24.22■■□□□ 1.47
Cd74P04441 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
Cd74P04441 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Cd74P04441 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Cd74P04441 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC24.09■■□□□ 1.45
Cd74P04441 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Cd74P04441 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
Cd74P04441 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC23.87■■□□□ 1.41
Cd74P04441 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC23.81■■□□□ 1.4
Cd74P04441 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Cd74P04441 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Cd74P04441 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC23.71■■□□□ 1.39
Cd74P04441 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Cd74P04441 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Cd74P04441 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC23.61■■□□□ 1.37
Cd74P04441 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
Cd74P04441 Gm42596-201ENSMUST00000196305 1958 ntBASIC23.56■■□□□ 1.36
Cd74P04441 Gm27325-201ENSMUST00000175467 74 ntBASIC23.55■■□□□ 1.36
Cd74P04441 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
Cd74P04441 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC23.48■■□□□ 1.35
Cd74P04441 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Cd74P04441 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC23.43■■□□□ 1.34
Cd74P04441 Gm25262-201ENSMUST00000174934 133 ntBASIC23.34■■□□□ 1.33
Cd74P04441 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC23.26■■□□□ 1.31
Cd74P04441 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Cd74P04441 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Cd74P04441 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC23.21■■□□□ 1.31
Cd74P04441 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC23.21■■□□□ 1.31
Cd74P04441 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cd74P04441 Rab21-202ENSMUST00000218831 843 ntBASIC23.18■■□□□ 1.3
Cd74P04441 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
Cd74P04441 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Cd74P04441 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Cd74P04441 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cd74P04441 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC23.12■■□□□ 1.29
Cd74P04441 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC23.08■■□□□ 1.28
Cd74P04441 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Cd74P04441 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC23.01■■□□□ 1.27
Cd74P04441 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Cd74P04441 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Cd74P04441 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC22.97■■□□□ 1.27
Cd74P04441 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Cd74P04441 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC22.94■■□□□ 1.26
Cd74P04441 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Cd74P04441 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
Cd74P04441 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
Cd74P04441 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC22.87■■□□□ 1.25
Cd74P04441 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Cd74P04441 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
Cd74P04441 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC22.84■■□□□ 1.25
Cd74P04441 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
Cd74P04441 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
Cd74P04441 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Cd74P04441 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
Cd74P04441 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Cd74P04441 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Cd74P04441 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
Retrieved 100 of 76,532 protein–RNA pairs in 15.1 ms