Protein–RNA interactions for Protein: A0A0A6YWV4

Trbc1, T cell receptor beta, constant region 1 (Fragment), mousemouse

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbc1A0A0A6YWV4 Gm25239-201ENSMUST00000174915 86 ntBASIC34.03■■■■□ 3.04
Trbc1A0A0A6YWV4 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
Trbc1A0A0A6YWV4 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Trbc1A0A0A6YWV4 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Trbc1A0A0A6YWV4 Gm15042-201ENSMUST00000120212 883 ntBASIC30.01■■■□□ 2.39
Trbc1A0A0A6YWV4 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
Trbc1A0A0A6YWV4 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC29.39■■■□□ 2.3
Trbc1A0A0A6YWV4 Gm24109-201ENSMUST00000175489 103 ntBASIC29.37■■■□□ 2.29
Trbc1A0A0A6YWV4 Gm15045-201ENSMUST00000117359 883 ntBASIC29.36■■■□□ 2.29
Trbc1A0A0A6YWV4 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
Trbc1A0A0A6YWV4 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Trbc1A0A0A6YWV4 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
Trbc1A0A0A6YWV4 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Trbc1A0A0A6YWV4 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
Trbc1A0A0A6YWV4 Gm23366-201ENSMUST00000175022 89 ntBASIC28.49■■■□□ 2.15
Trbc1A0A0A6YWV4 Psd-208ENSMUST00000224556 2034 ntBASIC28.46■■■□□ 2.15
Trbc1A0A0A6YWV4 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Trbc1A0A0A6YWV4 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Trbc1A0A0A6YWV4 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC28.22■■■□□ 2.11
Trbc1A0A0A6YWV4 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Trbc1A0A0A6YWV4 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
Trbc1A0A0A6YWV4 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC27.95■■■□□ 2.07
Trbc1A0A0A6YWV4 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC27.86■■■□□ 2.05
Trbc1A0A0A6YWV4 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
Trbc1A0A0A6YWV4 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC27.68■■■□□ 2.02
Trbc1A0A0A6YWV4 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC27.66■■■□□ 2.02
Trbc1A0A0A6YWV4 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC27.65■■■□□ 2.02
Trbc1A0A0A6YWV4 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
Trbc1A0A0A6YWV4 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC27.59■■■□□ 2.01
Trbc1A0A0A6YWV4 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
Trbc1A0A0A6YWV4 AC153911.1-202ENSMUST00000218534 1034 ntBASIC27.5■■□□□ 1.99
Trbc1A0A0A6YWV4 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Trbc1A0A0A6YWV4 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC27.18■■□□□ 1.94
Trbc1A0A0A6YWV4 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Trbc1A0A0A6YWV4 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC27.14■■□□□ 1.94
Trbc1A0A0A6YWV4 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Trbc1A0A0A6YWV4 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
Trbc1A0A0A6YWV4 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC26.98■■□□□ 1.91
Trbc1A0A0A6YWV4 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC26.95■■□□□ 1.9
Trbc1A0A0A6YWV4 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Trbc1A0A0A6YWV4 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Trbc1A0A0A6YWV4 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Trbc1A0A0A6YWV4 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Trbc1A0A0A6YWV4 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC26.78■■□□□ 1.88
Trbc1A0A0A6YWV4 Gm25238-201ENSMUST00000174914 89 ntBASIC26.76■■□□□ 1.87
Trbc1A0A0A6YWV4 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC26.73■■□□□ 1.87
Trbc1A0A0A6YWV4 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC26.73■■□□□ 1.87
Trbc1A0A0A6YWV4 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Trbc1A0A0A6YWV4 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
Trbc1A0A0A6YWV4 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Trbc1A0A0A6YWV4 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
Trbc1A0A0A6YWV4 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Trbc1A0A0A6YWV4 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Trbc1A0A0A6YWV4 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Trbc1A0A0A6YWV4 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC26.38■■□□□ 1.81
Trbc1A0A0A6YWV4 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC26.34■■□□□ 1.81
Trbc1A0A0A6YWV4 Gm27325-201ENSMUST00000175467 74 ntBASIC26.33■■□□□ 1.81
Trbc1A0A0A6YWV4 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC26.33■■□□□ 1.81
Trbc1A0A0A6YWV4 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Trbc1A0A0A6YWV4 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Trbc1A0A0A6YWV4 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Trbc1A0A0A6YWV4 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Trbc1A0A0A6YWV4 Gm10524-201ENSMUST00000181931 1893 ntBASIC26.14■■□□□ 1.78
Trbc1A0A0A6YWV4 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
Trbc1A0A0A6YWV4 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC26.11■■□□□ 1.77
Trbc1A0A0A6YWV4 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC26.06■■□□□ 1.76
Trbc1A0A0A6YWV4 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Trbc1A0A0A6YWV4 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Trbc1A0A0A6YWV4 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC26■■□□□ 1.75
Trbc1A0A0A6YWV4 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Trbc1A0A0A6YWV4 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC25.98■■□□□ 1.75
Trbc1A0A0A6YWV4 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
Trbc1A0A0A6YWV4 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Trbc1A0A0A6YWV4 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Trbc1A0A0A6YWV4 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC25.93■■□□□ 1.74
Trbc1A0A0A6YWV4 Gm42596-201ENSMUST00000196305 1958 ntBASIC25.92■■□□□ 1.74
Trbc1A0A0A6YWV4 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC25.92■■□□□ 1.74
Trbc1A0A0A6YWV4 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Trbc1A0A0A6YWV4 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
Trbc1A0A0A6YWV4 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
Trbc1A0A0A6YWV4 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Trbc1A0A0A6YWV4 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC25.83■■□□□ 1.73
Trbc1A0A0A6YWV4 CT025624.2-201ENSMUST00000223609 1909 ntBASIC25.75■■□□□ 1.71
Trbc1A0A0A6YWV4 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC25.74■■□□□ 1.71
Trbc1A0A0A6YWV4 Rab21-202ENSMUST00000218831 843 ntBASIC25.72■■□□□ 1.71
Trbc1A0A0A6YWV4 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Trbc1A0A0A6YWV4 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Trbc1A0A0A6YWV4 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC25.66■■□□□ 1.7
Trbc1A0A0A6YWV4 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Trbc1A0A0A6YWV4 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Trbc1A0A0A6YWV4 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC25.59■■□□□ 1.69
Trbc1A0A0A6YWV4 Gm25262-201ENSMUST00000174934 133 ntBASIC25.55■■□□□ 1.68
Trbc1A0A0A6YWV4 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
Trbc1A0A0A6YWV4 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Trbc1A0A0A6YWV4 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
Trbc1A0A0A6YWV4 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Trbc1A0A0A6YWV4 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
Trbc1A0A0A6YWV4 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
Trbc1A0A0A6YWV4 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC25.35■■□□□ 1.65
Trbc1A0A0A6YWV4 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Retrieved 100 of 76,532 protein–RNA pairs in 8.7 ms