Protein–RNA interactions for Protein: A0A075B650

Trav15-2-dv6-2, T cell receptor alpha variable 15-2-DV6-2 (Fragment), mousemouse

Predictions only

Length 123 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav15-2-dv6-2A0A075B650 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Trav15-2-dv6-2A0A075B650 Gm25239-201ENSMUST00000174915 86 ntBASIC28.02■■■□□ 2.08
Trav15-2-dv6-2A0A075B650 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC27.34■■□□□ 1.97
Trav15-2-dv6-2A0A075B650 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Trav15-2-dv6-2A0A075B650 Psd-208ENSMUST00000224556 2034 ntBASIC26.56■■□□□ 1.84
Trav15-2-dv6-2A0A075B650 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Trav15-2-dv6-2A0A075B650 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Trav15-2-dv6-2A0A075B650 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Trav15-2-dv6-2A0A075B650 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
Trav15-2-dv6-2A0A075B650 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
Trav15-2-dv6-2A0A075B650 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Trav15-2-dv6-2A0A075B650 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Trav15-2-dv6-2A0A075B650 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Trav15-2-dv6-2A0A075B650 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Trav15-2-dv6-2A0A075B650 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Trav15-2-dv6-2A0A075B650 Gm15042-201ENSMUST00000120212 883 ntBASIC25.26■■□□□ 1.63
Trav15-2-dv6-2A0A075B650 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC25.17■■□□□ 1.62
Trav15-2-dv6-2A0A075B650 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Trav15-2-dv6-2A0A075B650 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
Trav15-2-dv6-2A0A075B650 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
Trav15-2-dv6-2A0A075B650 Gm15045-201ENSMUST00000117359 883 ntBASIC24.84■■□□□ 1.57
Trav15-2-dv6-2A0A075B650 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Trav15-2-dv6-2A0A075B650 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
Trav15-2-dv6-2A0A075B650 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
Trav15-2-dv6-2A0A075B650 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
Trav15-2-dv6-2A0A075B650 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Trav15-2-dv6-2A0A075B650 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Trav15-2-dv6-2A0A075B650 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Trav15-2-dv6-2A0A075B650 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Trav15-2-dv6-2A0A075B650 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
Trav15-2-dv6-2A0A075B650 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC24.37■■□□□ 1.49
Trav15-2-dv6-2A0A075B650 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
Trav15-2-dv6-2A0A075B650 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC24.28■■□□□ 1.48
Trav15-2-dv6-2A0A075B650 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC24.24■■□□□ 1.47
Trav15-2-dv6-2A0A075B650 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
Trav15-2-dv6-2A0A075B650 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trav15-2-dv6-2A0A075B650 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Trav15-2-dv6-2A0A075B650 Gm10524-201ENSMUST00000181931 1893 ntBASIC24.01■■□□□ 1.43
Trav15-2-dv6-2A0A075B650 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Trav15-2-dv6-2A0A075B650 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Trav15-2-dv6-2A0A075B650 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Trav15-2-dv6-2A0A075B650 Gm24109-201ENSMUST00000175489 103 ntBASIC23.92■■□□□ 1.42
Trav15-2-dv6-2A0A075B650 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC23.87■■□□□ 1.41
Trav15-2-dv6-2A0A075B650 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC23.85■■□□□ 1.41
Trav15-2-dv6-2A0A075B650 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Trav15-2-dv6-2A0A075B650 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Trav15-2-dv6-2A0A075B650 Gm42596-201ENSMUST00000196305 1958 ntBASIC23.69■■□□□ 1.38
Trav15-2-dv6-2A0A075B650 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
Trav15-2-dv6-2A0A075B650 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Trav15-2-dv6-2A0A075B650 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
Trav15-2-dv6-2A0A075B650 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Trav15-2-dv6-2A0A075B650 Gm23366-201ENSMUST00000175022 89 ntBASIC23.5■■□□□ 1.35
Trav15-2-dv6-2A0A075B650 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Trav15-2-dv6-2A0A075B650 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
Trav15-2-dv6-2A0A075B650 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Trav15-2-dv6-2A0A075B650 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC23.45■■□□□ 1.35
Trav15-2-dv6-2A0A075B650 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Trav15-2-dv6-2A0A075B650 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Trav15-2-dv6-2A0A075B650 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Trav15-2-dv6-2A0A075B650 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
Trav15-2-dv6-2A0A075B650 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Trav15-2-dv6-2A0A075B650 CT025624.2-201ENSMUST00000223609 1909 ntBASIC23.3■■□□□ 1.32
Trav15-2-dv6-2A0A075B650 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
Trav15-2-dv6-2A0A075B650 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Trav15-2-dv6-2A0A075B650 AC153911.1-202ENSMUST00000218534 1034 ntBASIC23.22■■□□□ 1.31
Trav15-2-dv6-2A0A075B650 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Trav15-2-dv6-2A0A075B650 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Trav15-2-dv6-2A0A075B650 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trav15-2-dv6-2A0A075B650 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Trav15-2-dv6-2A0A075B650 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
Trav15-2-dv6-2A0A075B650 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trav15-2-dv6-2A0A075B650 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Trav15-2-dv6-2A0A075B650 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Trav15-2-dv6-2A0A075B650 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC23.04■■□□□ 1.28
Trav15-2-dv6-2A0A075B650 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Trav15-2-dv6-2A0A075B650 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Trav15-2-dv6-2A0A075B650 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Trav15-2-dv6-2A0A075B650 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
Trav15-2-dv6-2A0A075B650 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Trav15-2-dv6-2A0A075B650 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.24
Trav15-2-dv6-2A0A075B650 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC22.82■■□□□ 1.24
Trav15-2-dv6-2A0A075B650 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Trav15-2-dv6-2A0A075B650 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC22.78■■□□□ 1.24
Trav15-2-dv6-2A0A075B650 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Trav15-2-dv6-2A0A075B650 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Trav15-2-dv6-2A0A075B650 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Trav15-2-dv6-2A0A075B650 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
Trav15-2-dv6-2A0A075B650 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Trav15-2-dv6-2A0A075B650 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Trav15-2-dv6-2A0A075B650 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Trav15-2-dv6-2A0A075B650 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trav15-2-dv6-2A0A075B650 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Trav15-2-dv6-2A0A075B650 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Trav15-2-dv6-2A0A075B650 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC22.51■■□□□ 1.19
Trav15-2-dv6-2A0A075B650 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC22.49■■□□□ 1.19
Trav15-2-dv6-2A0A075B650 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Trav15-2-dv6-2A0A075B650 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Trav15-2-dv6-2A0A075B650 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Trav15-2-dv6-2A0A075B650 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Trav15-2-dv6-2A0A075B650 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms