Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc9Q8VC31 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc9Q8VC31 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc9Q8VC31 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc9Q8VC31 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc9Q8VC31 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc9Q8VC31 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc9Q8VC31 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc9Q8VC31 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc9Q8VC31 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ccdc9Q8VC31 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Ccdc9Q8VC31 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Ccdc9Q8VC31 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Gm37691-201ENSMUST00000192147 2573 ntBASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ccdc9Q8VC31 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Gm21451-201ENSMUST00000111062 2775 ntBASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ccdc9Q8VC31 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Gm7291-201ENSMUST00000199147 382 ntBASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Gm42555-201ENSMUST00000199304 1039 ntBASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ccdc9Q8VC31 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Gm6365-201ENSMUST00000054711 744 ntBASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ccdc9Q8VC31 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms