Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC12.9□□□□□ -0.34
Cdx1P18111 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Cdx1P18111 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC12.9□□□□□ -0.34
Cdx1P18111 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Cdx1P18111 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC12.9□□□□□ -0.34
Cdx1P18111 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC12.9□□□□□ -0.34
Cdx1P18111 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC12.9□□□□□ -0.34
Cdx1P18111 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC12.9□□□□□ -0.34
Cdx1P18111 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Cdx1P18111 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.35
Cdx1P18111 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Cdx1P18111 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Cdx1P18111 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Gm13559-201ENSMUST00000120476 863 ntBASIC12.89□□□□□ -0.35
Cdx1P18111 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC12.89□□□□□ -0.35
Cdx1P18111 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC12.89□□□□□ -0.35
Cdx1P18111 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC12.89□□□□□ -0.35
Cdx1P18111 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdx1P18111 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC12.89□□□□□ -0.35
Cdx1P18111 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Cdx1P18111 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Cdx1P18111 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Cdx1P18111 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 AC174678.1-201ENSMUST00000228007 2749 ntBASIC12.88□□□□□ -0.35
Cdx1P18111 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Cdx1P18111 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Cdx1P18111 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Gm3375-201ENSMUST00000203929 796 ntBASIC12.88□□□□□ -0.35
Cdx1P18111 AC166341.7-201ENSMUST00000221698 126 ntBASIC12.88□□□□□ -0.35
Cdx1P18111 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
Cdx1P18111 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC12.88□□□□□ -0.35
Cdx1P18111 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Cdx1P18111 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdx1P18111 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC12.88□□□□□ -0.35
Cdx1P18111 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
Cdx1P18111 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms