Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Col1a1P11087 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col1a1P11087 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col1a1P11087 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col1a1P11087 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col1a1P11087 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col1a1P11087 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC18.54■□□□□ 0.56
Col1a1P11087 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col1a1P11087 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Col1a1P11087 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
Col1a1P11087 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col1a1P11087 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col1a1P11087 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col1a1P11087 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC18.53■□□□□ 0.56
Col1a1P11087 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC18.53■□□□□ 0.56
Col1a1P11087 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC18.53■□□□□ 0.56
Col1a1P11087 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col1a1P11087 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col1a1P11087 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC18.53■□□□□ 0.56
Col1a1P11087 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col1a1P11087 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Col1a1P11087 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col1a1P11087 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col1a1P11087 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col1a1P11087 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col1a1P11087 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col1a1P11087 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Col1a1P11087 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Col1a1P11087 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC18.52■□□□□ 0.56
Col1a1P11087 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col1a1P11087 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Col1a1P11087 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Col1a1P11087 Gm10253-201ENSMUST00000194270 940 ntBASIC18.52■□□□□ 0.56
Col1a1P11087 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC18.52■□□□□ 0.56
Col1a1P11087 AC124732.2-201ENSMUST00000221977 316 ntBASIC18.52■□□□□ 0.56
Col1a1P11087 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Col1a1P11087 Nudt18-203ENSMUST00000228768 1578 ntBASIC18.52■□□□□ 0.56
Col1a1P11087 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col1a1P11087 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Col1a1P11087 Gm29361-201ENSMUST00000183323 2000 ntBASIC18.52■□□□□ 0.56
Col1a1P11087 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Col1a1P11087 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col1a1P11087 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col1a1P11087 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col1a1P11087 Gm13216-201ENSMUST00000117145 591 ntBASIC18.52■□□□□ 0.55
Col1a1P11087 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC18.52■□□□□ 0.55
Col1a1P11087 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col1a1P11087 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
Col1a1P11087 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
Col1a1P11087 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
Col1a1P11087 Gm27622-201ENSMUST00000183779 60 ntBASIC18.52■□□□□ 0.55
Col1a1P11087 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Col1a1P11087 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC18.52■□□□□ 0.55
Col1a1P11087 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col1a1P11087 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col1a1P11087 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Col1a1P11087 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col1a1P11087 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col1a1P11087 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Col1a1P11087 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col1a1P11087 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col1a1P11087 Gm15635-204ENSMUST00000208024 2539 ntBASIC18.51■□□□□ 0.55
Col1a1P11087 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC18.51■□□□□ 0.55
Col1a1P11087 AC126250.1-201ENSMUST00000228343 1768 ntBASIC18.51■□□□□ 0.55
Col1a1P11087 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.51■□□□□ 0.55
Col1a1P11087 Gm25287-201ENSMUST00000103846 110 ntBASIC18.51■□□□□ 0.55
Col1a1P11087 Gm22918-201ENSMUST00000103855 110 ntBASIC18.51■□□□□ 0.55
Col1a1P11087 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC18.51■□□□□ 0.55
Col1a1P11087 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
Col1a1P11087 Gm7774-201ENSMUST00000200064 533 ntBASIC18.51■□□□□ 0.55
Col1a1P11087 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC18.51■□□□□ 0.55
Col1a1P11087 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC18.51■□□□□ 0.55
Col1a1P11087 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col1a1P11087 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC18.5■□□□□ 0.55
Col1a1P11087 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC18.5■□□□□ 0.55
Col1a1P11087 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Col1a1P11087 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC18.5■□□□□ 0.55
Col1a1P11087 CT025626.1-201ENSMUST00000223735 1455 ntBASIC18.5■□□□□ 0.55
Col1a1P11087 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Col1a1P11087 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Col1a1P11087 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col1a1P11087 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Col1a1P11087 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC18.5■□□□□ 0.55
Col1a1P11087 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col1a1P11087 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col1a1P11087 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col1a1P11087 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col1a1P11087 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col1a1P11087 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col1a1P11087 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC18.49■□□□□ 0.55
Col1a1P11087 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col1a1P11087 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Col1a1P11087 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col1a1P11087 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col1a1P11087 AC154767.3-201ENSMUST00000225150 1342 ntBASIC18.49■□□□□ 0.55
Col1a1P11087 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col1a1P11087 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
Col1a1P11087 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col1a1P11087 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC18.49■□□□□ 0.55
Col1a1P11087 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms