Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Hoxd3P09027 A530030E21Rik-201ENSMUST00000199551 1310 ntBASIC12.37□□□□□ -0.43
Hoxd3P09027 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
Hoxd3P09027 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Gm12106-201ENSMUST00000116006 1200 ntBASIC12.37□□□□□ -0.43
Hoxd3P09027 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC12.37□□□□□ -0.43
Hoxd3P09027 Gm20614-201ENSMUST00000177106 632 ntBASIC12.37□□□□□ -0.43
Hoxd3P09027 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Hoxd3P09027 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC12.37□□□□□ -0.43
Hoxd3P09027 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC12.37□□□□□ -0.43
Hoxd3P09027 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC12.37□□□□□ -0.43
Hoxd3P09027 Gm44771-201ENSMUST00000206975 626 ntBASIC12.37□□□□□ -0.43
Hoxd3P09027 Gm7506-201ENSMUST00000207758 815 ntBASIC12.37□□□□□ -0.43
Hoxd3P09027 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC12.37□□□□□ -0.43
Hoxd3P09027 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Hoxd3P09027 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Klk1b7-ps-201ENSMUST00000078897 448 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Gm37744-201ENSMUST00000194616 1590 ntBASIC12.37□□□□□ -0.43
Hoxd3P09027 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Hoxd3P09027 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC12.37□□□□□ -0.43
Hoxd3P09027 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Hoxd3P09027 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Hoxd3P09027 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC12.36□□□□□ -0.43
Hoxd3P09027 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC12.36□□□□□ -0.43
Hoxd3P09027 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC12.36□□□□□ -0.43
Hoxd3P09027 Gm9172-201ENSMUST00000212092 954 ntBASIC12.36□□□□□ -0.43
Hoxd3P09027 Rbfox2-207ENSMUST00000227533 1041 ntBASIC12.36□□□□□ -0.43
Hoxd3P09027 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC12.36□□□□□ -0.43
Hoxd3P09027 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC12.36□□□□□ -0.43
Hoxd3P09027 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC12.36□□□□□ -0.43
Hoxd3P09027 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC12.36□□□□□ -0.43
Hoxd3P09027 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Hoxd3P09027 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC12.35□□□□□ -0.43
Hoxd3P09027 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC12.35□□□□□ -0.43
Hoxd3P09027 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Hoxd3P09027 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Hoxd3P09027 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Hoxd3P09027 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Hoxd3P09027 Gm12497-201ENSMUST00000138778 237 ntBASIC12.35□□□□□ -0.43
Hoxd3P09027 Gm25406-201ENSMUST00000157599 105 ntBASIC12.35□□□□□ -0.43
Hoxd3P09027 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC12.35□□□□□ -0.43
Hoxd3P09027 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Hoxd3P09027 Gm44357-201ENSMUST00000195897 142 ntBASIC12.35□□□□□ -0.43
Hoxd3P09027 Gm19658-201ENSMUST00000196231 138 ntBASIC12.35□□□□□ -0.43
Hoxd3P09027 Gm44367-201ENSMUST00000196836 138 ntBASIC12.35□□□□□ -0.43
Hoxd3P09027 Gm44350-201ENSMUST00000197197 138 ntBASIC12.35□□□□□ -0.43
Hoxd3P09027 Gm44390-201ENSMUST00000197533 144 ntBASIC12.35□□□□□ -0.43
Hoxd3P09027 Gm42660-201ENSMUST00000197733 947 ntBASIC12.35□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms