Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.14□□□□□ -2.59
SHANK1Q9Y566 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.14□□□□□ -2.59
SHANK1Q9Y566 RNA5SP225-201ENST00000410874 135 ntBASIC-1.14□□□□□ -2.59
SHANK1Q9Y566 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.14□□□□□ -2.59
SHANK1Q9Y566 Y_RNA.379-201ENST00000365653 102 ntBASIC-1.15□□□□□ -2.59
SHANK1Q9Y566 SNORD45.2-201ENST00000363552 72 ntBASIC-1.15□□□□□ -2.59
SHANK1Q9Y566 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.15□□□□□ -2.59
SHANK1Q9Y566 Y_RNA.685-201ENST00000516532 108 ntBASIC-1.15□□□□□ -2.59
SHANK1Q9Y566 MIR4317-201ENST00000637586 65 ntBASIC-1.15□□□□□ -2.59
SHANK1Q9Y566 Y_RNA.206-201ENST00000364136 102 ntBASIC-1.16□□□□□ -2.6
SHANK1Q9Y566 RNU6-1340P-201ENST00000384438 107 ntBASIC-1.17□□□□□ -2.6
SHANK1Q9Y566 Y_RNA.566-201ENST00000384735 101 ntBASIC-1.17□□□□□ -2.6
SHANK1Q9Y566 SNORD115-45-201ENST00000391078 81 ntBASIC-1.17□□□□□ -2.6
SHANK1Q9Y566 RNU6-808P-201ENST00000391233 108 ntBASIC-1.17□□□□□ -2.6
SHANK1Q9Y566 MIR1254-1-201ENST00000408257 97 ntBASIC-1.17□□□□□ -2.6
SHANK1Q9Y566 RNU6-231P-201ENST00000517122 103 ntBASIC-1.17□□□□□ -2.6
SHANK1Q9Y566 RNU6-854P-201ENST00000364036 107 ntBASIC-1.18□□□□□ -2.6
SHANK1Q9Y566 RNU6-471P-201ENST00000383944 106 ntBASIC-1.18□□□□□ -2.6
SHANK1Q9Y566 Y_RNA.652-201ENST00000458902 102 ntBASIC-1.18□□□□□ -2.6
SHANK1Q9Y566 SNORD114-13-201ENST00000364377 74 ntBASIC-1.18□□□□□ -2.6
SHANK1Q9Y566 Y_RNA.266-201ENST00000364678 96 ntBASIC-1.18□□□□□ -2.6
SHANK1Q9Y566 RNU6-1275P-201ENST00000391087 107 ntBASIC-1.18□□□□□ -2.6
SHANK1Q9Y566 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.18□□□□□ -2.6
SHANK1Q9Y566 RNU6-742P-201ENST00000365289 107 ntBASIC-1.19□□□□□ -2.6
SHANK1Q9Y566 AC103706.3-201ENST00000636297 85 ntBASIC-1.19□□□□□ -2.6
SHANK1Q9Y566 Y_RNA.134-201ENST00000363435 105 ntBASIC-1.2□□□□□ -2.6
SHANK1Q9Y566 RNU6-737P-201ENST00000365370 107 ntBASIC-1.2□□□□□ -2.6
SHANK1Q9Y566 MIR656-201ENST00000385224 78 ntBASIC-1.2□□□□□ -2.6
SHANK1Q9Y566 MIR4662A-201ENST00000637499 67 ntBASIC-1.2□□□□□ -2.6
SHANK1Q9Y566 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.2□□□□□ -2.6
SHANK1Q9Y566 Y_RNA.612-201ENST00000410717 95 ntBASIC-1.2□□□□□ -2.6
SHANK1Q9Y566 MIR548X-201ENST00000580069 75 ntBASIC-1.2□□□□□ -2.6
SHANK1Q9Y566 AL359920.1-201ENST00000618332 176 ntBASIC-1.2□□□□□ -2.6
SHANK1Q9Y566 RNA5SP106-201ENST00000517274 100 ntBASIC-1.21□□□□□ -2.6
SHANK1Q9Y566 RNU6-573P-201ENST00000383938 106 ntBASIC-1.22□□□□□ -2.6
SHANK1Q9Y566 MIR509-1-201ENST00000385265 94 ntBASIC-1.22□□□□□ -2.6
SHANK1Q9Y566 MIR509-2-201ENST00000390724 91 ntBASIC-1.22□□□□□ -2.6
SHANK1Q9Y566 SNORD30.1-201ENST00000391309 70 ntBASIC-1.22□□□□□ -2.6
SHANK1Q9Y566 AC110620.1-201ENST00000416042 228 ntBASIC-1.22□□□□□ -2.6
SHANK1Q9Y566 Y_RNA.658-201ENST00000515990 97 ntBASIC-1.22□□□□□ -2.6
SHANK1Q9Y566 MIR548AL-201ENST00000578416 97 ntBASIC-1.22□□□□□ -2.6
SHANK1Q9Y566 RNU6-1277P-201ENST00000364561 107 ntBASIC-1.23□□□□□ -2.61
SHANK1Q9Y566 MIR124-1-201ENST00000385275 85 ntBASIC-1.23□□□□□ -2.61
SHANK1Q9Y566 SNORD45C-201ENST00000383893 79 ntBASIC-1.24□□□□□ -2.61
SHANK1Q9Y566 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.24□□□□□ -2.61
SHANK1Q9Y566 RNU6-776P-201ENST00000364403 104 ntBASIC-1.24□□□□□ -2.61
SHANK1Q9Y566 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.24□□□□□ -2.61
SHANK1Q9Y566 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.24□□□□□ -2.61
SHANK1Q9Y566 AL451105.1-201ENST00000450005 189 ntBASIC-1.25□□□□□ -2.61
SHANK1Q9Y566 U6.111-201ENST00000636093 83 ntBASIC-1.25□□□□□ -2.61
SHANK1Q9Y566 Y_RNA.345-201ENST00000365384 92 ntBASIC-1.26□□□□□ -2.61
SHANK1Q9Y566 RNU6-1043P-201ENST00000410355 99 ntBASIC-1.27□□□□□ -2.61
SHANK1Q9Y566 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.27□□□□□ -2.61
SHANK1Q9Y566 Y_RNA.565-201ENST00000384719 101 ntBASIC-1.28□□□□□ -2.61
SHANK1Q9Y566 MIR545-201ENST00000385085 106 ntBASIC-1.28□□□□□ -2.61
SHANK1Q9Y566 MIR548AH-201ENST00000637109 76 ntBASIC-1.28□□□□□ -2.61
SHANK1Q9Y566 RNU4-33P-201ENST00000364316 85 ntBASIC-1.28□□□□□ -2.61
SHANK1Q9Y566 RNU6-1044P-201ENST00000384755 107 ntBASIC-1.28□□□□□ -2.61
SHANK1Q9Y566 Y_RNA.657-201ENST00000515983 102 ntBASIC-1.28□□□□□ -2.61
SHANK1Q9Y566 SNORD115.2-201ENST00000391126 59 ntBASIC-1.29□□□□□ -2.62
SHANK1Q9Y566 RNY4P10-201ENST00000365571 96 ntBASIC-1.3□□□□□ -2.62
SHANK1Q9Y566 RNU6-1161P-201ENST00000516176 102 ntBASIC-1.3□□□□□ -2.62
SHANK1Q9Y566 RNU6-788P-201ENST00000390967 104 ntBASIC-1.31□□□□□ -2.62
SHANK1Q9Y566 AC139453.2-201ENST00000487255 133 ntBASIC-1.32□□□□□ -2.62
SHANK1Q9Y566 RNU6-122P-201ENST00000516818 107 ntBASIC-1.32□□□□□ -2.62
SHANK1Q9Y566 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.32□□□□□ -2.62
SHANK1Q9Y566 RNU6-665P-201ENST00000384639 107 ntBASIC-1.33□□□□□ -2.62
SHANK1Q9Y566 Y_RNA.663-201ENST00000516043 101 ntBASIC-1.34□□□□□ -2.62
SHANK1Q9Y566 Y_RNA.406-201ENST00000383984 100 ntBASIC-1.34□□□□□ -2.62
SHANK1Q9Y566 Y_RNA.137-201ENST00000363455 112 ntBASIC-1.36□□□□□ -2.63
SHANK1Q9Y566 RNU4-85P-201ENST00000364675 123 ntBASIC-1.37□□□□□ -2.63
SHANK1Q9Y566 AC114801.3-201ENST00000510231 177 ntBASIC-1.37□□□□□ -2.63
SHANK1Q9Y566 RNU6-422P-201ENST00000384632 107 ntBASIC-1.38□□□□□ -2.63
SHANK1Q9Y566 RNU6-419P-201ENST00000517030 63 ntBASIC-1.38□□□□□ -2.63
SHANK1Q9Y566 RNU6-1204P-201ENST00000363948 107 ntBASIC-1.39□□□□□ -2.63
SHANK1Q9Y566 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.39□□□□□ -2.63
SHANK1Q9Y566 SNORA72.7-201ENST00000516349 94 ntBASIC-1.39□□□□□ -2.63
SHANK1Q9Y566 RNU6-446P-201ENST00000362827 106 ntBASIC-1.41□□□□□ -2.63
SHANK1Q9Y566 RNU6-829P-201ENST00000363700 112 ntBASIC-1.42□□□□□ -2.64
SHANK1Q9Y566 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.42□□□□□ -2.64
SHANK1Q9Y566 MIR363-201ENST00000384840 75 ntBASIC-1.44□□□□□ -2.64
SHANK1Q9Y566 RNA5SP449-201ENST00000516871 130 ntBASIC-1.44□□□□□ -2.64
SHANK1Q9Y566 RNU6-986P-201ENST00000363133 102 ntBASIC-1.45□□□□□ -2.64
SHANK1Q9Y566 RNU6-836P-201ENST00000362920 107 ntBASIC-1.45□□□□□ -2.64
SHANK1Q9Y566 RNU6-1326P-201ENST00000391262 107 ntBASIC-1.46□□□□□ -2.64
SHANK1Q9Y566 AC125388.1-201ENST00000459631 156 ntBASIC-1.47□□□□□ -2.64
SHANK1Q9Y566 SNORD113-4-201ENST00000364802 75 ntBASIC-1.48□□□□□ -2.65
SHANK1Q9Y566 RNU6-838P-201ENST00000363399 108 ntBASIC-1.48□□□□□ -2.65
SHANK1Q9Y566 RNU6-485P-201ENST00000363475 107 ntBASIC-1.48□□□□□ -2.65
SHANK1Q9Y566 RNU6-59P-201ENST00000384787 107 ntBASIC-1.49□□□□□ -2.65
SHANK1Q9Y566 Y_RNA.520-201ENST00000384556 102 ntBASIC-1.51□□□□□ -2.65
SHANK1Q9Y566 RNY4P13-201ENST00000384284 96 ntBASIC-1.52□□□□□ -2.65
SHANK1Q9Y566 RNU6-930P-201ENST00000390938 100 ntBASIC-1.52□□□□□ -2.65
SHANK1Q9Y566 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.55□□□□□ -2.66
SHANK1Q9Y566 RNU6-894P-201ENST00000517094 105 ntBASIC-1.56□□□□□ -2.66
SHANK1Q9Y566 RNU6-1128P-201ENST00000362825 109 ntBASIC-1.57□□□□□ -2.66
SHANK1Q9Y566 RNU6-936P-201ENST00000384005 107 ntBASIC-1.57□□□□□ -2.66
SHANK1Q9Y566 RNU6-499P-201ENST00000365615 107 ntBASIC-1.58□□□□□ -2.66
SHANK1Q9Y566 Y_RNA.165-201ENST00000363721 102 ntBASIC-1.59□□□□□ -2.66
SHANK1Q9Y566 MIR633-201ENST00000384821 98 ntBASIC-1.59□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms