Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 Y_RNA.663-201ENST00000516043 101 ntBASIC-3.16□□□□□ -2.92
SCN3AQ9NY46 Y_RNA.260-201ENST00000364628 101 ntBASIC-3.17□□□□□ -2.92
SCN3AQ9NY46 SNORD20-201ENST00000384550 80 ntBASIC-3.17□□□□□ -2.92
SCN3AQ9NY46 RNU6-871P-201ENST00000516122 100 ntBASIC-3.17□□□□□ -2.92
SCN3AQ9NY46 SNORD30.1-201ENST00000391309 70 ntBASIC-3.18□□□□□ -2.92
SCN3AQ9NY46 RNU6-294P-201ENST00000364999 102 ntBASIC-3.19□□□□□ -2.92
SCN3AQ9NY46 RNY4P13-201ENST00000384284 96 ntBASIC-3.2□□□□□ -2.92
SCN3AQ9NY46 MIR656-201ENST00000385224 78 ntBASIC-3.2□□□□□ -2.92
SCN3AQ9NY46 RNU6-820P-201ENST00000384273 107 ntBASIC-3.2□□□□□ -2.92
SCN3AQ9NY46 RNU6-808P-201ENST00000391233 108 ntBASIC-3.21□□□□□ -2.92
SCN3AQ9NY46 RNU6-1340P-201ENST00000384438 107 ntBASIC-3.22□□□□□ -2.92
SCN3AQ9NY46 MIR1255A-201ENST00000408338 113 ntBASIC-3.22□□□□□ -2.92
SCN3AQ9NY46 Y_RNA.722-201ENST00000517279 114 ntBASIC-3.22□□□□□ -2.92
SCN3AQ9NY46 MIR494-201ENST00000349529 81 ntBASIC-3.22□□□□□ -2.93
SCN3AQ9NY46 MIR3910-1-201ENST00000580936 111 ntBASIC-3.23□□□□□ -2.93
SCN3AQ9NY46 RNU6-776P-201ENST00000364403 104 ntBASIC-3.24□□□□□ -2.93
SCN3AQ9NY46 RNU6-1022P-201ENST00000365049 104 ntBASIC-3.24□□□□□ -2.93
SCN3AQ9NY46 MIR124-1-201ENST00000385275 85 ntBASIC-3.24□□□□□ -2.93
SCN3AQ9NY46 RNU6-313P-201ENST00000516317 112 ntBASIC-3.24□□□□□ -2.93
SCN3AQ9NY46 RNU6-471P-201ENST00000383944 106 ntBASIC-3.25□□□□□ -2.93
SCN3AQ9NY46 Y_RNA.137-201ENST00000363455 112 ntBASIC-3.26□□□□□ -2.93
SCN3AQ9NY46 RNU6-279P-201ENST00000391297 101 ntBASIC-3.26□□□□□ -2.93
SCN3AQ9NY46 AC139453.2-201ENST00000487255 133 ntBASIC-3.27□□□□□ -2.93
SCN3AQ9NY46 RNU6-854P-201ENST00000364036 107 ntBASIC-3.28□□□□□ -2.93
SCN3AQ9NY46 RNU4-33P-201ENST00000364316 85 ntBASIC-3.28□□□□□ -2.93
SCN3AQ9NY46 RNU6-1255P-201ENST00000363434 112 ntBASIC-3.29□□□□□ -2.94
SCN3AQ9NY46 RNU6-1161P-201ENST00000516176 102 ntBASIC-3.29□□□□□ -2.94
SCN3AQ9NY46 RNU6-242P-201ENST00000384359 107 ntBASIC-3.29□□□□□ -2.94
SCN3AQ9NY46 SNORD115.2-201ENST00000391126 59 ntBASIC-3.29□□□□□ -2.94
SCN3AQ9NY46 MIR3202-2-201ENST00000635980 79 ntBASIC-3.29□□□□□ -2.94
SCN3AQ9NY46 RNU6-44P-201ENST00000384045 107 ntBASIC-3.31□□□□□ -2.94
SCN3AQ9NY46 AC099654.10-201ENST00000640395 161 ntBASIC-3.31□□□□□ -2.94
SCN3AQ9NY46 MIR548AH-201ENST00000637109 76 ntBASIC-3.32□□□□□ -2.94
SCN3AQ9NY46 Y_RNA.81-201ENST00000362997 102 ntBASIC-3.34□□□□□ -2.94
SCN3AQ9NY46 RNU6-836P-201ENST00000362920 107 ntBASIC-3.37□□□□□ -2.95
SCN3AQ9NY46 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-3.37□□□□□ -2.95
SCN3AQ9NY46 U6.111-201ENST00000636093 83 ntBASIC-3.37□□□□□ -2.95
SCN3AQ9NY46 RNU6-215P-201ENST00000365169 102 ntBASIC-3.37□□□□□ -2.95
SCN3AQ9NY46 RNU6-1312P-201ENST00000362425 108 ntBASIC-3.38□□□□□ -2.95
SCN3AQ9NY46 RNU6-857P-201ENST00000515893 110 ntBASIC-3.38□□□□□ -2.95
SCN3AQ9NY46 SNORD113-1-201ENST00000365321 69 ntBASIC-3.39□□□□□ -2.95
SCN3AQ9NY46 RNU6-1008P-201ENST00000384160 104 ntBASIC-3.4□□□□□ -2.95
SCN3AQ9NY46 AL606753.1-201ENST00000427435 87 ntBASIC-3.41□□□□□ -2.96
SCN3AQ9NY46 Y_RNA.335-201ENST00000365299 96 ntBASIC-3.42□□□□□ -2.96
SCN3AQ9NY46 Y_RNA.345-201ENST00000365384 92 ntBASIC-3.42□□□□□ -2.96
SCN3AQ9NY46 AC114801.3-201ENST00000510231 177 ntBASIC-3.42□□□□□ -2.96
SCN3AQ9NY46 snosnR66.1-201ENST00000391095 99 ntBASIC-3.43□□□□□ -2.96
SCN3AQ9NY46 Y_RNA.694-201ENST00000516677 117 ntBASIC-3.44□□□□□ -2.96
SCN3AQ9NY46 Y_RNA.369-201ENST00000365568 117 ntBASIC-3.44□□□□□ -2.96
SCN3AQ9NY46 MIR5582-201ENST00000579697 68 ntBASIC-3.45□□□□□ -2.96
SCN3AQ9NY46 RNU6-788P-201ENST00000390967 104 ntBASIC-3.46□□□□□ -2.96
SCN3AQ9NY46 MIR3671-201ENST00000580455 88 ntBASIC-3.46□□□□□ -2.96
SCN3AQ9NY46 MIR363-201ENST00000384840 75 ntBASIC-3.46□□□□□ -2.96
SCN3AQ9NY46 Y_RNA.379-201ENST00000365653 102 ntBASIC-3.48□□□□□ -2.97
SCN3AQ9NY46 RNU6-422P-201ENST00000384632 107 ntBASIC-3.48□□□□□ -2.97
SCN3AQ9NY46 SNORA26.2-201ENST00000390922 122 ntBASIC-3.49□□□□□ -2.97
SCN3AQ9NY46 MIR545-201ENST00000385085 106 ntBASIC-3.49□□□□□ -2.97
SCN3AQ9NY46 RNU6-153P-201ENST00000364422 104 ntBASIC-3.5□□□□□ -2.97
SCN3AQ9NY46 RNU6-1204P-201ENST00000363948 107 ntBASIC-3.51□□□□□ -2.97
SCN3AQ9NY46 RNU6-1326P-201ENST00000391262 107 ntBASIC-3.53□□□□□ -2.97
SCN3AQ9NY46 RNU6-446P-201ENST00000362827 106 ntBASIC-3.53□□□□□ -2.97
SCN3AQ9NY46 RNU4-85P-201ENST00000364675 123 ntBASIC-3.53□□□□□ -2.97
SCN3AQ9NY46 MIR3668-201ENST00000582138 75 ntBASIC-3.54□□□□□ -2.98
SCN3AQ9NY46 Y_RNA.386-201ENST00000383913 105 ntBASIC-3.56□□□□□ -2.98
SCN3AQ9NY46 Y_RNA.406-201ENST00000383984 100 ntBASIC-3.56□□□□□ -2.98
SCN3AQ9NY46 SNORD113-4-201ENST00000364802 75 ntBASIC-3.61□□□□□ -2.99
SCN3AQ9NY46 RNU6-406P-201ENST00000516470 107 ntBASIC-3.63□□□□□ -2.99
SCN3AQ9NY46 Y_RNA.565-201ENST00000384719 101 ntBASIC-3.63□□□□□ -2.99
SCN3AQ9NY46 MT-TR-201ENST00000387439 65 ntBASIC-3.63□□□□□ -2.99
SCN3AQ9NY46 RNU6-1043P-201ENST00000410355 99 ntBASIC-3.63□□□□□ -2.99
SCN3AQ9NY46 RNU6-829P-201ENST00000363700 112 ntBASIC-3.65□□□□□ -2.99
SCN3AQ9NY46 Y_RNA.388-201ENST00000383919 113 ntBASIC-3.65□□□□□ -2.99
SCN3AQ9NY46 MIR4662A-201ENST00000637499 67 ntBASIC-3.65□□□□□ -2.99
SCN3AQ9NY46 RNU6-59P-201ENST00000384787 107 ntBASIC-3.7□□□□□ -3
SCN3AQ9NY46 SNORD78.1-201ENST00000390866 65 ntBASIC-3.7□□□□□ -3
SCN3AQ9NY46 RNY4P29-201ENST00000410801 97 ntBASIC-3.7□□□□□ -3
SCN3AQ9NY46 RNA5SP225-201ENST00000410874 135 ntBASIC-3.71□□□□□ -3
SCN3AQ9NY46 RNA5SP449-201ENST00000516871 130 ntBASIC-3.71□□□□□ -3
SCN3AQ9NY46 RNU6-573P-201ENST00000383938 106 ntBASIC-3.73□□□□□ -3.01
SCN3AQ9NY46 RNU6-838P-201ENST00000363399 108 ntBASIC-3.73□□□□□ -3.01
SCN3AQ9NY46 MIR633-201ENST00000384821 98 ntBASIC-3.76□□□□□ -3.01
SCN3AQ9NY46 SNORD73B-201ENST00000364394 72 ntBASIC-3.78□□□□□ -3.01
SCN3AQ9NY46 RNU6-1298P-201ENST00000362456 101 ntBASIC-3.8□□□□□ -3.02
SCN3AQ9NY46 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-3.82□□□□□ -3.02
SCN3AQ9NY46 MIR1302-4-201ENST00000408701 150 ntBASIC-3.83□□□□□ -3.02
SCN3AQ9NY46 RNU6-986P-201ENST00000363133 102 ntBASIC-3.86□□□□□ -3.03
SCN3AQ9NY46 Y_RNA.165-201ENST00000363721 102 ntBASIC-3.89□□□□□ -3.03
SCN3AQ9NY46 RNU6-916P-201ENST00000516088 109 ntBASIC-3.9□□□□□ -3.03
SCN3AQ9NY46 RNU6-753P-201ENST00000363926 107 ntBASIC-3.94□□□□□ -3.04
SCN3AQ9NY46 Y_RNA.685-201ENST00000516532 108 ntBASIC-3.94□□□□□ -3.04
SCN3AQ9NY46 RNU6-499P-201ENST00000365615 107 ntBASIC-3.95□□□□□ -3.04
SCN3AQ9NY46 AC125388.1-201ENST00000459631 156 ntBASIC-3.96□□□□□ -3.04
SCN3AQ9NY46 RNA5SP170-201ENST00000517150 101 ntBASIC-3.96□□□□□ -3.04
SCN3AQ9NY46 AL603908.1-201ENST00000406098 201 ntBASIC-3.97□□□□□ -3.05
SCN3AQ9NY46 RNU6-1275P-201ENST00000391087 107 ntBASIC-4.02□□□□□ -3.05
SCN3AQ9NY46 RNU6-936P-201ENST00000384005 107 ntBASIC-4.05□□□□□ -3.06
SCN3AQ9NY46 DLEU2_4.2-201ENST00000616613 58 ntBASIC-4.07□□□□□ -3.06
SCN3AQ9NY46 RNU6-930P-201ENST00000390938 100 ntBASIC-4.07□□□□□ -3.06
SCN3AQ9NY46 RNU6-627P-201ENST00000364032 102 ntBASIC-4.08□□□□□ -3.06
SCN3AQ9NY46 RNU6-614P-201ENST00000384369 107 ntBASIC-4.08□□□□□ -3.06
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms