Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 SNX3P1Y-201ENST00000615757 176 ntBASIC-3.79□□□□□ -3.02
CHMP4AQ9BY43 MIR548X-201ENST00000580069 75 ntBASIC-3.81□□□□□ -3.02
CHMP4AQ9BY43 Y_RNA.434-201ENST00000384090 100 ntBASIC-3.82□□□□□ -3.02
CHMP4AQ9BY43 AC114801.3-201ENST00000510231 177 ntBASIC-3.83□□□□□ -3.02
CHMP4AQ9BY43 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-3.84□□□□□ -3.02
CHMP4AQ9BY43 Y_RNA.685-201ENST00000516532 108 ntBASIC-3.85□□□□□ -3.03
CHMP4AQ9BY43 RNU6-1312P-201ENST00000362425 108 ntBASIC-3.87□□□□□ -3.03
CHMP4AQ9BY43 MIR1254-1-201ENST00000408257 97 ntBASIC-3.87□□□□□ -3.03
CHMP4AQ9BY43 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-3.87□□□□□ -3.03
CHMP4AQ9BY43 RNU6-345P-201ENST00000517001 107 ntBASIC-3.89□□□□□ -3.03
CHMP4AQ9BY43 Y_RNA.59-201ENST00000362828 102 ntBASIC-3.95□□□□□ -3.04
CHMP4AQ9BY43 RNU6-446P-201ENST00000362827 106 ntBASIC-3.97□□□□□ -3.04
CHMP4AQ9BY43 Y_RNA.722-201ENST00000517279 114 ntBASIC-4□□□□□ -3.05
CHMP4AQ9BY43 AL731768.1-201ENST00000603124 139 ntBASIC-4.01□□□□□ -3.05
CHMP4AQ9BY43 Y_RNA.397-201ENST00000383950 98 ntBASIC-4.03□□□□□ -3.05
CHMP4AQ9BY43 RNU6-822P-201ENST00000362707 106 ntBASIC-4.04□□□□□ -3.06
CHMP4AQ9BY43 RNU6-1169P-201ENST00000363537 103 ntBASIC-4.04□□□□□ -3.06
CHMP4AQ9BY43 Y_RNA.63-201ENST00000362841 102 ntBASIC-4.06□□□□□ -3.06
CHMP4AQ9BY43 RNU6-1121P-201ENST00000516802 109 ntBASIC-4.06□□□□□ -3.06
CHMP4AQ9BY43 MIR4317-201ENST00000637586 65 ntBASIC-4.07□□□□□ -3.06
CHMP4AQ9BY43 RNU6-1277P-201ENST00000364561 107 ntBASIC-4.08□□□□□ -3.06
CHMP4AQ9BY43 RNU6-1275P-201ENST00000391087 107 ntBASIC-4.08□□□□□ -3.06
CHMP4AQ9BY43 RNU6-230P-201ENST00000362457 104 ntBASIC-4.09□□□□□ -3.06
CHMP4AQ9BY43 Y_RNA.566-201ENST00000384735 101 ntBASIC-4.11□□□□□ -3.07
CHMP4AQ9BY43 MIR633-201ENST00000384821 98 ntBASIC-4.14□□□□□ -3.07
CHMP4AQ9BY43 SNORD113-4-201ENST00000364802 75 ntBASIC-4.15□□□□□ -3.07
CHMP4AQ9BY43 Y_RNA.382-201ENST00000365672 114 ntBASIC-4.15□□□□□ -3.07
CHMP4AQ9BY43 RNU4-33P-201ENST00000364316 85 ntBASIC-4.16□□□□□ -3.08
CHMP4AQ9BY43 RNY4P25-201ENST00000459254 96 ntBASIC-4.19□□□□□ -3.08
CHMP4AQ9BY43 MIR5693-201ENST00000577722 73 ntBASIC-4.19□□□□□ -3.08
CHMP4AQ9BY43 RNU6-829P-201ENST00000363700 112 ntBASIC-4.2□□□□□ -3.08
CHMP4AQ9BY43 AC139453.2-201ENST00000487255 133 ntBASIC-4.2□□□□□ -3.08
CHMP4AQ9BY43 AC125388.1-201ENST00000459631 156 ntBASIC-4.24□□□□□ -3.09
CHMP4AQ9BY43 MIRLET7A3-201ENST00000362116 74 ntBASIC-4.25□□□□□ -3.09
CHMP4AQ9BY43 MIR548AL-201ENST00000578416 97 ntBASIC-4.27□□□□□ -3.09
CHMP4AQ9BY43 RNU6-803P-201ENST00000516034 102 ntBASIC-4.28□□□□□ -3.09
CHMP4AQ9BY43 RNA5SP224-201ENST00000365069 126 ntBASIC-4.3□□□□□ -3.1
CHMP4AQ9BY43 Y_RNA.612-201ENST00000410717 95 ntBASIC-4.3□□□□□ -3.1
CHMP4AQ9BY43 MIR656-201ENST00000385224 78 ntBASIC-4.31□□□□□ -3.1
CHMP4AQ9BY43 AL359920.1-201ENST00000618332 176 ntBASIC-4.32□□□□□ -3.1
CHMP4AQ9BY43 Y_RNA.206-201ENST00000364136 102 ntBASIC-4.33□□□□□ -3.1
CHMP4AQ9BY43 Y_RNA.260-201ENST00000364628 101 ntBASIC-4.33□□□□□ -3.1
CHMP4AQ9BY43 MIR548H4-201ENST00000408689 111 ntBASIC-4.33□□□□□ -3.1
CHMP4AQ9BY43 SNORD115.2-201ENST00000391126 59 ntBASIC-4.34□□□□□ -3.1
CHMP4AQ9BY43 Y_RNA.830-201ENST00000628531 96 ntBASIC-4.37□□□□□ -3.11
CHMP4AQ9BY43 Y_RNA.79-201ENST00000362992 113 ntBASIC-4.39□□□□□ -3.11
CHMP4AQ9BY43 RNU6-1204P-201ENST00000363948 107 ntBASIC-4.39□□□□□ -3.11
CHMP4AQ9BY43 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-4.39□□□□□ -3.11
CHMP4AQ9BY43 SNORD45C-201ENST00000383893 79 ntBASIC-4.41□□□□□ -3.12
CHMP4AQ9BY43 AC079150.2-201ENST00000443733 78 ntBASIC-4.42□□□□□ -3.12
CHMP4AQ9BY43 SNORA72.7-201ENST00000516349 94 ntBASIC-4.42□□□□□ -3.12
CHMP4AQ9BY43 RNU6-836P-201ENST00000362920 107 ntBASIC-4.43□□□□□ -3.12
CHMP4AQ9BY43 RNU6-737P-201ENST00000365370 107 ntBASIC-4.43□□□□□ -3.12
CHMP4AQ9BY43 Y_RNA.134-201ENST00000363435 105 ntBASIC-4.44□□□□□ -3.12
CHMP4AQ9BY43 RNU6-854P-201ENST00000364036 107 ntBASIC-4.44□□□□□ -3.12
CHMP4AQ9BY43 Y_RNA.663-201ENST00000516043 101 ntBASIC-4.44□□□□□ -3.12
CHMP4AQ9BY43 RNU6-638P-201ENST00000516582 104 ntBASIC-4.45□□□□□ -3.12
CHMP4AQ9BY43 Y_RNA.658-201ENST00000515990 97 ntBASIC-4.46□□□□□ -3.12
CHMP4AQ9BY43 Y_RNA.266-201ENST00000364678 96 ntBASIC-4.47□□□□□ -3.13
CHMP4AQ9BY43 RNU6-1326P-201ENST00000391262 107 ntBASIC-4.47□□□□□ -3.13
CHMP4AQ9BY43 Y_RNA.652-201ENST00000458902 102 ntBASIC-4.48□□□□□ -3.13
CHMP4AQ9BY43 RNU6-1008P-201ENST00000384160 104 ntBASIC-4.49□□□□□ -3.13
CHMP4AQ9BY43 RNU6-1340P-201ENST00000384438 107 ntBASIC-4.49□□□□□ -3.13
CHMP4AQ9BY43 SNORD114-13-201ENST00000364377 74 ntBASIC-4.51□□□□□ -3.13
CHMP4AQ9BY43 Y_RNA.335-201ENST00000365299 96 ntBASIC-4.54□□□□□ -3.14
CHMP4AQ9BY43 Y_RNA.379-201ENST00000365653 102 ntBASIC-4.56□□□□□ -3.14
CHMP4AQ9BY43 RNU6-808P-201ENST00000391233 108 ntBASIC-4.56□□□□□ -3.14
CHMP4AQ9BY43 Y_RNA.345-201ENST00000365384 92 ntBASIC-4.57□□□□□ -3.14
CHMP4AQ9BY43 RNU6-838P-201ENST00000363399 108 ntBASIC-4.58□□□□□ -3.14
CHMP4AQ9BY43 RNU6-499P-201ENST00000365615 107 ntBASIC-4.59□□□□□ -3.14
CHMP4AQ9BY43 RNU6-1044P-201ENST00000384755 107 ntBASIC-4.59□□□□□ -3.14
CHMP4AQ9BY43 RNU6-1161P-201ENST00000516176 102 ntBASIC-4.62□□□□□ -3.15
CHMP4AQ9BY43 Y_RNA.137-201ENST00000363455 112 ntBASIC-4.7□□□□□ -3.16
CHMP4AQ9BY43 RNU6-753P-201ENST00000363926 107 ntBASIC-4.7□□□□□ -3.16
CHMP4AQ9BY43 RNU6-936P-201ENST00000384005 107 ntBASIC-4.71□□□□□ -3.16
CHMP4AQ9BY43 MIR124-1-201ENST00000385275 85 ntBASIC-4.71□□□□□ -3.16
CHMP4AQ9BY43 SNORD115-45-201ENST00000391078 81 ntBASIC-4.73□□□□□ -3.17
CHMP4AQ9BY43 RNU6-788P-201ENST00000390967 104 ntBASIC-4.75□□□□□ -3.17
CHMP4AQ9BY43 Y_RNA.511-201ENST00000384514 103 ntBASIC-4.76□□□□□ -3.17
CHMP4AQ9BY43 MIR545-201ENST00000385085 106 ntBASIC-4.81□□□□□ -3.18
CHMP4AQ9BY43 MIR548AH-201ENST00000637109 76 ntBASIC-4.83□□□□□ -3.18
CHMP4AQ9BY43 MIR509-1-201ENST00000385265 94 ntBASIC-4.84□□□□□ -3.18
CHMP4AQ9BY43 MIR509-2-201ENST00000390724 91 ntBASIC-4.84□□□□□ -3.18
CHMP4AQ9BY43 RNU6-986P-201ENST00000363133 102 ntBASIC-4.86□□□□□ -3.19
CHMP4AQ9BY43 RNU6-59P-201ENST00000384787 107 ntBASIC-4.87□□□□□ -3.19
CHMP4AQ9BY43 RNU6-930P-201ENST00000390938 100 ntBASIC-4.87□□□□□ -3.19
CHMP4AQ9BY43 RNU6-614P-201ENST00000384369 107 ntBASIC-4.91□□□□□ -3.2
CHMP4AQ9BY43 U6.59-201ENST00000615686 107 ntBASIC-4.91□□□□□ -3.2
CHMP4AQ9BY43 RNU6-422P-201ENST00000384632 107 ntBASIC-4.95□□□□□ -3.2
CHMP4AQ9BY43 RNU6-987P-201ENST00000384759 104 ntBASIC-4.99□□□□□ -3.21
CHMP4AQ9BY43 MIR548F3-201ENST00000408509 87 ntBASIC-5.01□□□□□ -3.21
CHMP4AQ9BY43 RNA5SP106-201ENST00000517274 100 ntBASIC-5.02□□□□□ -3.21
CHMP4AQ9BY43 RNU6-1043P-201ENST00000410355 99 ntBASIC-5.07□□□□□ -3.22
CHMP4AQ9BY43 Y_RNA.657-201ENST00000515983 102 ntBASIC-5.09□□□□□ -3.22
CHMP4AQ9BY43 RNY4P10-201ENST00000365571 96 ntBASIC-5.1□□□□□ -3.23
CHMP4AQ9BY43 Y_RNA.406-201ENST00000383984 100 ntBASIC-5.19□□□□□ -3.24
CHMP4AQ9BY43 RNU6-665P-201ENST00000384639 107 ntBASIC-5.25□□□□□ -3.25
CHMP4AQ9BY43 DLEU2_4.2-201ENST00000616613 58 ntBASIC-5.3□□□□□ -3.26
CHMP4AQ9BY43 MTND4LP19-201ENST00000403051 166 ntBASIC-5.37□□□□□ -3.27
CHMP4AQ9BY43 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-5.5□□□□□ -3.29
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms