Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.49□□□□□ -2.65
PCDHA1Q9Y5I3 RNU6-419P-201ENST00000517030 63 ntBASIC-1.49□□□□□ -2.65
PCDHA1Q9Y5I3 U4.2-201ENST00000618561 85 ntBASIC-1.49□□□□□ -2.65
PCDHA1Q9Y5I3 MIR664B-201ENST00000626756 61 ntBASIC-1.5□□□□□ -2.65
PCDHA1Q9Y5I3 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.51□□□□□ -2.65
PCDHA1Q9Y5I3 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.51□□□□□ -2.65
PCDHA1Q9Y5I3 RNU6-788P-201ENST00000390967 104 ntBASIC-1.51□□□□□ -2.65
PCDHA1Q9Y5I3 AL451105.1-201ENST00000450005 189 ntBASIC-1.51□□□□□ -2.65
PCDHA1Q9Y5I3 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.51□□□□□ -2.65
PCDHA1Q9Y5I3 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.51□□□□□ -2.65
PCDHA1Q9Y5I3 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.51□□□□□ -2.65
PCDHA1Q9Y5I3 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.52□□□□□ -2.65
PCDHA1Q9Y5I3 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.52□□□□□ -2.65
PCDHA1Q9Y5I3 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.53□□□□□ -2.65
PCDHA1Q9Y5I3 MIR633-201ENST00000384821 98 ntBASIC-1.53□□□□□ -2.65
PCDHA1Q9Y5I3 RNU6-829P-201ENST00000363700 112 ntBASIC-1.54□□□□□ -2.66
PCDHA1Q9Y5I3 AC120024.2-201ENST00000576526 175 ntBASIC-1.54□□□□□ -2.66
PCDHA1Q9Y5I3 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.54□□□□□ -2.66
PCDHA1Q9Y5I3 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.55□□□□□ -2.66
PCDHA1Q9Y5I3 RNU6-400P-201ENST00000391173 106 ntBASIC-1.55□□□□□ -2.66
PCDHA1Q9Y5I3 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.56□□□□□ -2.66
PCDHA1Q9Y5I3 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.57□□□□□ -2.66
PCDHA1Q9Y5I3 SNORD114-3-201ENST00000364969 75 ntBASIC-1.57□□□□□ -2.66
PCDHA1Q9Y5I3 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.57□□□□□ -2.66
PCDHA1Q9Y5I3 MIR548X-201ENST00000580069 75 ntBASIC-1.57□□□□□ -2.66
PCDHA1Q9Y5I3 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.58□□□□□ -2.66
PCDHA1Q9Y5I3 AC079150.2-201ENST00000443733 78 ntBASIC-1.58□□□□□ -2.66
PCDHA1Q9Y5I3 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.59□□□□□ -2.66
PCDHA1Q9Y5I3 RNU6-563P-201ENST00000364872 108 ntBASIC-1.59□□□□□ -2.66
PCDHA1Q9Y5I3 RNU6-499P-201ENST00000365615 107 ntBASIC-1.59□□□□□ -2.66
PCDHA1Q9Y5I3 RNU6-980P-201ENST00000516925 103 ntBASIC-1.59□□□□□ -2.66
PCDHA1Q9Y5I3 RNY3P8-201ENST00000411366 126 ntBASIC-1.6□□□□□ -2.67
PCDHA1Q9Y5I3 MIR3123-201ENST00000583417 75 ntBASIC-1.6□□□□□ -2.67
PCDHA1Q9Y5I3 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.61□□□□□ -2.67
PCDHA1Q9Y5I3 RNU6-695P-201ENST00000391157 104 ntBASIC-1.61□□□□□ -2.67
PCDHA1Q9Y5I3 SNORD113-4-201ENST00000364802 75 ntBASIC-1.62□□□□□ -2.67
PCDHA1Q9Y5I3 RNU4-88P-201ENST00000411220 86 ntBASIC-1.62□□□□□ -2.67
PCDHA1Q9Y5I3 RNU6-118P-201ENST00000516552 102 ntBASIC-1.62□□□□□ -2.67
PCDHA1Q9Y5I3 MIR548AM-201ENST00000584298 74 ntBASIC-1.62□□□□□ -2.67
PCDHA1Q9Y5I3 RNA5SP405-201ENST00000363059 114 ntBASIC-1.63□□□□□ -2.67
PCDHA1Q9Y5I3 RNY4P27-201ENST00000363341 96 ntBASIC-1.63□□□□□ -2.67
PCDHA1Q9Y5I3 RNU6-361P-201ENST00000364454 107 ntBASIC-1.64□□□□□ -2.67
PCDHA1Q9Y5I3 RNU6-530P-201ENST00000391180 107 ntBASIC-1.64□□□□□ -2.67
PCDHA1Q9Y5I3 MIR3139-201ENST00000579145 76 ntBASIC-1.64□□□□□ -2.67
PCDHA1Q9Y5I3 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.65□□□□□ -2.67
PCDHA1Q9Y5I3 RNU6-841P-201ENST00000383872 107 ntBASIC-1.65□□□□□ -2.67
PCDHA1Q9Y5I3 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.65□□□□□ -2.67
PCDHA1Q9Y5I3 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.65□□□□□ -2.67
PCDHA1Q9Y5I3 AC013734.1-201ENST00000619329 111 ntBASIC-1.66□□□□□ -2.68
PCDHA1Q9Y5I3 MIR496-201ENST00000385226 102 ntBASIC-1.67□□□□□ -2.68
PCDHA1Q9Y5I3 MIR548W-201ENST00000581970 74 ntBASIC-1.67□□□□□ -2.68
PCDHA1Q9Y5I3 SNORD60-201ENST00000383903 83 ntBASIC-1.68□□□□□ -2.68
PCDHA1Q9Y5I3 MIR1207-201ENST00000408249 87 ntBASIC-1.69□□□□□ -2.68
PCDHA1Q9Y5I3 MIR4723-201ENST00000585070 81 ntBASIC-1.69□□□□□ -2.68
PCDHA1Q9Y5I3 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.69□□□□□ -2.68
PCDHA1Q9Y5I3 SNORA17.4-201ENST00000391287 132 ntBASIC-1.7□□□□□ -2.68
PCDHA1Q9Y5I3 MIR202-201ENST00000362219 110 ntBASIC-1.71□□□□□ -2.68
PCDHA1Q9Y5I3 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.71□□□□□ -2.68
PCDHA1Q9Y5I3 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.73□□□□□ -2.69
PCDHA1Q9Y5I3 MIR548N-201ENST00000408742 75 ntBASIC-1.74□□□□□ -2.69
PCDHA1Q9Y5I3 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.75□□□□□ -2.69
PCDHA1Q9Y5I3 MT-TM-201ENST00000387377 68 ntBASIC-1.75□□□□□ -2.69
PCDHA1Q9Y5I3 snoU13.10-201ENST00000459301 103 ntBASIC-1.76□□□□□ -2.69
PCDHA1Q9Y5I3 RNU4-33P-201ENST00000364316 85 ntBASIC-1.77□□□□□ -2.69
PCDHA1Q9Y5I3 U6.97-201ENST00000636904 101 ntBASIC-1.77□□□□□ -2.69
PCDHA1Q9Y5I3 MIR4426-201ENST00000640330 63 ntBASIC-1.77□□□□□ -2.69
PCDHA1Q9Y5I3 SNORD18C-201ENST00000362704 69 ntBASIC-1.78□□□□□ -2.69
PCDHA1Q9Y5I3 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.78□□□□□ -2.69
PCDHA1Q9Y5I3 MIR4748-201ENST00000578076 82 ntBASIC-1.78□□□□□ -2.69
PCDHA1Q9Y5I3 RNU6-194P-201ENST00000363862 105 ntBASIC-1.79□□□□□ -2.7
PCDHA1Q9Y5I3 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.79□□□□□ -2.7
PCDHA1Q9Y5I3 RNU6-176P-201ENST00000517196 105 ntBASIC-1.8□□□□□ -2.7
PCDHA1Q9Y5I3 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.81□□□□□ -2.7
PCDHA1Q9Y5I3 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.81□□□□□ -2.7
PCDHA1Q9Y5I3 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.82□□□□□ -2.7
PCDHA1Q9Y5I3 RNU6-119P-201ENST00000364882 107 ntBASIC-1.83□□□□□ -2.7
PCDHA1Q9Y5I3 MIR581-201ENST00000384895 96 ntBASIC-1.83□□□□□ -2.7
PCDHA1Q9Y5I3 RNU6-742P-201ENST00000365289 107 ntBASIC-1.84□□□□□ -2.7
PCDHA1Q9Y5I3 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.84□□□□□ -2.7
PCDHA1Q9Y5I3 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.84□□□□□ -2.7
PCDHA1Q9Y5I3 RNU6-300P-201ENST00000459080 104 ntBASIC-1.85□□□□□ -2.71
PCDHA1Q9Y5I3 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.87□□□□□ -2.71
PCDHA1Q9Y5I3 RNA5SP93-201ENST00000362525 114 ntBASIC-1.9□□□□□ -2.71
PCDHA1Q9Y5I3 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.91□□□□□ -2.72
PCDHA1Q9Y5I3 RNU6-614P-201ENST00000384369 107 ntBASIC-1.91□□□□□ -2.72
PCDHA1Q9Y5I3 RNU6-141P-201ENST00000410499 105 ntBASIC-1.91□□□□□ -2.72
PCDHA1Q9Y5I3 U6.59-201ENST00000615686 107 ntBASIC-1.91□□□□□ -2.72
PCDHA1Q9Y5I3 FTX_4.1-201ENST00000616291 147 ntBASIC-1.93□□□□□ -2.72
PCDHA1Q9Y5I3 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.94□□□□□ -2.72
PCDHA1Q9Y5I3 MIR379-201ENST00000362218 67 ntBASIC-1.96□□□□□ -2.72
PCDHA1Q9Y5I3 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.96□□□□□ -2.72
PCDHA1Q9Y5I3 AC097484.2-201ENST00000509147 251 ntBASIC-1.96□□□□□ -2.72
PCDHA1Q9Y5I3 SNORD113-3-201ENST00000364830 72 ntBASIC-1.97□□□□□ -2.72
PCDHA1Q9Y5I3 RNU6-68P-201ENST00000516576 104 ntBASIC-1.97□□□□□ -2.72
PCDHA1Q9Y5I3 MIR548AL-201ENST00000578416 97 ntBASIC-1.97□□□□□ -2.72
PCDHA1Q9Y5I3 SNORD54-201ENST00000459159 67 ntBASIC-1.98□□□□□ -2.73
PCDHA1Q9Y5I3 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.99□□□□□ -2.73
PCDHA1Q9Y5I3 RNU6-936P-201ENST00000384005 107 ntBASIC-1.99□□□□□ -2.73
PCDHA1Q9Y5I3 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.99□□□□□ -2.73
PCDHA1Q9Y5I3 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.99□□□□□ -2.73
Retrieved 100 of 98,524 protein–RNA pairs in 298.8 ms