Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 Y_RNA.103-201ENST00000363171 102 ntBASIC-2.24□□□□□ -2.77
CPSF3Q9UKF6 MIR487B-201ENST00000385021 84 ntBASIC-2.24□□□□□ -2.77
CPSF3Q9UKF6 MIR466-201ENST00000580653 84 ntBASIC-2.24□□□□□ -2.77
CPSF3Q9UKF6 MIR3938-201ENST00000582157 103 ntBASIC-2.24□□□□□ -2.77
CPSF3Q9UKF6 Y_RNA.685-201ENST00000516532 108 ntBASIC-2.25□□□□□ -2.77
CPSF3Q9UKF6 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.26□□□□□ -2.77
CPSF3Q9UKF6 AC110620.1-201ENST00000416042 228 ntBASIC-2.27□□□□□ -2.77
CPSF3Q9UKF6 AC108019.1-201ENST00000512540 175 ntBASIC-2.27□□□□□ -2.77
CPSF3Q9UKF6 MIR202-201ENST00000362219 110 ntBASIC-2.28□□□□□ -2.77
CPSF3Q9UKF6 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.28□□□□□ -2.77
CPSF3Q9UKF6 Y_RNA.502-201ENST00000384478 113 ntBASIC-2.28□□□□□ -2.77
CPSF3Q9UKF6 RNU6-841P-201ENST00000383872 107 ntBASIC-2.3□□□□□ -2.78
CPSF3Q9UKF6 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-2.3□□□□□ -2.78
CPSF3Q9UKF6 Y_RNA.386-201ENST00000383913 105 ntBASIC-2.31□□□□□ -2.78
CPSF3Q9UKF6 Y_RNA.684-201ENST00000516510 99 ntBASIC-2.31□□□□□ -2.78
CPSF3Q9UKF6 SNORD60-201ENST00000383903 83 ntBASIC-2.32□□□□□ -2.78
CPSF3Q9UKF6 Y_RNA.475-201ENST00000384345 101 ntBASIC-2.32□□□□□ -2.78
CPSF3Q9UKF6 SNORD19B.1-201ENST00000630615 80 ntBASIC-2.32□□□□□ -2.78
CPSF3Q9UKF6 RNU6-530P-201ENST00000391180 107 ntBASIC-2.33□□□□□ -2.78
CPSF3Q9UKF6 AL451105.1-201ENST00000450005 189 ntBASIC-2.33□□□□□ -2.78
CPSF3Q9UKF6 MIR664B-201ENST00000626756 61 ntBASIC-2.33□□□□□ -2.78
CPSF3Q9UKF6 SNORD18C-201ENST00000362704 69 ntBASIC-2.34□□□□□ -2.78
CPSF3Q9UKF6 RNU6-361P-201ENST00000364454 107 ntBASIC-2.34□□□□□ -2.78
CPSF3Q9UKF6 RNU6-1296P-201ENST00000383879 107 ntBASIC-2.34□□□□□ -2.78
CPSF3Q9UKF6 MIR581-201ENST00000384895 96 ntBASIC-2.35□□□□□ -2.79
CPSF3Q9UKF6 RNU6-1275P-201ENST00000391087 107 ntBASIC-2.35□□□□□ -2.79
CPSF3Q9UKF6 MIR4756-201ENST00000577874 78 ntBASIC-2.35□□□□□ -2.79
CPSF3Q9UKF6 SNORD45.2-201ENST00000363552 72 ntBASIC-2.36□□□□□ -2.79
CPSF3Q9UKF6 SNORA17.4-201ENST00000391287 132 ntBASIC-2.36□□□□□ -2.79
CPSF3Q9UKF6 MIR548N-201ENST00000408742 75 ntBASIC-2.36□□□□□ -2.79
CPSF3Q9UKF6 RNU6-471P-201ENST00000383944 106 ntBASIC-2.37□□□□□ -2.79
CPSF3Q9UKF6 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-2.37□□□□□ -2.79
CPSF3Q9UKF6 MIR548AM-201ENST00000584298 74 ntBASIC-2.37□□□□□ -2.79
CPSF3Q9UKF6 AC114801.3-201ENST00000510231 177 ntBASIC-2.38□□□□□ -2.79
CPSF3Q9UKF6 Y_RNA.225-201ENST00000364326 97 ntBASIC-2.4□□□□□ -2.79
CPSF3Q9UKF6 RNU6-419P-201ENST00000517030 63 ntBASIC-2.4□□□□□ -2.79
CPSF3Q9UKF6 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.43□□□□□ -2.8
CPSF3Q9UKF6 RNU6-119P-201ENST00000364882 107 ntBASIC-2.44□□□□□ -2.8
CPSF3Q9UKF6 MIR4426-201ENST00000640330 63 ntBASIC-2.44□□□□□ -2.8
CPSF3Q9UKF6 RNU6-1079P-201ENST00000362861 110 ntBASIC-2.46□□□□□ -2.8
CPSF3Q9UKF6 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.46□□□□□ -2.8
CPSF3Q9UKF6 RNU6-1247P-201ENST00000516622 98 ntBASIC-2.46□□□□□ -2.8
CPSF3Q9UKF6 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.47□□□□□ -2.8
CPSF3Q9UKF6 snoU13.10-201ENST00000459301 103 ntBASIC-2.49□□□□□ -2.81
CPSF3Q9UKF6 RNU6-980P-201ENST00000516925 103 ntBASIC-2.49□□□□□ -2.81
CPSF3Q9UKF6 MIR548W-201ENST00000581970 74 ntBASIC-2.49□□□□□ -2.81
CPSF3Q9UKF6 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-2.51□□□□□ -2.81
CPSF3Q9UKF6 Y_RNA.228-201ENST00000364346 98 ntBASIC-2.52□□□□□ -2.81
CPSF3Q9UKF6 RNA5SP405-201ENST00000363059 114 ntBASIC-2.53□□□□□ -2.81
CPSF3Q9UKF6 MIR496-201ENST00000385226 102 ntBASIC-2.53□□□□□ -2.81
CPSF3Q9UKF6 RNU6-446P-201ENST00000362827 106 ntBASIC-2.54□□□□□ -2.82
CPSF3Q9UKF6 RNU6-300P-201ENST00000459080 104 ntBASIC-2.54□□□□□ -2.82
CPSF3Q9UKF6 RNU6-590P-201ENST00000365039 107 ntBASIC-2.55□□□□□ -2.82
CPSF3Q9UKF6 RNU4-88P-201ENST00000411220 86 ntBASIC-2.55□□□□□ -2.82
CPSF3Q9UKF6 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.56□□□□□ -2.82
CPSF3Q9UKF6 MIR548X-201ENST00000580069 75 ntBASIC-2.56□□□□□ -2.82
CPSF3Q9UKF6 RNU6-742P-201ENST00000365289 107 ntBASIC-2.57□□□□□ -2.82
CPSF3Q9UKF6 SNORA72.7-201ENST00000516349 94 ntBASIC-2.58□□□□□ -2.82
CPSF3Q9UKF6 RNU6-118P-201ENST00000516552 102 ntBASIC-2.58□□□□□ -2.82
CPSF3Q9UKF6 RNU6-176P-201ENST00000517196 105 ntBASIC-2.58□□□□□ -2.82
CPSF3Q9UKF6 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.59□□□□□ -2.82
CPSF3Q9UKF6 RNU6-68P-201ENST00000516576 104 ntBASIC-2.59□□□□□ -2.82
CPSF3Q9UKF6 RNU6-1312P-201ENST00000362425 108 ntBASIC-2.6□□□□□ -2.83
CPSF3Q9UKF6 RNU6-194P-201ENST00000363862 105 ntBASIC-2.6□□□□□ -2.83
CPSF3Q9UKF6 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-2.6□□□□□ -2.83
CPSF3Q9UKF6 MIR379-201ENST00000362218 67 ntBASIC-2.61□□□□□ -2.83
CPSF3Q9UKF6 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.61□□□□□ -2.83
CPSF3Q9UKF6 MIR3139-201ENST00000579145 76 ntBASIC-2.61□□□□□ -2.83
CPSF3Q9UKF6 Y_RNA.129-201ENST00000363392 110 ntBASIC-2.63□□□□□ -2.83
CPSF3Q9UKF6 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.63□□□□□ -2.83
CPSF3Q9UKF6 Y_RNA.349-201ENST00000365406 102 ntBASIC-2.63□□□□□ -2.83
CPSF3Q9UKF6 RNU6-638P-201ENST00000516582 104 ntBASIC-2.66□□□□□ -2.84
CPSF3Q9UKF6 Y_RNA.722-201ENST00000517279 114 ntBASIC-2.66□□□□□ -2.84
CPSF3Q9UKF6 MIR548AJ2-201ENST00000408539 92 ntBASIC-2.68□□□□□ -2.84
CPSF3Q9UKF6 SNORD113-4-201ENST00000364802 75 ntBASIC-2.69□□□□□ -2.84
CPSF3Q9UKF6 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.69□□□□□ -2.84
CPSF3Q9UKF6 RNU6-912P-201ENST00000363800 104 ntBASIC-2.7□□□□□ -2.84
CPSF3Q9UKF6 AC097484.2-201ENST00000509147 251 ntBASIC-2.7□□□□□ -2.84
CPSF3Q9UKF6 MIR633-201ENST00000384821 98 ntBASIC-2.71□□□□□ -2.84
CPSF3Q9UKF6 MT-TM-201ENST00000387377 68 ntBASIC-2.71□□□□□ -2.84
CPSF3Q9UKF6 RNU6-1324P-201ENST00000384222 107 ntBASIC-2.72□□□□□ -2.84
CPSF3Q9UKF6 RNU6-829P-201ENST00000363700 112 ntBASIC-2.73□□□□□ -2.85
CPSF3Q9UKF6 Y_RNA.320-201ENST00000365144 102 ntBASIC-2.73□□□□□ -2.85
CPSF3Q9UKF6 MIR4748-201ENST00000578076 82 ntBASIC-2.73□□□□□ -2.85
CPSF3Q9UKF6 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-2.73□□□□□ -2.85
CPSF3Q9UKF6 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.74□□□□□ -2.85
CPSF3Q9UKF6 SNORD54-201ENST00000459159 67 ntBASIC-2.75□□□□□ -2.85
CPSF3Q9UKF6 Y_RNA.647-201ENST00000459194 112 ntBASIC-2.76□□□□□ -2.85
CPSF3Q9UKF6 Y_RNA.640-201ENST00000459296 112 ntBASIC-2.76□□□□□ -2.85
CPSF3Q9UKF6 Y_RNA.803-201ENST00000614432 112 ntBASIC-2.76□□□□□ -2.85
CPSF3Q9UKF6 Y_RNA.815-201ENST00000616655 112 ntBASIC-2.76□□□□□ -2.85
CPSF3Q9UKF6 Y_RNA.795-201ENST00000619475 112 ntBASIC-2.76□□□□□ -2.85
CPSF3Q9UKF6 Y_RNA.827-201ENST00000638104 112 ntBASIC-2.76□□□□□ -2.85
CPSF3Q9UKF6 AC125388.1-201ENST00000459631 156 ntBASIC-2.77□□□□□ -2.85
CPSF3Q9UKF6 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.78□□□□□ -2.85
CPSF3Q9UKF6 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-2.78□□□□□ -2.85
CPSF3Q9UKF6 SNORD113-3-201ENST00000364830 72 ntBASIC-2.79□□□□□ -2.86
CPSF3Q9UKF6 RNY4P7-201ENST00000364600 96 ntBASIC-2.8□□□□□ -2.86
CPSF3Q9UKF6 FTX_4.1-201ENST00000616291 147 ntBASIC-2.8□□□□□ -2.86
CPSF3Q9UKF6 RNU4-33P-201ENST00000364316 85 ntBASIC-2.82□□□□□ -2.86
Retrieved 100 of 98,524 protein–RNA pairs in 198.7 ms