Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RNU6-122P-201ENST00000516818 107 ntBASIC-2.68□□□□□ -2.84
VPS28Q9UK41 RNU6-1306P-201ENST00000365219 99 ntBASIC-2.69□□□□□ -2.84
VPS28Q9UK41 RNY4P29-201ENST00000410801 97 ntBASIC-2.69□□□□□ -2.84
VPS28Q9UK41 MIR3123-201ENST00000583417 75 ntBASIC-2.69□□□□□ -2.84
VPS28Q9UK41 RNU6-810P-201ENST00000364001 107 ntBASIC-2.7□□□□□ -2.84
VPS28Q9UK41 SNORD116.2-201ENST00000391251 93 ntBASIC-2.7□□□□□ -2.84
VPS28Q9UK41 RNU6-279P-201ENST00000391297 101 ntBASIC-2.7□□□□□ -2.84
VPS28Q9UK41 RNU6-573P-201ENST00000383938 106 ntBASIC-2.72□□□□□ -2.84
VPS28Q9UK41 MIR1255A-201ENST00000408338 113 ntBASIC-2.72□□□□□ -2.84
VPS28Q9UK41 AC005520.4-201ENST00000604337 90 ntBASIC-2.72□□□□□ -2.84
VPS28Q9UK41 RNY4P7-201ENST00000364600 96 ntBASIC-2.73□□□□□ -2.85
VPS28Q9UK41 RNU6-974P-201ENST00000384099 108 ntBASIC-2.74□□□□□ -2.85
VPS28Q9UK41 RNU6-649P-201ENST00000384463 107 ntBASIC-2.74□□□□□ -2.85
VPS28Q9UK41 RNY3P8-201ENST00000411366 126 ntBASIC-2.75□□□□□ -2.85
VPS28Q9UK41 AC013734.1-201ENST00000619329 111 ntBASIC-2.75□□□□□ -2.85
VPS28Q9UK41 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.76□□□□□ -2.85
VPS28Q9UK41 SNORA40B-201ENST00000385573 128 ntBASIC-2.76□□□□□ -2.85
VPS28Q9UK41 RNU7-119P-201ENST00000459279 63 ntBASIC-2.76□□□□□ -2.85
VPS28Q9UK41 RNU6-539P-201ENST00000516665 103 ntBASIC-2.76□□□□□ -2.85
VPS28Q9UK41 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.77□□□□□ -2.85
VPS28Q9UK41 Y_RNA.388-201ENST00000383919 113 ntBASIC-2.78□□□□□ -2.85
VPS28Q9UK41 RNU6-520P-201ENST00000384717 104 ntBASIC-2.78□□□□□ -2.85
VPS28Q9UK41 RNU6-1206P-201ENST00000516339 103 ntBASIC-2.78□□□□□ -2.85
VPS28Q9UK41 MIR466-201ENST00000580653 84 ntBASIC-2.78□□□□□ -2.85
VPS28Q9UK41 U6.111-201ENST00000636093 83 ntBASIC-2.78□□□□□ -2.85
VPS28Q9UK41 AC103706.3-201ENST00000636297 85 ntBASIC-2.78□□□□□ -2.85
VPS28Q9UK41 RNU6-1255P-201ENST00000363434 112 ntBASIC-2.79□□□□□ -2.86
VPS28Q9UK41 MIR4511-201ENST00000582784 87 ntBASIC-2.79□□□□□ -2.86
VPS28Q9UK41 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.8□□□□□ -2.86
VPS28Q9UK41 MIR4748-201ENST00000578076 82 ntBASIC-2.8□□□□□ -2.86
VPS28Q9UK41 MIR4679-1-201ENST00000637619 75 ntBASIC-2.8□□□□□ -2.86
VPS28Q9UK41 U6.97-201ENST00000636904 101 ntBASIC-2.81□□□□□ -2.86
VPS28Q9UK41 RNU6-940P-201ENST00000363433 104 ntBASIC-2.82□□□□□ -2.86
VPS28Q9UK41 SNORD78.1-201ENST00000390866 65 ntBASIC-2.84□□□□□ -2.86
VPS28Q9UK41 Y_RNA.43-201ENST00000362670 111 ntBASIC-2.86□□□□□ -2.87
VPS28Q9UK41 Y_RNA.204-201ENST00000364112 102 ntBASIC-2.86□□□□□ -2.87
VPS28Q9UK41 SNORD60-201ENST00000383903 83 ntBASIC-2.87□□□□□ -2.87
VPS28Q9UK41 SNORA40.16-201ENST00000517238 121 ntBASIC-2.87□□□□□ -2.87
VPS28Q9UK41 SNORD19B.1-201ENST00000630615 80 ntBASIC-2.87□□□□□ -2.87
VPS28Q9UK41 SNORD18C-201ENST00000362704 69 ntBASIC-2.89□□□□□ -2.87
VPS28Q9UK41 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-2.89□□□□□ -2.87
VPS28Q9UK41 MIR1302-4-201ENST00000408701 150 ntBASIC-2.89□□□□□ -2.87
VPS28Q9UK41 SNORD45.2-201ENST00000363552 72 ntBASIC-2.9□□□□□ -2.87
VPS28Q9UK41 MIR202-201ENST00000362219 110 ntBASIC-2.92□□□□□ -2.88
VPS28Q9UK41 RNU6-230P-201ENST00000362457 104 ntBASIC-2.92□□□□□ -2.88
VPS28Q9UK41 RNY4-201ENST00000516507 96 ntBASIC-2.92□□□□□ -2.88
VPS28Q9UK41 RNA5SP225-201ENST00000410874 135 ntBASIC-2.93□□□□□ -2.88
VPS28Q9UK41 Y_RNA.397-201ENST00000383950 98 ntBASIC-2.94□□□□□ -2.88
VPS28Q9UK41 RNU6-800P-201ENST00000384473 103 ntBASIC-2.95□□□□□ -2.88
VPS28Q9UK41 MIR3938-201ENST00000582157 103 ntBASIC-2.95□□□□□ -2.88
VPS28Q9UK41 MIR548W-201ENST00000581970 74 ntBASIC-2.96□□□□□ -2.88
VPS28Q9UK41 MIR4662A-201ENST00000637499 67 ntBASIC-2.96□□□□□ -2.88
VPS28Q9UK41 RNU6-1296P-201ENST00000383879 107 ntBASIC-2.97□□□□□ -2.88
VPS28Q9UK41 SNORA17.4-201ENST00000391287 132 ntBASIC-2.97□□□□□ -2.88
VPS28Q9UK41 RNU6-361P-201ENST00000364454 107 ntBASIC-2.98□□□□□ -2.89
VPS28Q9UK41 Y_RNA.565-201ENST00000384719 101 ntBASIC-2.98□□□□□ -2.89
VPS28Q9UK41 AL451105.1-201ENST00000450005 189 ntBASIC-2.98□□□□□ -2.89
VPS28Q9UK41 Y_RNA.186-201ENST00000363899 92 ntBASIC-2.99□□□□□ -2.89
VPS28Q9UK41 RNU6-530P-201ENST00000391180 107 ntBASIC-2.99□□□□□ -2.89
VPS28Q9UK41 MIR548N-201ENST00000408742 75 ntBASIC-2.99□□□□□ -2.89
VPS28Q9UK41 FTX_4.1-201ENST00000616291 147 ntBASIC-2.99□□□□□ -2.89
VPS28Q9UK41 Y_RNA.513-201ENST00000384522 100 ntBASIC-3.01□□□□□ -2.89
VPS28Q9UK41 snoU13.10-201ENST00000459301 103 ntBASIC-3.01□□□□□ -2.89
VPS28Q9UK41 RNU6-776P-201ENST00000364403 104 ntBASIC-3.02□□□□□ -2.89
VPS28Q9UK41 RNU6-1022P-201ENST00000365049 104 ntBASIC-3.02□□□□□ -2.89
VPS28Q9UK41 Y_RNA.501-201ENST00000384467 103 ntBASIC-3.04□□□□□ -2.9
VPS28Q9UK41 RNY4P9-201ENST00000363194 97 ntBASIC-3.06□□□□□ -2.9
VPS28Q9UK41 AC110620.1-201ENST00000416042 228 ntBASIC-3.06□□□□□ -2.9
VPS28Q9UK41 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-3.06□□□□□ -2.9
VPS28Q9UK41 RNU6-1079P-201ENST00000362861 110 ntBASIC-3.07□□□□□ -2.9
VPS28Q9UK41 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-3.07□□□□□ -2.9
VPS28Q9UK41 MIR581-201ENST00000384895 96 ntBASIC-3.08□□□□□ -2.9
VPS28Q9UK41 MIR4426-201ENST00000640330 63 ntBASIC-3.1□□□□□ -2.91
VPS28Q9UK41 RNU6-419P-201ENST00000517030 63 ntBASIC-3.11□□□□□ -2.91
VPS28Q9UK41 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-3.11□□□□□ -2.91
VPS28Q9UK41 RNU6-141P-201ENST00000410499 105 ntBASIC-3.13□□□□□ -2.91
VPS28Q9UK41 Y_RNA.685-201ENST00000516532 108 ntBASIC-3.14□□□□□ -2.91
VPS28Q9UK41 RNU6-176P-201ENST00000517196 105 ntBASIC-3.16□□□□□ -2.92
VPS28Q9UK41 SNX3P1Y-201ENST00000615757 176 ntBASIC-3.16□□□□□ -2.92
VPS28Q9UK41 AC097484.2-201ENST00000509147 251 ntBASIC-3.17□□□□□ -2.92
VPS28Q9UK41 RNU6-803P-201ENST00000516034 102 ntBASIC-3.17□□□□□ -2.92
VPS28Q9UK41 RNU6-471P-201ENST00000383944 106 ntBASIC-3.18□□□□□ -2.92
VPS28Q9UK41 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-3.18□□□□□ -2.92
VPS28Q9UK41 RNU6-300P-201ENST00000459080 104 ntBASIC-3.19□□□□□ -2.92
VPS28Q9UK41 MIR379-201ENST00000362218 67 ntBASIC-3.2□□□□□ -2.92
VPS28Q9UK41 Y_RNA.519-201ENST00000384553 102 ntBASIC-3.2□□□□□ -2.92
VPS28Q9UK41 Y_RNA.386-201ENST00000383913 105 ntBASIC-3.21□□□□□ -2.92
VPS28Q9UK41 Y_RNA.647-201ENST00000459194 112 ntBASIC-3.21□□□□□ -2.92
VPS28Q9UK41 Y_RNA.640-201ENST00000459296 112 ntBASIC-3.21□□□□□ -2.92
VPS28Q9UK41 Y_RNA.803-201ENST00000614432 112 ntBASIC-3.21□□□□□ -2.92
VPS28Q9UK41 Y_RNA.815-201ENST00000616655 112 ntBASIC-3.21□□□□□ -2.92
VPS28Q9UK41 Y_RNA.795-201ENST00000619475 112 ntBASIC-3.21□□□□□ -2.92
VPS28Q9UK41 Y_RNA.827-201ENST00000638104 112 ntBASIC-3.21□□□□□ -2.92
VPS28Q9UK41 RNU6-590P-201ENST00000365039 107 ntBASIC-3.23□□□□□ -2.93
VPS28Q9UK41 Y_RNA.129-201ENST00000363392 110 ntBASIC-3.24□□□□□ -2.93
VPS28Q9UK41 AC114801.3-201ENST00000510231 177 ntBASIC-3.24□□□□□ -2.93
VPS28Q9UK41 Y_RNA.658-201ENST00000515990 97 ntBASIC-3.24□□□□□ -2.93
VPS28Q9UK41 RNU6-1121P-201ENST00000516802 109 ntBASIC-3.25□□□□□ -2.93
VPS28Q9UK41 MIRLET7A2-201ENST00000362105 72 ntBASIC-3.27□□□□□ -2.93
VPS28Q9UK41 Y_RNA.349-201ENST00000365406 102 ntBASIC-3.28□□□□□ -2.93
Retrieved 100 of 98,524 protein–RNA pairs in 165.5 ms