Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RNY3P8-201ENST00000411366 126 ntBASIC-1.73□□□□□ -2.69
LIME1Q9H400 AC110620.1-201ENST00000416042 228 ntBASIC-1.73□□□□□ -2.69
LIME1Q9H400 RNU6-520P-201ENST00000384717 104 ntBASIC-1.74□□□□□ -2.69
LIME1Q9H400 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.74□□□□□ -2.69
LIME1Q9H400 MIR3938-201ENST00000582157 103 ntBASIC-1.74□□□□□ -2.69
LIME1Q9H400 AC013734.1-201ENST00000619329 111 ntBASIC-1.74□□□□□ -2.69
LIME1Q9H400 RNU6-983P-201ENST00000516004 103 ntBASIC-1.77□□□□□ -2.69
LIME1Q9H400 MIR466-201ENST00000580653 84 ntBASIC-1.77□□□□□ -2.69
LIME1Q9H400 RNU6-841P-201ENST00000383872 107 ntBASIC-1.79□□□□□ -2.7
LIME1Q9H400 RNU6-471P-201ENST00000383944 106 ntBASIC-1.79□□□□□ -2.7
LIME1Q9H400 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.79□□□□□ -2.7
LIME1Q9H400 MIR3123-201ENST00000583417 75 ntBASIC-1.79□□□□□ -2.7
LIME1Q9H400 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.8□□□□□ -2.7
LIME1Q9H400 AC114801.3-201ENST00000510231 177 ntBASIC-1.8□□□□□ -2.7
LIME1Q9H400 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.81□□□□□ -2.7
LIME1Q9H400 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.81□□□□□ -2.7
LIME1Q9H400 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.81□□□□□ -2.7
LIME1Q9H400 AL451105.1-201ENST00000450005 189 ntBASIC-1.81□□□□□ -2.7
LIME1Q9H400 AC108019.1-201ENST00000512540 175 ntBASIC-1.81□□□□□ -2.7
LIME1Q9H400 RNU6-361P-201ENST00000364454 107 ntBASIC-1.83□□□□□ -2.7
LIME1Q9H400 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.83□□□□□ -2.7
LIME1Q9H400 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.83□□□□□ -2.7
LIME1Q9H400 MIR202-201ENST00000362219 110 ntBASIC-1.85□□□□□ -2.71
LIME1Q9H400 SNORD18C-201ENST00000362704 69 ntBASIC-1.85□□□□□ -2.71
LIME1Q9H400 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.85□□□□□ -2.71
LIME1Q9H400 MIR548N-201ENST00000408742 75 ntBASIC-1.85□□□□□ -2.71
LIME1Q9H400 SNORD45.2-201ENST00000363552 72 ntBASIC-1.86□□□□□ -2.71
LIME1Q9H400 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.86□□□□□ -2.71
LIME1Q9H400 SNORD60-201ENST00000383903 83 ntBASIC-1.86□□□□□ -2.71
LIME1Q9H400 MIR4756-201ENST00000577874 78 ntBASIC-1.86□□□□□ -2.71
LIME1Q9H400 MIR548AM-201ENST00000584298 74 ntBASIC-1.86□□□□□ -2.71
LIME1Q9H400 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.86□□□□□ -2.71
LIME1Q9H400 U6.97-201ENST00000636904 101 ntBASIC-1.86□□□□□ -2.71
LIME1Q9H400 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.87□□□□□ -2.71
LIME1Q9H400 RNU6-419P-201ENST00000517030 63 ntBASIC-1.87□□□□□ -2.71
LIME1Q9H400 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.88□□□□□ -2.71
LIME1Q9H400 SNORA72.7-201ENST00000516349 94 ntBASIC-1.88□□□□□ -2.71
LIME1Q9H400 SNORA17.4-201ENST00000391287 132 ntBASIC-1.89□□□□□ -2.71
LIME1Q9H400 MIR664B-201ENST00000626756 61 ntBASIC-1.89□□□□□ -2.71
LIME1Q9H400 MIR581-201ENST00000384895 96 ntBASIC-1.9□□□□□ -2.71
LIME1Q9H400 MIR496-201ENST00000385226 102 ntBASIC-1.9□□□□□ -2.71
LIME1Q9H400 RNU6-530P-201ENST00000391180 107 ntBASIC-1.9□□□□□ -2.71
LIME1Q9H400 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.94□□□□□ -2.72
LIME1Q9H400 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.94□□□□□ -2.72
LIME1Q9H400 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.94□□□□□ -2.72
LIME1Q9H400 MIR4426-201ENST00000640330 63 ntBASIC-1.94□□□□□ -2.72
LIME1Q9H400 SNORD54-201ENST00000459159 67 ntBASIC-1.97□□□□□ -2.72
LIME1Q9H400 RNU6-638P-201ENST00000516582 104 ntBASIC-1.97□□□□□ -2.72
LIME1Q9H400 RNU6-446P-201ENST00000362827 106 ntBASIC-1.99□□□□□ -2.73
LIME1Q9H400 RNU6-980P-201ENST00000516925 103 ntBASIC-1.99□□□□□ -2.73
LIME1Q9H400 MIR548X-201ENST00000580069 75 ntBASIC-1.99□□□□□ -2.73
LIME1Q9H400 Y_RNA.225-201ENST00000364326 97 ntBASIC-2□□□□□ -2.73
LIME1Q9H400 Y_RNA.284-201ENST00000364806 102 ntBASIC-2□□□□□ -2.73
LIME1Q9H400 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2□□□□□ -2.73
LIME1Q9H400 Y_RNA.722-201ENST00000517279 114 ntBASIC-2.01□□□□□ -2.73
LIME1Q9H400 RNU6-176P-201ENST00000517196 105 ntBASIC-2.02□□□□□ -2.73
LIME1Q9H400 MIR548W-201ENST00000581970 74 ntBASIC-2.02□□□□□ -2.73
LIME1Q9H400 RNU6-590P-201ENST00000365039 107 ntBASIC-2.03□□□□□ -2.73
LIME1Q9H400 RNU4-88P-201ENST00000411220 86 ntBASIC-2.03□□□□□ -2.73
LIME1Q9H400 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.04□□□□□ -2.74
LIME1Q9H400 RNU6-300P-201ENST00000459080 104 ntBASIC-2.04□□□□□ -2.74
LIME1Q9H400 snoU13.10-201ENST00000459301 103 ntBASIC-2.04□□□□□ -2.74
LIME1Q9H400 RNU6-68P-201ENST00000516576 104 ntBASIC-2.04□□□□□ -2.74
LIME1Q9H400 MIR379-201ENST00000362218 67 ntBASIC-2.05□□□□□ -2.74
LIME1Q9H400 RNA5SP405-201ENST00000363059 114 ntBASIC-2.06□□□□□ -2.74
LIME1Q9H400 Y_RNA.129-201ENST00000363392 110 ntBASIC-2.06□□□□□ -2.74
LIME1Q9H400 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.06□□□□□ -2.74
LIME1Q9H400 RNY4-201ENST00000516507 96 ntBASIC-2.06□□□□□ -2.74
LIME1Q9H400 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-2.06□□□□□ -2.74
LIME1Q9H400 RNU6-742P-201ENST00000365289 107 ntBASIC-2.07□□□□□ -2.74
LIME1Q9H400 MIR4748-201ENST00000578076 82 ntBASIC-2.08□□□□□ -2.74
LIME1Q9H400 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-2.08□□□□□ -2.74
LIME1Q9H400 RNU6-1312P-201ENST00000362425 108 ntBASIC-2.09□□□□□ -2.74
LIME1Q9H400 Y_RNA.349-201ENST00000365406 102 ntBASIC-2.09□□□□□ -2.74
LIME1Q9H400 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.09□□□□□ -2.74
LIME1Q9H400 RNU6-118P-201ENST00000516552 102 ntBASIC-2.09□□□□□ -2.74
LIME1Q9H400 Y_RNA.53-201ENST00000362765 102 ntBASIC-2.1□□□□□ -2.75
LIME1Q9H400 RNU6-829P-201ENST00000363700 112 ntBASIC-2.12□□□□□ -2.75
LIME1Q9H400 RNU6-194P-201ENST00000363862 105 ntBASIC-2.12□□□□□ -2.75
LIME1Q9H400 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.12□□□□□ -2.75
LIME1Q9H400 SNORD113-4-201ENST00000364802 75 ntBASIC-2.12□□□□□ -2.75
LIME1Q9H400 MIR3139-201ENST00000579145 76 ntBASIC-2.13□□□□□ -2.75
LIME1Q9H400 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.14□□□□□ -2.75
LIME1Q9H400 MIR633-201ENST00000384821 98 ntBASIC-2.15□□□□□ -2.75
LIME1Q9H400 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-2.15□□□□□ -2.75
LIME1Q9H400 MIR548AJ2-201ENST00000408539 92 ntBASIC-2.15□□□□□ -2.75
LIME1Q9H400 AC125388.1-201ENST00000459631 156 ntBASIC-2.15□□□□□ -2.75
LIME1Q9H400 AC097484.2-201ENST00000509147 251 ntBASIC-2.17□□□□□ -2.76
LIME1Q9H400 AC139453.2-201ENST00000487255 133 ntBASIC-2.18□□□□□ -2.76
LIME1Q9H400 FTX_4.1-201ENST00000616291 147 ntBASIC-2.18□□□□□ -2.76
LIME1Q9H400 RNA5SP93-201ENST00000362525 114 ntBASIC-2.21□□□□□ -2.76
LIME1Q9H400 Y_RNA.320-201ENST00000365144 102 ntBASIC-2.21□□□□□ -2.76
LIME1Q9H400 MT-TM-201ENST00000387377 68 ntBASIC-2.21□□□□□ -2.76
LIME1Q9H400 AC079150.2-201ENST00000443733 78 ntBASIC-2.21□□□□□ -2.76
LIME1Q9H400 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-2.21□□□□□ -2.76
LIME1Q9H400 RNU4-33P-201ENST00000364316 85 ntBASIC-2.22□□□□□ -2.76
LIME1Q9H400 RNU6-1324P-201ENST00000384222 107 ntBASIC-2.22□□□□□ -2.76
LIME1Q9H400 RNU6-912P-201ENST00000363800 104 ntBASIC-2.23□□□□□ -2.77
LIME1Q9H400 Y_RNA.647-201ENST00000459194 112 ntBASIC-2.25□□□□□ -2.77
LIME1Q9H400 Y_RNA.640-201ENST00000459296 112 ntBASIC-2.25□□□□□ -2.77
Retrieved 100 of 98,524 protein–RNA pairs in 190 ms