Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 Y_RNA.211-201ENST00000364164 101 ntBASIC-3.18□□□□□ -2.92
CHMP4AQ9BY43 SNORD73B-201ENST00000364394 72 ntBASIC-3.18□□□□□ -2.92
CHMP4AQ9BY43 RNU6-1124P-201ENST00000384169 107 ntBASIC-3.18□□□□□ -2.92
CHMP4AQ9BY43 RNA5SP170-201ENST00000517150 101 ntBASIC-3.18□□□□□ -2.92
CHMP4AQ9BY43 SNORD18C-201ENST00000362704 69 ntBASIC-3.19□□□□□ -2.92
CHMP4AQ9BY43 SNORA40B-201ENST00000385573 128 ntBASIC-3.19□□□□□ -2.92
CHMP4AQ9BY43 RNA5SP405-201ENST00000363059 114 ntBASIC-3.2□□□□□ -2.92
CHMP4AQ9BY43 RNU6-1206P-201ENST00000516339 103 ntBASIC-3.2□□□□□ -2.92
CHMP4AQ9BY43 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-3.2□□□□□ -2.92
CHMP4AQ9BY43 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-3.2□□□□□ -2.92
CHMP4AQ9BY43 RNU6-573P-201ENST00000383938 106 ntBASIC-3.21□□□□□ -2.92
CHMP4AQ9BY43 Y_RNA.421-201ENST00000384052 101 ntBASIC-3.21□□□□□ -2.92
CHMP4AQ9BY43 RNU6-649P-201ENST00000384463 107 ntBASIC-3.21□□□□□ -2.92
CHMP4AQ9BY43 RNU7-119P-201ENST00000459279 63 ntBASIC-3.22□□□□□ -2.92
CHMP4AQ9BY43 RNU6-857P-201ENST00000515893 110 ntBASIC-3.22□□□□□ -2.92
CHMP4AQ9BY43 MIR1255A-201ENST00000408338 113 ntBASIC-3.23□□□□□ -2.93
CHMP4AQ9BY43 MIR202-201ENST00000362219 110 ntBASIC-3.24□□□□□ -2.93
CHMP4AQ9BY43 SNORD60-201ENST00000383903 83 ntBASIC-3.24□□□□□ -2.93
CHMP4AQ9BY43 MIR581-201ENST00000384895 96 ntBASIC-3.25□□□□□ -2.93
CHMP4AQ9BY43 SNORA26.2-201ENST00000390922 122 ntBASIC-3.25□□□□□ -2.93
CHMP4AQ9BY43 RNU6-194P-201ENST00000363862 105 ntBASIC-3.26□□□□□ -2.93
CHMP4AQ9BY43 Y_RNA.53-201ENST00000362765 102 ntBASIC-3.27□□□□□ -2.93
CHMP4AQ9BY43 U6.111-201ENST00000636093 83 ntBASIC-3.27□□□□□ -2.93
CHMP4AQ9BY43 RNY4P29-201ENST00000410801 97 ntBASIC-3.28□□□□□ -2.93
CHMP4AQ9BY43 SNORA40.16-201ENST00000517238 121 ntBASIC-3.29□□□□□ -2.94
CHMP4AQ9BY43 MIR4511-201ENST00000582784 87 ntBASIC-3.29□□□□□ -2.94
CHMP4AQ9BY43 RNU6-1298P-201ENST00000362456 101 ntBASIC-3.3□□□□□ -2.94
CHMP4AQ9BY43 Y_RNA.564-201ENST00000384708 106 ntBASIC-3.3□□□□□ -2.94
CHMP4AQ9BY43 RNU6-279P-201ENST00000391297 101 ntBASIC-3.3□□□□□ -2.94
CHMP4AQ9BY43 MIR548N-201ENST00000408742 75 ntBASIC-3.3□□□□□ -2.94
CHMP4AQ9BY43 MIR4748-201ENST00000578076 82 ntBASIC-3.3□□□□□ -2.94
CHMP4AQ9BY43 MIR466-201ENST00000580653 84 ntBASIC-3.3□□□□□ -2.94
CHMP4AQ9BY43 RNU6-940P-201ENST00000363433 104 ntBASIC-3.31□□□□□ -2.94
CHMP4AQ9BY43 RNU6-539P-201ENST00000516665 103 ntBASIC-3.31□□□□□ -2.94
CHMP4AQ9BY43 AC103706.3-201ENST00000636297 85 ntBASIC-3.31□□□□□ -2.94
CHMP4AQ9BY43 RNU6-1296P-201ENST00000383879 107 ntBASIC-3.32□□□□□ -2.94
CHMP4AQ9BY43 SNORD45.2-201ENST00000363552 72 ntBASIC-3.33□□□□□ -2.94
CHMP4AQ9BY43 RNU6-530P-201ENST00000391180 107 ntBASIC-3.33□□□□□ -2.94
CHMP4AQ9BY43 Y_RNA.388-201ENST00000383919 113 ntBASIC-3.34□□□□□ -2.94
CHMP4AQ9BY43 AC097484.2-201ENST00000509147 251 ntBASIC-3.34□□□□□ -2.94
CHMP4AQ9BY43 FTX_4.1-201ENST00000616291 147 ntBASIC-3.34□□□□□ -2.94
CHMP4AQ9BY43 SNORA17.4-201ENST00000391287 132 ntBASIC-3.35□□□□□ -2.95
CHMP4AQ9BY43 MIR4679-1-201ENST00000637619 75 ntBASIC-3.35□□□□□ -2.95
CHMP4AQ9BY43 RNY4-201ENST00000516507 96 ntBASIC-3.36□□□□□ -2.95
CHMP4AQ9BY43 Y_RNA.349-201ENST00000365406 102 ntBASIC-3.38□□□□□ -2.95
CHMP4AQ9BY43 MIR3139-201ENST00000579145 76 ntBASIC-3.38□□□□□ -2.95
CHMP4AQ9BY43 RNU6-361P-201ENST00000364454 107 ntBASIC-3.4□□□□□ -2.95
CHMP4AQ9BY43 Y_RNA.501-201ENST00000384467 103 ntBASIC-3.41□□□□□ -2.96
CHMP4AQ9BY43 AL451105.1-201ENST00000450005 189 ntBASIC-3.42□□□□□ -2.96
CHMP4AQ9BY43 MIR3938-201ENST00000582157 103 ntBASIC-3.42□□□□□ -2.96
CHMP4AQ9BY43 RNU6-1255P-201ENST00000363434 112 ntBASIC-3.43□□□□□ -2.96
CHMP4AQ9BY43 Y_RNA.647-201ENST00000459194 112 ntBASIC-3.43□□□□□ -2.96
CHMP4AQ9BY43 Y_RNA.640-201ENST00000459296 112 ntBASIC-3.43□□□□□ -2.96
CHMP4AQ9BY43 Y_RNA.803-201ENST00000614432 112 ntBASIC-3.43□□□□□ -2.96
CHMP4AQ9BY43 Y_RNA.815-201ENST00000616655 112 ntBASIC-3.43□□□□□ -2.96
CHMP4AQ9BY43 Y_RNA.795-201ENST00000619475 112 ntBASIC-3.43□□□□□ -2.96
CHMP4AQ9BY43 Y_RNA.827-201ENST00000638104 112 ntBASIC-3.43□□□□□ -2.96
CHMP4AQ9BY43 SNORD78.1-201ENST00000390866 65 ntBASIC-3.44□□□□□ -2.96
CHMP4AQ9BY43 RNA5SP225-201ENST00000410874 135 ntBASIC-3.44□□□□□ -2.96
CHMP4AQ9BY43 RNU6-800P-201ENST00000384473 103 ntBASIC-3.45□□□□□ -2.96
CHMP4AQ9BY43 MT-TM-201ENST00000387377 68 ntBASIC-3.45□□□□□ -2.96
CHMP4AQ9BY43 Y_RNA.565-201ENST00000384719 101 ntBASIC-3.47□□□□□ -2.96
CHMP4AQ9BY43 MIR4426-201ENST00000640330 63 ntBASIC-3.48□□□□□ -2.97
CHMP4AQ9BY43 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-3.51□□□□□ -2.97
CHMP4AQ9BY43 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-3.53□□□□□ -2.97
CHMP4AQ9BY43 RNU6-68P-201ENST00000516576 104 ntBASIC-3.53□□□□□ -2.97
CHMP4AQ9BY43 VTRNA2-1-201ENST00000602301 127 ntBASIC-3.53□□□□□ -2.97
CHMP4AQ9BY43 TARS-215ENST00000626210 201 ntTSL 5 BASIC-3.53□□□□□ -2.97
CHMP4AQ9BY43 MIR4662A-201ENST00000637499 67 ntBASIC-3.55□□□□□ -2.98
CHMP4AQ9BY43 MIR379-201ENST00000362218 67 ntBASIC-3.56□□□□□ -2.98
CHMP4AQ9BY43 SNORD113-3-201ENST00000364830 72 ntBASIC-3.56□□□□□ -2.98
CHMP4AQ9BY43 RNU6-1324P-201ENST00000384222 107 ntBASIC-3.56□□□□□ -2.98
CHMP4AQ9BY43 Y_RNA.43-201ENST00000362670 111 ntBASIC-3.57□□□□□ -2.98
CHMP4AQ9BY43 RNU6-300P-201ENST00000459080 104 ntBASIC-3.57□□□□□ -2.98
CHMP4AQ9BY43 RNU6-419P-201ENST00000517030 63 ntBASIC-3.58□□□□□ -2.98
CHMP4AQ9BY43 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-3.58□□□□□ -2.98
CHMP4AQ9BY43 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-3.58□□□□□ -2.98
CHMP4AQ9BY43 RNU6-776P-201ENST00000364403 104 ntBASIC-3.59□□□□□ -2.98
CHMP4AQ9BY43 RNU6-1022P-201ENST00000365049 104 ntBASIC-3.59□□□□□ -2.98
CHMP4AQ9BY43 RNY4P9-201ENST00000363194 97 ntBASIC-3.6□□□□□ -2.99
CHMP4AQ9BY43 AC110620.1-201ENST00000416042 228 ntBASIC-3.6□□□□□ -2.99
CHMP4AQ9BY43 RNU6-176P-201ENST00000517196 105 ntBASIC-3.62□□□□□ -2.99
CHMP4AQ9BY43 RNU6-912P-201ENST00000363800 104 ntBASIC-3.63□□□□□ -2.99
CHMP4AQ9BY43 RNU6-590P-201ENST00000365039 107 ntBASIC-3.63□□□□□ -2.99
CHMP4AQ9BY43 MIR548AJ2-201ENST00000408539 92 ntBASIC-3.63□□□□□ -2.99
CHMP4AQ9BY43 MIR1302-4-201ENST00000408701 150 ntBASIC-3.63□□□□□ -2.99
CHMP4AQ9BY43 RNU6-1191P-201ENST00000516799 107 ntBASIC-3.63□□□□□ -2.99
CHMP4AQ9BY43 Y_RNA.129-201ENST00000363392 110 ntBASIC-3.64□□□□□ -2.99
CHMP4AQ9BY43 RNU6-141P-201ENST00000410499 105 ntBASIC-3.64□□□□□ -2.99
CHMP4AQ9BY43 RNU6-1047P-201ENST00000364418 107 ntBASIC-3.67□□□□□ -3
CHMP4AQ9BY43 Y_RNA.519-201ENST00000384553 102 ntBASIC-3.69□□□□□ -3
CHMP4AQ9BY43 RNU6-1306P-201ENST00000365219 99 ntBASIC-3.7□□□□□ -3
CHMP4AQ9BY43 MIRLET7A2-201ENST00000362105 72 ntBASIC-3.72□□□□□ -3
CHMP4AQ9BY43 Y_RNA.186-201ENST00000363899 92 ntBASIC-3.72□□□□□ -3
CHMP4AQ9BY43 RNU6-1079P-201ENST00000362861 110 ntBASIC-3.75□□□□□ -3.01
CHMP4AQ9BY43 RNU6-742P-201ENST00000365289 107 ntBASIC-3.75□□□□□ -3.01
CHMP4AQ9BY43 Y_RNA.513-201ENST00000384522 100 ntBASIC-3.77□□□□□ -3.01
CHMP4AQ9BY43 Y_RNA.386-201ENST00000383913 105 ntBASIC-3.78□□□□□ -3.01
CHMP4AQ9BY43 Y_RNA.320-201ENST00000365144 102 ntBASIC-3.79□□□□□ -3.02
CHMP4AQ9BY43 RNU6-471P-201ENST00000383944 106 ntBASIC-3.79□□□□□ -3.02
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms