Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 SNORD45.2-201ENST00000363552 72 ntBASIC-1.61□□□□□ -2.67
SCN2AQ99250 RNA5SP225-201ENST00000410874 135 ntBASIC-1.61□□□□□ -2.67
SCN2AQ99250 U6.97-201ENST00000636904 101 ntBASIC-1.61□□□□□ -2.67
SCN2AQ99250 RNU6-573P-201ENST00000383938 106 ntBASIC-1.62□□□□□ -2.67
SCN2AQ99250 AC103706.3-201ENST00000636297 85 ntBASIC-1.62□□□□□ -2.67
SCN2AQ99250 RNU6-361P-201ENST00000364454 107 ntBASIC-1.63□□□□□ -2.67
SCN2AQ99250 RNA5SP86-201ENST00000390869 98 ntBASIC-1.63□□□□□ -2.67
SCN2AQ99250 MIR548AM-201ENST00000584298 74 ntBASIC-1.63□□□□□ -2.67
SCN2AQ99250 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.64□□□□□ -2.67
SCN2AQ99250 RNU6-828P-201ENST00000364876 107 ntBASIC-1.64□□□□□ -2.67
SCN2AQ99250 AC110620.1-201ENST00000416042 228 ntBASIC-1.64□□□□□ -2.67
SCN2AQ99250 AC108019.1-201ENST00000512540 175 ntBASIC-1.64□□□□□ -2.67
SCN2AQ99250 RNU6-231P-201ENST00000517122 103 ntBASIC-1.64□□□□□ -2.67
SCN2AQ99250 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.64□□□□□ -2.67
SCN2AQ99250 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.65□□□□□ -2.67
SCN2AQ99250 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.66□□□□□ -2.67
SCN2AQ99250 AC013734.1-201ENST00000619329 111 ntBASIC-1.66□□□□□ -2.67
SCN2AQ99250 MIR4662A-201ENST00000637499 67 ntBASIC-1.66□□□□□ -2.68
SCN2AQ99250 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.67□□□□□ -2.68
SCN2AQ99250 MIR4756-201ENST00000577874 78 ntBASIC-1.67□□□□□ -2.68
SCN2AQ99250 MIR487B-201ENST00000385021 84 ntBASIC-1.67□□□□□ -2.68
SCN2AQ99250 RNU6-1275P-201ENST00000391087 107 ntBASIC-1.67□□□□□ -2.68
SCN2AQ99250 RNU6-776P-201ENST00000364403 104 ntBASIC-1.69□□□□□ -2.68
SCN2AQ99250 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.69□□□□□ -2.68
SCN2AQ99250 Y_RNA.685-201ENST00000516532 108 ntBASIC-1.69□□□□□ -2.68
SCN2AQ99250 RNU6-118P-201ENST00000516552 102 ntBASIC-1.69□□□□□ -2.68
SCN2AQ99250 RNA5SP93-201ENST00000362525 114 ntBASIC-1.71□□□□□ -2.68
SCN2AQ99250 snoU13.10-201ENST00000459301 103 ntBASIC-1.71□□□□□ -2.68
SCN2AQ99250 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.71□□□□□ -2.68
SCN2AQ99250 MIR548W-201ENST00000581970 74 ntBASIC-1.71□□□□□ -2.68
SCN2AQ99250 MIR202-201ENST00000362219 110 ntBASIC-1.73□□□□□ -2.69
SCN2AQ99250 RNA5SP405-201ENST00000363059 114 ntBASIC-1.73□□□□□ -2.69
SCN2AQ99250 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.73□□□□□ -2.69
SCN2AQ99250 RNU6-980P-201ENST00000516925 103 ntBASIC-1.73□□□□□ -2.69
SCN2AQ99250 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.73□□□□□ -2.69
SCN2AQ99250 MIR4426-201ENST00000640330 63 ntBASIC-1.73□□□□□ -2.69
SCN2AQ99250 MIR3139-201ENST00000579145 76 ntBASIC-1.74□□□□□ -2.69
SCN2AQ99250 MIR496-201ENST00000385226 102 ntBASIC-1.74□□□□□ -2.69
SCN2AQ99250 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.75□□□□□ -2.69
SCN2AQ99250 U6.111-201ENST00000636093 83 ntBASIC-1.76□□□□□ -2.69
SCN2AQ99250 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.76□□□□□ -2.69
SCN2AQ99250 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.76□□□□□ -2.69
SCN2AQ99250 Y_RNA.565-201ENST00000384719 101 ntBASIC-1.76□□□□□ -2.69
SCN2AQ99250 MIR548X-201ENST00000580069 75 ntBASIC-1.76□□□□□ -2.69
SCN2AQ99250 RNU6-590P-201ENST00000365039 107 ntBASIC-1.79□□□□□ -2.7
SCN2AQ99250 SNORA17.4-201ENST00000391287 132 ntBASIC-1.79□□□□□ -2.7
SCN2AQ99250 RNU6-122P-201ENST00000516818 107 ntBASIC-1.79□□□□□ -2.7
SCN2AQ99250 RNU6-176P-201ENST00000517196 105 ntBASIC-1.79□□□□□ -2.7
SCN2AQ99250 RNU6-530P-201ENST00000391180 107 ntBASIC-1.79□□□□□ -2.7
SCN2AQ99250 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.8□□□□□ -2.7
SCN2AQ99250 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.8□□□□□ -2.7
SCN2AQ99250 MIR581-201ENST00000384895 96 ntBASIC-1.8□□□□□ -2.7
SCN2AQ99250 RNU6-800P-201ENST00000384473 103 ntBASIC-1.82□□□□□ -2.7
SCN2AQ99250 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.82□□□□□ -2.7
SCN2AQ99250 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.83□□□□□ -2.7
SCN2AQ99250 AL451105.1-201ENST00000450005 189 ntBASIC-1.83□□□□□ -2.7
SCN2AQ99250 RNU6-300P-201ENST00000459080 104 ntBASIC-1.83□□□□□ -2.7
SCN2AQ99250 RNU6-419P-201ENST00000517030 63 ntBASIC-1.83□□□□□ -2.7
SCN2AQ99250 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.84□□□□□ -2.7
SCN2AQ99250 RNU4-88P-201ENST00000411220 86 ntBASIC-1.84□□□□□ -2.7
SCN2AQ99250 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.84□□□□□ -2.7
SCN2AQ99250 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.85□□□□□ -2.71
SCN2AQ99250 SNORD54-201ENST00000459159 67 ntBASIC-1.86□□□□□ -2.71
SCN2AQ99250 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.87□□□□□ -2.71
SCN2AQ99250 RNU6-194P-201ENST00000363862 105 ntBASIC-1.88□□□□□ -2.71
SCN2AQ99250 RNU6-68P-201ENST00000516576 104 ntBASIC-1.88□□□□□ -2.71
SCN2AQ99250 AC114801.3-201ENST00000510231 177 ntBASIC-1.9□□□□□ -2.71
SCN2AQ99250 RNU6-912P-201ENST00000363800 104 ntBASIC-1.91□□□□□ -2.71
SCN2AQ99250 MT-TM-201ENST00000387377 68 ntBASIC-1.91□□□□□ -2.71
SCN2AQ99250 MIR4748-201ENST00000578076 82 ntBASIC-1.91□□□□□ -2.71
SCN2AQ99250 MIR466-201ENST00000580653 84 ntBASIC-1.91□□□□□ -2.71
SCN2AQ99250 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.91□□□□□ -2.71
SCN2AQ99250 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.91□□□□□ -2.72
SCN2AQ99250 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.92□□□□□ -2.72
SCN2AQ99250 FTX_4.1-201ENST00000616291 147 ntBASIC-1.92□□□□□ -2.72
SCN2AQ99250 MIR4317-201ENST00000637586 65 ntBASIC-1.92□□□□□ -2.72
SCN2AQ99250 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.95□□□□□ -2.72
SCN2AQ99250 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.95□□□□□ -2.72
SCN2AQ99250 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.95□□□□□ -2.72
SCN2AQ99250 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.95□□□□□ -2.72
SCN2AQ99250 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.95□□□□□ -2.72
SCN2AQ99250 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.95□□□□□ -2.72
SCN2AQ99250 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.95□□□□□ -2.72
SCN2AQ99250 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.95□□□□□ -2.72
SCN2AQ99250 SNORA72.7-201ENST00000516349 94 ntBASIC-1.95□□□□□ -2.72
SCN2AQ99250 RNY4P9-201ENST00000363194 97 ntBASIC-1.96□□□□□ -2.72
SCN2AQ99250 RNU4-33P-201ENST00000364316 85 ntBASIC-1.96□□□□□ -2.72
SCN2AQ99250 MIR548AL-201ENST00000578416 97 ntBASIC-1.96□□□□□ -2.72
SCN2AQ99250 RNU6-742P-201ENST00000365289 107 ntBASIC-1.97□□□□□ -2.72
SCN2AQ99250 SNORD113-3-201ENST00000364830 72 ntBASIC-1.98□□□□□ -2.73
SCN2AQ99250 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.99□□□□□ -2.73
SCN2AQ99250 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.99□□□□□ -2.73
SCN2AQ99250 RNY4-201ENST00000516507 96 ntBASIC-1.99□□□□□ -2.73
SCN2AQ99250 RNU6-1306P-201ENST00000365219 99 ntBASIC-2□□□□□ -2.73
SCN2AQ99250 AC097484.2-201ENST00000509147 251 ntBASIC-2□□□□□ -2.73
SCN2AQ99250 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.01□□□□□ -2.73
SCN2AQ99250 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-2.01□□□□□ -2.73
SCN2AQ99250 MIR548H4-201ENST00000408689 111 ntBASIC-2.02□□□□□ -2.73
SCN2AQ99250 Y_RNA.421-201ENST00000384052 101 ntBASIC-2.03□□□□□ -2.73
SCN2AQ99250 RNU6-808P-201ENST00000391233 108 ntBASIC-2.03□□□□□ -2.73
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms