Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 MIR4441-201ENST00000582623 100 ntBASIC-1.43□□□□□ -2.64
ZNF560Q96MR9 RNU6-1255P-201ENST00000363434 112 ntBASIC-1.44□□□□□ -2.64
ZNF560Q96MR9 SNORD60-201ENST00000383903 83 ntBASIC-1.44□□□□□ -2.64
ZNF560Q96MR9 RNU6-871P-201ENST00000516122 100 ntBASIC-1.44□□□□□ -2.64
ZNF560Q96MR9 RNU6-539P-201ENST00000516665 103 ntBASIC-1.44□□□□□ -2.64
ZNF560Q96MR9 MIR466-201ENST00000580653 84 ntBASIC-1.44□□□□□ -2.64
ZNF560Q96MR9 AC103706.3-201ENST00000636297 85 ntBASIC-1.44□□□□□ -2.64
ZNF560Q96MR9 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.45□□□□□ -2.64
ZNF560Q96MR9 RNU6-800P-201ENST00000384473 103 ntBASIC-1.45□□□□□ -2.64
ZNF560Q96MR9 SNORD78.1-201ENST00000390866 65 ntBASIC-1.45□□□□□ -2.64
ZNF560Q96MR9 RNU7-119P-201ENST00000459279 63 ntBASIC-1.45□□□□□ -2.64
ZNF560Q96MR9 MIR4426-201ENST00000640330 63 ntBASIC-1.45□□□□□ -2.64
ZNF560Q96MR9 RNU6-940P-201ENST00000363433 104 ntBASIC-1.46□□□□□ -2.64
ZNF560Q96MR9 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.46□□□□□ -2.64
ZNF560Q96MR9 MIR3938-201ENST00000582157 103 ntBASIC-1.46□□□□□ -2.64
ZNF560Q96MR9 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.46□□□□□ -2.64
ZNF560Q96MR9 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.47□□□□□ -2.64
ZNF560Q96MR9 RNU6-742P-201ENST00000365289 107 ntBASIC-1.47□□□□□ -2.64
ZNF560Q96MR9 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.47□□□□□ -2.64
ZNF560Q96MR9 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.48□□□□□ -2.65
ZNF560Q96MR9 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.48□□□□□ -2.65
ZNF560Q96MR9 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.48□□□□□ -2.65
ZNF560Q96MR9 AC110620.1-201ENST00000416042 228 ntBASIC-1.48□□□□□ -2.65
ZNF560Q96MR9 RNU6-419P-201ENST00000517030 63 ntBASIC-1.49□□□□□ -2.65
ZNF560Q96MR9 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.49□□□□□ -2.65
ZNF560Q96MR9 U4.2-201ENST00000618561 85 ntBASIC-1.49□□□□□ -2.65
ZNF560Q96MR9 Y_RNA.43-201ENST00000362670 111 ntBASIC-1.51□□□□□ -2.65
ZNF560Q96MR9 SNORD113-3-201ENST00000364830 72 ntBASIC-1.51□□□□□ -2.65
ZNF560Q96MR9 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.51□□□□□ -2.65
ZNF560Q96MR9 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.51□□□□□ -2.65
ZNF560Q96MR9 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.51□□□□□ -2.65
ZNF560Q96MR9 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.51□□□□□ -2.65
ZNF560Q96MR9 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.51□□□□□ -2.65
ZNF560Q96MR9 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.51□□□□□ -2.65
ZNF560Q96MR9 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.51□□□□□ -2.65
ZNF560Q96MR9 MIR4679-1-201ENST00000637619 75 ntBASIC-1.51□□□□□ -2.65
ZNF560Q96MR9 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.52□□□□□ -2.65
ZNF560Q96MR9 RNU6-912P-201ENST00000363800 104 ntBASIC-1.52□□□□□ -2.65
ZNF560Q96MR9 RNU6-776P-201ENST00000364403 104 ntBASIC-1.52□□□□□ -2.65
ZNF560Q96MR9 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.52□□□□□ -2.65
ZNF560Q96MR9 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.52□□□□□ -2.65
ZNF560Q96MR9 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.52□□□□□ -2.65
ZNF560Q96MR9 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.53□□□□□ -2.65
ZNF560Q96MR9 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.53□□□□□ -2.65
ZNF560Q96MR9 RNU6-590P-201ENST00000365039 107 ntBASIC-1.53□□□□□ -2.65
ZNF560Q96MR9 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.53□□□□□ -2.65
ZNF560Q96MR9 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.53□□□□□ -2.65
ZNF560Q96MR9 RNU6-300P-201ENST00000459080 104 ntBASIC-1.53□□□□□ -2.65
ZNF560Q96MR9 RNU6-446P-201ENST00000362827 106 ntBASIC-1.54□□□□□ -2.66
ZNF560Q96MR9 RNA5SP405-201ENST00000363059 114 ntBASIC-1.54□□□□□ -2.66
ZNF560Q96MR9 AC097484.2-201ENST00000509147 251 ntBASIC-1.54□□□□□ -2.66
ZNF560Q96MR9 RNU6-118P-201ENST00000516552 102 ntBASIC-1.54□□□□□ -2.66
ZNF560Q96MR9 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.55□□□□□ -2.66
ZNF560Q96MR9 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.56□□□□□ -2.66
ZNF560Q96MR9 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.56□□□□□ -2.66
ZNF560Q96MR9 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.56□□□□□ -2.66
ZNF560Q96MR9 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.56□□□□□ -2.66
ZNF560Q96MR9 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.56□□□□□ -2.66
ZNF560Q96MR9 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.56□□□□□ -2.66
ZNF560Q96MR9 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.57□□□□□ -2.66
ZNF560Q96MR9 SNORD45.2-201ENST00000363552 72 ntBASIC-1.57□□□□□ -2.66
ZNF560Q96MR9 RNU6-194P-201ENST00000363862 105 ntBASIC-1.57□□□□□ -2.66
ZNF560Q96MR9 MIR1302-4-201ENST00000408701 150 ntBASIC-1.58□□□□□ -2.66
ZNF560Q96MR9 SNORD113-4-201ENST00000364802 75 ntBASIC-1.59□□□□□ -2.66
ZNF560Q96MR9 SNORD114-3-201ENST00000364969 75 ntBASIC-1.59□□□□□ -2.66
ZNF560Q96MR9 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.59□□□□□ -2.66
ZNF560Q96MR9 FTX_4.1-201ENST00000616291 147 ntBASIC-1.59□□□□□ -2.66
ZNF560Q96MR9 MIR379-201ENST00000362218 67 ntBASIC-1.6□□□□□ -2.67
ZNF560Q96MR9 RNU6-471P-201ENST00000383944 106 ntBASIC-1.6□□□□□ -2.67
ZNF560Q96MR9 MIR1254-1-201ENST00000408257 97 ntBASIC-1.6□□□□□ -2.67
ZNF560Q96MR9 MIR548X-201ENST00000580069 75 ntBASIC-1.6□□□□□ -2.67
ZNF560Q96MR9 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.6□□□□□ -2.67
ZNF560Q96MR9 MIR4662A-201ENST00000637499 67 ntBASIC-1.6□□□□□ -2.67
ZNF560Q96MR9 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.61□□□□□ -2.67
ZNF560Q96MR9 AC114801.3-201ENST00000510231 177 ntBASIC-1.61□□□□□ -2.67
ZNF560Q96MR9 MIR4748-201ENST00000578076 82 ntBASIC-1.61□□□□□ -2.67
ZNF560Q96MR9 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.62□□□□□ -2.67
ZNF560Q96MR9 RNY4P27-201ENST00000363341 96 ntBASIC-1.63□□□□□ -2.67
ZNF560Q96MR9 RNU6-1275P-201ENST00000391087 107 ntBASIC-1.63□□□□□ -2.67
ZNF560Q96MR9 RNU6-141P-201ENST00000410499 105 ntBASIC-1.64□□□□□ -2.67
ZNF560Q96MR9 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.64□□□□□ -2.67
ZNF560Q96MR9 RNU6-1169P-201ENST00000363537 103 ntBASIC-1.65□□□□□ -2.67
ZNF560Q96MR9 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.65□□□□□ -2.67
ZNF560Q96MR9 RNU6-176P-201ENST00000517196 105 ntBASIC-1.65□□□□□ -2.67
ZNF560Q96MR9 MIR633-201ENST00000384821 98 ntBASIC-1.66□□□□□ -2.68
ZNF560Q96MR9 Y_RNA.685-201ENST00000516532 108 ntBASIC-1.66□□□□□ -2.68
ZNF560Q96MR9 MIR3139-201ENST00000579145 76 ntBASIC-1.66□□□□□ -2.68
ZNF560Q96MR9 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.67□□□□□ -2.68
ZNF560Q96MR9 RNU6-829P-201ENST00000363700 112 ntBASIC-1.68□□□□□ -2.68
ZNF560Q96MR9 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.69□□□□□ -2.68
ZNF560Q96MR9 Y_RNA.63-201ENST00000362841 102 ntBASIC-1.7□□□□□ -2.68
ZNF560Q96MR9 MIR548H4-201ENST00000408689 111 ntBASIC-1.7□□□□□ -2.68
ZNF560Q96MR9 MIR1207-201ENST00000408249 87 ntBASIC-1.71□□□□□ -2.68
ZNF560Q96MR9 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.72□□□□□ -2.68
ZNF560Q96MR9 MT-TM-201ENST00000387377 68 ntBASIC-1.72□□□□□ -2.68
ZNF560Q96MR9 MIR4723-201ENST00000585070 81 ntBASIC-1.72□□□□□ -2.68
ZNF560Q96MR9 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.73□□□□□ -2.69
ZNF560Q96MR9 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.73□□□□□ -2.69
ZNF560Q96MR9 RNU4-33P-201ENST00000364316 85 ntBASIC-1.75□□□□□ -2.69
ZNF560Q96MR9 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.76□□□□□ -2.69
Retrieved 100 of 98,524 protein–RNA pairs in 7.3 ms