Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RNU6-563P-201ENST00000364872 108 ntBASIC-1.23□□□□□ -2.61
CCDC140Q96MF4 MIR1207-201ENST00000408249 87 ntBASIC-1.23□□□□□ -2.61
CCDC140Q96MF4 SNORD114-3-201ENST00000364969 75 ntBASIC-1.24□□□□□ -2.61
CCDC140Q96MF4 RNU6-706P-201ENST00000517229 104 ntBASIC-1.24□□□□□ -2.61
CCDC140Q96MF4 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.25□□□□□ -2.61
CCDC140Q96MF4 RNA5SP180-201ENST00000516181 101 ntBASIC-1.25□□□□□ -2.61
CCDC140Q96MF4 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.25□□□□□ -2.61
CCDC140Q96MF4 Y_RNA.379-201ENST00000365653 102 ntBASIC-1.26□□□□□ -2.61
CCDC140Q96MF4 MIR1285-2-201ENST00000408311 88 ntBASIC-1.26□□□□□ -2.61
CCDC140Q96MF4 AC013734.1-201ENST00000619329 111 ntBASIC-1.26□□□□□ -2.61
CCDC140Q96MF4 MIR4441-201ENST00000582623 100 ntBASIC-1.27□□□□□ -2.61
CCDC140Q96MF4 MIR6874-201ENST00000635894 71 ntBASIC-1.27□□□□□ -2.61
CCDC140Q96MF4 U6.97-201ENST00000636904 101 ntBASIC-1.27□□□□□ -2.61
CCDC140Q96MF4 MIR4426-201ENST00000640330 63 ntBASIC-1.27□□□□□ -2.61
CCDC140Q96MF4 RNU6-742P-201ENST00000365289 107 ntBASIC-1.28□□□□□ -2.61
CCDC140Q96MF4 SNORA17.4-201ENST00000391287 132 ntBASIC-1.28□□□□□ -2.61
CCDC140Q96MF4 RNU6-361P-201ENST00000364454 107 ntBASIC-1.29□□□□□ -2.62
CCDC140Q96MF4 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.29□□□□□ -2.62
CCDC140Q96MF4 SNORD60-201ENST00000383903 83 ntBASIC-1.29□□□□□ -2.62
CCDC140Q96MF4 RNU4-37P-201ENST00000410214 84 ntBASIC-1.29□□□□□ -2.62
CCDC140Q96MF4 RNU6-987P-201ENST00000384759 104 ntBASIC-1.31□□□□□ -2.62
CCDC140Q96MF4 HLA-S-202ENST00000425174 53 ntBASIC-1.31□□□□□ -2.62
CCDC140Q96MF4 AC091912.2-201ENST00000624798 167 ntBASIC-1.31□□□□□ -2.62
CCDC140Q96MF4 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.34□□□□□ -2.62
CCDC140Q96MF4 RNU6-79P-201ENST00000362511 107 ntBASIC-1.35□□□□□ -2.63
CCDC140Q96MF4 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.36□□□□□ -2.63
CCDC140Q96MF4 RNU6-141P-201ENST00000410499 105 ntBASIC-1.37□□□□□ -2.63
CCDC140Q96MF4 RNU6-300P-201ENST00000459080 104 ntBASIC-1.37□□□□□ -2.63
CCDC140Q96MF4 MIR5591-201ENST00000578248 65 ntBASIC-1.37□□□□□ -2.63
CCDC140Q96MF4 MIR4520-1-201ENST00000582609 70 ntBASIC-1.38□□□□□ -2.63
CCDC140Q96MF4 AC138207.3-201ENST00000585289 166 ntBASIC-1.39□□□□□ -2.63
CCDC140Q96MF4 RNU6-226P-201ENST00000363778 107 ntBASIC-1.4□□□□□ -2.63
CCDC140Q96MF4 MIR548AL-201ENST00000578416 97 ntBASIC-1.4□□□□□ -2.63
CCDC140Q96MF4 RNU6-838P-201ENST00000363399 108 ntBASIC-1.41□□□□□ -2.64
CCDC140Q96MF4 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.41□□□□□ -2.64
CCDC140Q96MF4 RNU4-88P-201ENST00000411220 86 ntBASIC-1.41□□□□□ -2.64
CCDC140Q96MF4 RNY4P27-201ENST00000363341 96 ntBASIC-1.43□□□□□ -2.64
CCDC140Q96MF4 MIR548N-201ENST00000408742 75 ntBASIC-1.43□□□□□ -2.64
CCDC140Q96MF4 RNU6-930P-201ENST00000390938 100 ntBASIC-1.44□□□□□ -2.64
CCDC140Q96MF4 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.46□□□□□ -2.64
CCDC140Q96MF4 MIR581-201ENST00000384895 96 ntBASIC-1.46□□□□□ -2.64
CCDC140Q96MF4 RNU6-176P-201ENST00000517196 105 ntBASIC-1.46□□□□□ -2.64
CCDC140Q96MF4 MIR1246-201ENST00000636535 73 ntBASIC-1.46□□□□□ -2.64
CCDC140Q96MF4 MIR4770-201ENST00000579149 58 ntBASIC-1.48□□□□□ -2.65
CCDC140Q96MF4 RNU6-400P-201ENST00000391173 106 ntBASIC-1.49□□□□□ -2.65
CCDC140Q96MF4 MIR6502-201ENST00000617296 76 ntBASIC-1.49□□□□□ -2.65
CCDC140Q96MF4 SNORD18C-201ENST00000362704 69 ntBASIC-1.51□□□□□ -2.65
CCDC140Q96MF4 RNU6-1204P-201ENST00000363948 107 ntBASIC-1.51□□□□□ -2.65
CCDC140Q96MF4 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.52□□□□□ -2.65
CCDC140Q96MF4 MIR4317-201ENST00000637586 65 ntBASIC-1.52□□□□□ -2.65
CCDC140Q96MF4 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.56□□□□□ -2.66
CCDC140Q96MF4 MIR548H1-201ENST00000408610 102 ntBASIC-1.57□□□□□ -2.66
CCDC140Q96MF4 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.58□□□□□ -2.66
CCDC140Q96MF4 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.58□□□□□ -2.66
CCDC140Q96MF4 MIR548F3-201ENST00000408509 87 ntBASIC-1.58□□□□□ -2.66
CCDC140Q96MF4 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.59□□□□□ -2.66
CCDC140Q96MF4 RNA5SP86-201ENST00000390869 98 ntBASIC-1.59□□□□□ -2.66
CCDC140Q96MF4 RNU6-695P-201ENST00000391157 104 ntBASIC-1.59□□□□□ -2.66
CCDC140Q96MF4 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.61□□□□□ -2.67
CCDC140Q96MF4 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.63□□□□□ -2.67
CCDC140Q96MF4 MIR487B-201ENST00000385021 84 ntBASIC-1.63□□□□□ -2.67
CCDC140Q96MF4 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.63□□□□□ -2.67
CCDC140Q96MF4 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.64□□□□□ -2.67
CCDC140Q96MF4 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.64□□□□□ -2.67
CCDC140Q96MF4 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.64□□□□□ -2.67
CCDC140Q96MF4 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.64□□□□□ -2.67
CCDC140Q96MF4 SNORD18.1-201ENST00000363807 70 ntBASIC-1.65□□□□□ -2.67
CCDC140Q96MF4 MIR548H4-201ENST00000408689 111 ntBASIC-1.65□□□□□ -2.67
CCDC140Q96MF4 RNU6-986P-201ENST00000363133 102 ntBASIC-1.66□□□□□ -2.68
CCDC140Q96MF4 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.66□□□□□ -2.68
CCDC140Q96MF4 MIR545-201ENST00000385085 106 ntBASIC-1.66□□□□□ -2.68
CCDC140Q96MF4 MIR379-201ENST00000362218 67 ntBASIC-1.67□□□□□ -2.68
CCDC140Q96MF4 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.68□□□□□ -2.68
CCDC140Q96MF4 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.69□□□□□ -2.68
CCDC140Q96MF4 RNU6-983P-201ENST00000516004 103 ntBASIC-1.69□□□□□ -2.68
CCDC140Q96MF4 RNU6-119P-201ENST00000364882 107 ntBASIC-1.7□□□□□ -2.68
CCDC140Q96MF4 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.7□□□□□ -2.68
CCDC140Q96MF4 MIR3123-201ENST00000583417 75 ntBASIC-1.7□□□□□ -2.68
CCDC140Q96MF4 RNU6-68P-201ENST00000516576 104 ntBASIC-1.72□□□□□ -2.68
CCDC140Q96MF4 RNU6-822P-201ENST00000362707 106 ntBASIC-1.73□□□□□ -2.69
CCDC140Q96MF4 RNU6-1326P-201ENST00000391262 107 ntBASIC-1.73□□□□□ -2.69
CCDC140Q96MF4 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.74□□□□□ -2.69
CCDC140Q96MF4 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.74□□□□□ -2.69
CCDC140Q96MF4 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.74□□□□□ -2.69
CCDC140Q96MF4 RNU6-912P-201ENST00000363800 104 ntBASIC-1.75□□□□□ -2.69
CCDC140Q96MF4 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.76□□□□□ -2.69
CCDC140Q96MF4 AC108019.1-201ENST00000512540 175 ntBASIC-1.76□□□□□ -2.69
CCDC140Q96MF4 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.78□□□□□ -2.69
CCDC140Q96MF4 MIR4756-201ENST00000577874 78 ntBASIC-1.78□□□□□ -2.69
CCDC140Q96MF4 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.79□□□□□ -2.7
CCDC140Q96MF4 Y_RNA.345-201ENST00000365384 92 ntBASIC-1.8□□□□□ -2.7
CCDC140Q96MF4 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.8□□□□□ -2.7
CCDC140Q96MF4 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.82□□□□□ -2.7
CCDC140Q96MF4 RNY4P7-201ENST00000364600 96 ntBASIC-1.84□□□□□ -2.7
CCDC140Q96MF4 snoU13.10-201ENST00000459301 103 ntBASIC-1.84□□□□□ -2.7
CCDC140Q96MF4 MIR496-201ENST00000385226 102 ntBASIC-1.85□□□□□ -2.71
CCDC140Q96MF4 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.86□□□□□ -2.71
CCDC140Q96MF4 RNU6-841P-201ENST00000383872 107 ntBASIC-1.87□□□□□ -2.71
CCDC140Q96MF4 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.87□□□□□ -2.71
CCDC140Q96MF4 SNORD115.2-201ENST00000391126 59 ntBASIC-1.87□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms