Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RNU6-634P-201ENST00000459134 106 ntBASIC-3.47□□□□□ -2.96
HDDC3Q8N4P3 snoU13.10-201ENST00000459301 103 ntBASIC-3.47□□□□□ -2.96
HDDC3Q8N4P3 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-3.47□□□□□ -2.96
HDDC3Q8N4P3 SNORA40B-201ENST00000385573 128 ntBASIC-3.48□□□□□ -2.97
HDDC3Q8N4P3 AL603908.1-201ENST00000406098 201 ntBASIC-3.48□□□□□ -2.97
HDDC3Q8N4P3 Y_RNA.694-201ENST00000516677 117 ntBASIC-3.48□□□□□ -2.97
HDDC3Q8N4P3 Y_RNA.211-201ENST00000364164 101 ntBASIC-3.5□□□□□ -2.97
HDDC3Q8N4P3 SNORA25.5-201ENST00000363782 126 ntBASIC-3.51□□□□□ -2.97
HDDC3Q8N4P3 SNORA17.4-201ENST00000391287 132 ntBASIC-3.51□□□□□ -2.97
HDDC3Q8N4P3 RNU7-119P-201ENST00000459279 63 ntBASIC-3.51□□□□□ -2.97
HDDC3Q8N4P3 SNORD45.2-201ENST00000363552 72 ntBASIC-3.52□□□□□ -2.97
HDDC3Q8N4P3 RNU6-1306P-201ENST00000365219 99 ntBASIC-3.52□□□□□ -2.97
HDDC3Q8N4P3 RNU6-122P-201ENST00000516818 107 ntBASIC-3.52□□□□□ -2.97
HDDC3Q8N4P3 MIR466-201ENST00000580653 84 ntBASIC-3.52□□□□□ -2.97
HDDC3Q8N4P3 MIR548W-201ENST00000581970 74 ntBASIC-3.52□□□□□ -2.97
HDDC3Q8N4P3 SNORA25.4-201ENST00000363666 124 ntBASIC-3.53□□□□□ -2.97
HDDC3Q8N4P3 RNU6-820P-201ENST00000384273 107 ntBASIC-3.53□□□□□ -2.97
HDDC3Q8N4P3 MIR548N-201ENST00000408742 75 ntBASIC-3.53□□□□□ -2.97
HDDC3Q8N4P3 RNU6-153P-201ENST00000364422 104 ntBASIC-3.54□□□□□ -2.98
HDDC3Q8N4P3 RNU6-1296P-201ENST00000383879 107 ntBASIC-3.54□□□□□ -2.98
HDDC3Q8N4P3 Y_RNA.501-201ENST00000384467 103 ntBASIC-3.54□□□□□ -2.98
HDDC3Q8N4P3 RNU6-361P-201ENST00000364454 107 ntBASIC-3.56□□□□□ -2.98
HDDC3Q8N4P3 RNU6-787P-201ENST00000384032 107 ntBASIC-3.56□□□□□ -2.98
HDDC3Q8N4P3 Y_RNA.545-201ENST00000384652 105 ntBASIC-3.56□□□□□ -2.98
HDDC3Q8N4P3 RNU6-530P-201ENST00000391180 107 ntBASIC-3.56□□□□□ -2.98
HDDC3Q8N4P3 SNORD30.1-201ENST00000391309 70 ntBASIC-3.57□□□□□ -2.98
HDDC3Q8N4P3 MIR581-201ENST00000384895 96 ntBASIC-3.58□□□□□ -2.98
HDDC3Q8N4P3 RNU6-871P-201ENST00000516122 100 ntBASIC-3.62□□□□□ -2.99
HDDC3Q8N4P3 SNORA40.16-201ENST00000517238 121 ntBASIC-3.62□□□□□ -2.99
HDDC3Q8N4P3 FTX_4.1-201ENST00000616291 147 ntBASIC-3.63□□□□□ -2.99
HDDC3Q8N4P3 AC097484.2-201ENST00000509147 251 ntBASIC-3.64□□□□□ -2.99
HDDC3Q8N4P3 RNU6-803P-201ENST00000516034 102 ntBASIC-3.64□□□□□ -2.99
HDDC3Q8N4P3 AL451105.1-201ENST00000450005 189 ntBASIC-3.65□□□□□ -2.99
HDDC3Q8N4P3 RNU6-406P-201ENST00000516470 107 ntBASIC-3.67□□□□□ -3
HDDC3Q8N4P3 MIR4748-201ENST00000578076 82 ntBASIC-3.67□□□□□ -3
HDDC3Q8N4P3 MIR4426-201ENST00000640330 63 ntBASIC-3.67□□□□□ -3
HDDC3Q8N4P3 Y_RNA.369-201ENST00000365568 117 ntBASIC-3.68□□□□□ -3
HDDC3Q8N4P3 MIR5582-201ENST00000579697 68 ntBASIC-3.68□□□□□ -3
HDDC3Q8N4P3 RNU6-940P-201ENST00000363433 104 ntBASIC-3.69□□□□□ -3
HDDC3Q8N4P3 AC062037.1-201ENST00000605302 128 ntBASIC-3.69□□□□□ -3
HDDC3Q8N4P3 RNU6-230P-201ENST00000362457 104 ntBASIC-3.7□□□□□ -3
HDDC3Q8N4P3 Y_RNA.349-201ENST00000365406 102 ntBASIC-3.7□□□□□ -3
HDDC3Q8N4P3 MIR379-201ENST00000362218 67 ntBASIC-3.71□□□□□ -3
HDDC3Q8N4P3 Y_RNA.647-201ENST00000459194 112 ntBASIC-3.71□□□□□ -3
HDDC3Q8N4P3 Y_RNA.640-201ENST00000459296 112 ntBASIC-3.71□□□□□ -3
HDDC3Q8N4P3 Y_RNA.803-201ENST00000614432 112 ntBASIC-3.71□□□□□ -3
HDDC3Q8N4P3 Y_RNA.815-201ENST00000616655 112 ntBASIC-3.71□□□□□ -3
HDDC3Q8N4P3 Y_RNA.795-201ENST00000619475 112 ntBASIC-3.71□□□□□ -3
HDDC3Q8N4P3 Y_RNA.827-201ENST00000638104 112 ntBASIC-3.71□□□□□ -3
HDDC3Q8N4P3 MIR3202-2-201ENST00000635980 79 ntBASIC-3.72□□□□□ -3
HDDC3Q8N4P3 MIR4511-201ENST00000582784 87 ntBASIC-3.73□□□□□ -3.01
HDDC3Q8N4P3 AC103706.3-201ENST00000636297 85 ntBASIC-3.73□□□□□ -3.01
HDDC3Q8N4P3 RNU6-300P-201ENST00000459080 104 ntBASIC-3.74□□□□□ -3.01
HDDC3Q8N4P3 RNU6-176P-201ENST00000517196 105 ntBASIC-3.74□□□□□ -3.01
HDDC3Q8N4P3 MIR4679-1-201ENST00000637619 75 ntBASIC-3.74□□□□□ -3.01
HDDC3Q8N4P3 U6.111-201ENST00000636093 83 ntBASIC-3.76□□□□□ -3.01
HDDC3Q8N4P3 Y_RNA.129-201ENST00000363392 110 ntBASIC-3.78□□□□□ -3.01
HDDC3Q8N4P3 RNU6-539P-201ENST00000516665 103 ntBASIC-3.78□□□□□ -3.01
HDDC3Q8N4P3 RNU6-590P-201ENST00000365039 107 ntBASIC-3.8□□□□□ -3.02
HDDC3Q8N4P3 MIR3938-201ENST00000582157 103 ntBASIC-3.8□□□□□ -3.02
HDDC3Q8N4P3 RNY4P9-201ENST00000363194 97 ntBASIC-3.81□□□□□ -3.02
HDDC3Q8N4P3 Y_RNA.658-201ENST00000515990 97 ntBASIC-3.82□□□□□ -3.02
HDDC3Q8N4P3 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-3.82□□□□□ -3.02
HDDC3Q8N4P3 Y_RNA.81-201ENST00000362997 102 ntBASIC-3.83□□□□□ -3.02
HDDC3Q8N4P3 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-3.83□□□□□ -3.02
HDDC3Q8N4P3 Y_RNA.397-201ENST00000383950 98 ntBASIC-3.84□□□□□ -3.02
HDDC3Q8N4P3 RNU6-1324P-201ENST00000384222 107 ntBASIC-3.84□□□□□ -3.02
HDDC3Q8N4P3 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-3.84□□□□□ -3.02
HDDC3Q8N4P3 U2.22-201ENST00000636441 106 ntBASIC-3.85□□□□□ -3.03
HDDC3Q8N4P3 RNU6-912P-201ENST00000363800 104 ntBASIC-3.87□□□□□ -3.03
HDDC3Q8N4P3 RNU6-857P-201ENST00000515893 110 ntBASIC-3.87□□□□□ -3.03
HDDC3Q8N4P3 RNU6-419P-201ENST00000517030 63 ntBASIC-3.87□□□□□ -3.03
HDDC3Q8N4P3 RNU6-1124P-201ENST00000384169 107 ntBASIC-3.88□□□□□ -3.03
HDDC3Q8N4P3 MIR548AJ2-201ENST00000408539 92 ntBASIC-3.91□□□□□ -3.04
HDDC3Q8N4P3 RNU6-1047P-201ENST00000364418 107 ntBASIC-3.92□□□□□ -3.04
HDDC3Q8N4P3 SNORD113-3-201ENST00000364830 72 ntBASIC-3.92□□□□□ -3.04
HDDC3Q8N4P3 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-3.92□□□□□ -3.04
HDDC3Q8N4P3 MIR1255A-201ENST00000408338 113 ntBASIC-3.93□□□□□ -3.04
HDDC3Q8N4P3 RNU6-279P-201ENST00000391297 101 ntBASIC-3.94□□□□□ -3.04
HDDC3Q8N4P3 RNU6-68P-201ENST00000516576 104 ntBASIC-3.94□□□□□ -3.04
HDDC3Q8N4P3 RNU6-800P-201ENST00000384473 103 ntBASIC-3.96□□□□□ -3.04
HDDC3Q8N4P3 SNORD73B-201ENST00000364394 72 ntBASIC-3.99□□□□□ -3.05
HDDC3Q8N4P3 RNU6-573P-201ENST00000383938 106 ntBASIC-3.99□□□□□ -3.05
HDDC3Q8N4P3 Y_RNA.320-201ENST00000365144 102 ntBASIC-4□□□□□ -3.05
HDDC3Q8N4P3 SNORA26.2-201ENST00000390922 122 ntBASIC-4.01□□□□□ -3.05
HDDC3Q8N4P3 RNU6-742P-201ENST00000365289 107 ntBASIC-4.02□□□□□ -3.05
HDDC3Q8N4P3 Y_RNA.519-201ENST00000384553 102 ntBASIC-4.02□□□□□ -3.05
HDDC3Q8N4P3 RNU6-141P-201ENST00000410499 105 ntBASIC-4.03□□□□□ -3.05
HDDC3Q8N4P3 AC110620.1-201ENST00000416042 228 ntBASIC-4.05□□□□□ -3.06
HDDC3Q8N4P3 RNA5SP170-201ENST00000517150 101 ntBASIC-4.05□□□□□ -3.06
HDDC3Q8N4P3 RNY4P29-201ENST00000410801 97 ntBASIC-4.06□□□□□ -3.06
HDDC3Q8N4P3 Y_RNA.513-201ENST00000384522 100 ntBASIC-4.07□□□□□ -3.06
HDDC3Q8N4P3 SNX3P1Y-201ENST00000615757 176 ntBASIC-4.07□□□□□ -3.06
HDDC3Q8N4P3 Y_RNA.565-201ENST00000384719 101 ntBASIC-4.09□□□□□ -3.06
HDDC3Q8N4P3 MIR1254-1-201ENST00000408257 97 ntBASIC-4.1□□□□□ -3.07
HDDC3Q8N4P3 MIRLET7A2-201ENST00000362105 72 ntBASIC-4.13□□□□□ -3.07
HDDC3Q8N4P3 RNU6-822P-201ENST00000362707 106 ntBASIC-4.13□□□□□ -3.07
HDDC3Q8N4P3 MIR548X-201ENST00000580069 75 ntBASIC-4.13□□□□□ -3.07
HDDC3Q8N4P3 RNU6-345P-201ENST00000517001 107 ntBASIC-4.15□□□□□ -3.07
HDDC3Q8N4P3 Y_RNA.388-201ENST00000383919 113 ntBASIC-4.16□□□□□ -3.08
Retrieved 100 of 98,524 protein–RNA pairs in 182.3 ms