Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RNU6-634P-201ENST00000459134 106 ntBASIC-3.47□□□□□ -2.96
HDDC3Q8N4P3 snoU13.10-201ENST00000459301 103 ntBASIC-3.47□□□□□ -2.96
HDDC3Q8N4P3 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-3.47□□□□□ -2.96
HDDC3Q8N4P3 SNORA40B-201ENST00000385573 128 ntBASIC-3.48□□□□□ -2.97
HDDC3Q8N4P3 AL603908.1-201ENST00000406098 201 ntBASIC-3.48□□□□□ -2.97
HDDC3Q8N4P3 Y_RNA.694-201ENST00000516677 117 ntBASIC-3.48□□□□□ -2.97
HDDC3Q8N4P3 Y_RNA.211-201ENST00000364164 101 ntBASIC-3.5□□□□□ -2.97
HDDC3Q8N4P3 SNORA25.5-201ENST00000363782 126 ntBASIC-3.51□□□□□ -2.97
HDDC3Q8N4P3 SNORA17.4-201ENST00000391287 132 ntBASIC-3.51□□□□□ -2.97
HDDC3Q8N4P3 RNU7-119P-201ENST00000459279 63 ntBASIC-3.51□□□□□ -2.97
HDDC3Q8N4P3 SNORD45.2-201ENST00000363552 72 ntBASIC-3.52□□□□□ -2.97
HDDC3Q8N4P3 RNU6-1306P-201ENST00000365219 99 ntBASIC-3.52□□□□□ -2.97
HDDC3Q8N4P3 RNU6-122P-201ENST00000516818 107 ntBASIC-3.52□□□□□ -2.97
HDDC3Q8N4P3 MIR466-201ENST00000580653 84 ntBASIC-3.52□□□□□ -2.97
HDDC3Q8N4P3 MIR548W-201ENST00000581970 74 ntBASIC-3.52□□□□□ -2.97
HDDC3Q8N4P3 SNORA25.4-201ENST00000363666 124 ntBASIC-3.53□□□□□ -2.97
HDDC3Q8N4P3 RNU6-820P-201ENST00000384273 107 ntBASIC-3.53□□□□□ -2.97
HDDC3Q8N4P3 MIR548N-201ENST00000408742 75 ntBASIC-3.53□□□□□ -2.97
HDDC3Q8N4P3 RNU6-153P-201ENST00000364422 104 ntBASIC-3.54□□□□□ -2.98
HDDC3Q8N4P3 RNU6-1296P-201ENST00000383879 107 ntBASIC-3.54□□□□□ -2.98
HDDC3Q8N4P3 Y_RNA.501-201ENST00000384467 103 ntBASIC-3.54□□□□□ -2.98
HDDC3Q8N4P3 RNU6-361P-201ENST00000364454 107 ntBASIC-3.56□□□□□ -2.98
HDDC3Q8N4P3 RNU6-787P-201ENST00000384032 107 ntBASIC-3.56□□□□□ -2.98
HDDC3Q8N4P3 Y_RNA.545-201ENST00000384652 105 ntBASIC-3.56□□□□□ -2.98
HDDC3Q8N4P3 RNU6-530P-201ENST00000391180 107 ntBASIC-3.56□□□□□ -2.98
HDDC3Q8N4P3 SNORD30.1-201ENST00000391309 70 ntBASIC-3.57□□□□□ -2.98
HDDC3Q8N4P3 MIR581-201ENST00000384895 96 ntBASIC-3.58□□□□□ -2.98
HDDC3Q8N4P3 RNU6-871P-201ENST00000516122 100 ntBASIC-3.62□□□□□ -2.99
HDDC3Q8N4P3 SNORA40.16-201ENST00000517238 121 ntBASIC-3.62□□□□□ -2.99
HDDC3Q8N4P3 FTX_4.1-201ENST00000616291 147 ntBASIC-3.63□□□□□ -2.99
HDDC3Q8N4P3 AC097484.2-201ENST00000509147 251 ntBASIC-3.64□□□□□ -2.99
HDDC3Q8N4P3 RNU6-803P-201ENST00000516034 102 ntBASIC-3.64□□□□□ -2.99
HDDC3Q8N4P3 AL451105.1-201ENST00000450005 189 ntBASIC-3.65□□□□□ -2.99
HDDC3Q8N4P3 RNU6-406P-201ENST00000516470 107 ntBASIC-3.67□□□□□ -3
HDDC3Q8N4P3 MIR4748-201ENST00000578076 82 ntBASIC-3.67□□□□□ -3
HDDC3Q8N4P3 MIR4426-201ENST00000640330 63 ntBASIC-3.67□□□□□ -3
HDDC3Q8N4P3 Y_RNA.369-201ENST00000365568 117 ntBASIC-3.68□□□□□ -3
HDDC3Q8N4P3 MIR5582-201ENST00000579697 68 ntBASIC-3.68□□□□□ -3
HDDC3Q8N4P3 RNU6-940P-201ENST00000363433 104 ntBASIC-3.69□□□□□ -3
HDDC3Q8N4P3 AC062037.1-201ENST00000605302 128 ntBASIC-3.69□□□□□ -3
HDDC3Q8N4P3 RNU6-230P-201ENST00000362457 104 ntBASIC-3.7□□□□□ -3
HDDC3Q8N4P3 Y_RNA.349-201ENST00000365406 102 ntBASIC-3.7□□□□□ -3
HDDC3Q8N4P3 MIR379-201ENST00000362218 67 ntBASIC-3.71□□□□□ -3
HDDC3Q8N4P3 Y_RNA.647-201ENST00000459194 112 ntBASIC-3.71□□□□□ -3
HDDC3Q8N4P3 Y_RNA.640-201ENST00000459296 112 ntBASIC-3.71□□□□□ -3
HDDC3Q8N4P3 Y_RNA.803-201ENST00000614432 112 ntBASIC-3.71□□□□□ -3
HDDC3Q8N4P3 Y_RNA.815-201ENST00000616655 112 ntBASIC-3.71□□□□□ -3
HDDC3Q8N4P3 Y_RNA.795-201ENST00000619475 112 ntBASIC-3.71□□□□□ -3
HDDC3Q8N4P3 Y_RNA.827-201ENST00000638104 112 ntBASIC-3.71□□□□□ -3
HDDC3Q8N4P3 MIR3202-2-201ENST00000635980 79 ntBASIC-3.72□□□□□ -3
HDDC3Q8N4P3 MIR4511-201ENST00000582784 87 ntBASIC-3.73□□□□□ -3.01
HDDC3Q8N4P3 AC103706.3-201ENST00000636297 85 ntBASIC-3.73□□□□□ -3.01
HDDC3Q8N4P3 RNU6-300P-201ENST00000459080 104 ntBASIC-3.74□□□□□ -3.01
HDDC3Q8N4P3 RNU6-176P-201ENST00000517196 105 ntBASIC-3.74□□□□□ -3.01
HDDC3Q8N4P3 MIR4679-1-201ENST00000637619 75 ntBASIC-3.74□□□□□ -3.01
HDDC3Q8N4P3 U6.111-201ENST00000636093 83 ntBASIC-3.76□□□□□ -3.01
HDDC3Q8N4P3 Y_RNA.129-201ENST00000363392 110 ntBASIC-3.78□□□□□ -3.01
HDDC3Q8N4P3 RNU6-539P-201ENST00000516665 103 ntBASIC-3.78□□□□□ -3.01
HDDC3Q8N4P3 RNU6-590P-201ENST00000365039 107 ntBASIC-3.8□□□□□ -3.02
HDDC3Q8N4P3 MIR3938-201ENST00000582157 103 ntBASIC-3.8□□□□□ -3.02
HDDC3Q8N4P3 RNY4P9-201ENST00000363194 97 ntBASIC-3.81□□□□□ -3.02
HDDC3Q8N4P3 Y_RNA.658-201ENST00000515990 97 ntBASIC-3.82□□□□□ -3.02
HDDC3Q8N4P3 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-3.82□□□□□ -3.02
HDDC3Q8N4P3 Y_RNA.81-201ENST00000362997 102 ntBASIC-3.83□□□□□ -3.02
HDDC3Q8N4P3 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-3.83□□□□□ -3.02
HDDC3Q8N4P3 Y_RNA.397-201ENST00000383950 98 ntBASIC-3.84□□□□□ -3.02
HDDC3Q8N4P3 RNU6-1324P-201ENST00000384222 107 ntBASIC-3.84□□□□□ -3.02
HDDC3Q8N4P3 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-3.84□□□□□ -3.02
HDDC3Q8N4P3 U2.22-201ENST00000636441 106 ntBASIC-3.85□□□□□ -3.03
HDDC3Q8N4P3 RNU6-912P-201ENST00000363800 104 ntBASIC-3.87□□□□□ -3.03
HDDC3Q8N4P3 RNU6-857P-201ENST00000515893 110 ntBASIC-3.87□□□□□ -3.03
HDDC3Q8N4P3 RNU6-419P-201ENST00000517030 63 ntBASIC-3.87□□□□□ -3.03
HDDC3Q8N4P3 RNU6-1124P-201ENST00000384169 107 ntBASIC-3.88□□□□□ -3.03
HDDC3Q8N4P3 MIR548AJ2-201ENST00000408539 92 ntBASIC-3.91□□□□□ -3.04
HDDC3Q8N4P3 RNU6-1047P-201ENST00000364418 107 ntBASIC-3.92□□□□□ -3.04
HDDC3Q8N4P3 SNORD113-3-201ENST00000364830 72 ntBASIC-3.92□□□□□ -3.04
HDDC3Q8N4P3 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-3.92□□□□□ -3.04
HDDC3Q8N4P3 MIR1255A-201ENST00000408338 113 ntBASIC-3.93□□□□□ -3.04
HDDC3Q8N4P3 RNU6-279P-201ENST00000391297 101 ntBASIC-3.94□□□□□ -3.04
HDDC3Q8N4P3 RNU6-68P-201ENST00000516576 104 ntBASIC-3.94□□□□□ -3.04
HDDC3Q8N4P3 RNU6-800P-201ENST00000384473 103 ntBASIC-3.96□□□□□ -3.04
HDDC3Q8N4P3 SNORD73B-201ENST00000364394 72 ntBASIC-3.99□□□□□ -3.05
HDDC3Q8N4P3 RNU6-573P-201ENST00000383938 106 ntBASIC-3.99□□□□□ -3.05
HDDC3Q8N4P3 Y_RNA.320-201ENST00000365144 102 ntBASIC-4□□□□□ -3.05
HDDC3Q8N4P3 SNORA26.2-201ENST00000390922 122 ntBASIC-4.01□□□□□ -3.05
HDDC3Q8N4P3 RNU6-742P-201ENST00000365289 107 ntBASIC-4.02□□□□□ -3.05
HDDC3Q8N4P3 Y_RNA.519-201ENST00000384553 102 ntBASIC-4.02□□□□□ -3.05
HDDC3Q8N4P3 RNU6-141P-201ENST00000410499 105 ntBASIC-4.03□□□□□ -3.05
HDDC3Q8N4P3 AC110620.1-201ENST00000416042 228 ntBASIC-4.05□□□□□ -3.06
HDDC3Q8N4P3 RNA5SP170-201ENST00000517150 101 ntBASIC-4.05□□□□□ -3.06
HDDC3Q8N4P3 RNY4P29-201ENST00000410801 97 ntBASIC-4.06□□□□□ -3.06
HDDC3Q8N4P3 Y_RNA.513-201ENST00000384522 100 ntBASIC-4.07□□□□□ -3.06
HDDC3Q8N4P3 SNX3P1Y-201ENST00000615757 176 ntBASIC-4.07□□□□□ -3.06
HDDC3Q8N4P3 Y_RNA.565-201ENST00000384719 101 ntBASIC-4.09□□□□□ -3.06
HDDC3Q8N4P3 MIR1254-1-201ENST00000408257 97 ntBASIC-4.1□□□□□ -3.07
HDDC3Q8N4P3 MIRLET7A2-201ENST00000362105 72 ntBASIC-4.13□□□□□ -3.07
HDDC3Q8N4P3 RNU6-822P-201ENST00000362707 106 ntBASIC-4.13□□□□□ -3.07
HDDC3Q8N4P3 MIR548X-201ENST00000580069 75 ntBASIC-4.13□□□□□ -3.07
HDDC3Q8N4P3 RNU6-345P-201ENST00000517001 107 ntBASIC-4.15□□□□□ -3.07
HDDC3Q8N4P3 Y_RNA.388-201ENST00000383919 113 ntBASIC-4.16□□□□□ -3.08
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms