Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SNORD60-201ENST00000383903 83 ntBASIC-2.42□□□□□ -2.8
MSH6P52701 SNORD116.2-201ENST00000391251 93 ntBASIC-2.42□□□□□ -2.8
MSH6P52701 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-2.42□□□□□ -2.8
MSH6P52701 SNORA25.5-201ENST00000363782 126 ntBASIC-2.43□□□□□ -2.8
MSH6P52701 RNU6-1306P-201ENST00000365219 99 ntBASIC-2.43□□□□□ -2.8
MSH6P52701 RNU6-1206P-201ENST00000516339 103 ntBASIC-2.44□□□□□ -2.8
MSH6P52701 RNU6-122P-201ENST00000516818 107 ntBASIC-2.44□□□□□ -2.8
MSH6P52701 MIR5582-201ENST00000579697 68 ntBASIC-2.44□□□□□ -2.8
MSH6P52701 SNORA40B-201ENST00000385573 128 ntBASIC-2.46□□□□□ -2.8
MSH6P52701 MIR581-201ENST00000384895 96 ntBASIC-2.47□□□□□ -2.8
MSH6P52701 SNORA25.4-201ENST00000363666 124 ntBASIC-2.48□□□□□ -2.81
MSH6P52701 RNU6-361P-201ENST00000364454 107 ntBASIC-2.48□□□□□ -2.81
MSH6P52701 MIR548N-201ENST00000408742 75 ntBASIC-2.48□□□□□ -2.81
MSH6P52701 MIR548W-201ENST00000581970 74 ntBASIC-2.48□□□□□ -2.81
MSH6P52701 AC062037.1-201ENST00000605302 128 ntBASIC-2.48□□□□□ -2.81
MSH6P52701 MIR202-201ENST00000362219 110 ntBASIC-2.49□□□□□ -2.81
MSH6P52701 RNU6-649P-201ENST00000384463 107 ntBASIC-2.49□□□□□ -2.81
MSH6P52701 snoU13.10-201ENST00000459301 103 ntBASIC-2.49□□□□□ -2.81
MSH6P52701 MIR466-201ENST00000580653 84 ntBASIC-2.49□□□□□ -2.81
MSH6P52701 SNORA17.4-201ENST00000391287 132 ntBASIC-2.5□□□□□ -2.81
MSH6P52701 RNU7-119P-201ENST00000459279 63 ntBASIC-2.5□□□□□ -2.81
MSH6P52701 RNU6-1079P-201ENST00000362861 110 ntBASIC-2.51□□□□□ -2.81
MSH6P52701 SNORD30.1-201ENST00000391309 70 ntBASIC-2.52□□□□□ -2.81
MSH6P52701 SNORA40.16-201ENST00000517238 121 ntBASIC-2.52□□□□□ -2.81
MSH6P52701 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-2.52□□□□□ -2.81
MSH6P52701 MIR4748-201ENST00000578076 82 ntBASIC-2.53□□□□□ -2.81
MSH6P52701 SNORD45.2-201ENST00000363552 72 ntBASIC-2.54□□□□□ -2.82
MSH6P52701 U2.22-201ENST00000636441 106 ntBASIC-2.54□□□□□ -2.82
MSH6P52701 Y_RNA.545-201ENST00000384652 105 ntBASIC-2.55□□□□□ -2.82
MSH6P52701 RNU6-1121P-201ENST00000516802 109 ntBASIC-2.55□□□□□ -2.82
MSH6P52701 RNU6-871P-201ENST00000516122 100 ntBASIC-2.56□□□□□ -2.82
MSH6P52701 MIR3202-2-201ENST00000635980 79 ntBASIC-2.56□□□□□ -2.82
MSH6P52701 RNU6-530P-201ENST00000391180 107 ntBASIC-2.57□□□□□ -2.82
MSH6P52701 MIR4511-201ENST00000582784 87 ntBASIC-2.57□□□□□ -2.82
MSH6P52701 RNU6-940P-201ENST00000363433 104 ntBASIC-2.58□□□□□ -2.82
MSH6P52701 RNU6-1296P-201ENST00000383879 107 ntBASIC-2.59□□□□□ -2.82
MSH6P52701 AL451105.1-201ENST00000450005 189 ntBASIC-2.59□□□□□ -2.82
MSH6P52701 AC103706.3-201ENST00000636297 85 ntBASIC-2.59□□□□□ -2.82
MSH6P52701 Y_RNA.81-201ENST00000362997 102 ntBASIC-2.6□□□□□ -2.83
MSH6P52701 Y_RNA.501-201ENST00000384467 103 ntBASIC-2.6□□□□□ -2.83
MSH6P52701 Y_RNA.566-201ENST00000384735 101 ntBASIC-2.61□□□□□ -2.83
MSH6P52701 U6.111-201ENST00000636093 83 ntBASIC-2.61□□□□□ -2.83
MSH6P52701 RNU6-539P-201ENST00000516665 103 ntBASIC-2.62□□□□□ -2.83
MSH6P52701 MIR3938-201ENST00000582157 103 ntBASIC-2.63□□□□□ -2.83
MSH6P52701 AC097484.2-201ENST00000509147 251 ntBASIC-2.64□□□□□ -2.83
MSH6P52701 RNU6-857P-201ENST00000515893 110 ntBASIC-2.64□□□□□ -2.83
MSH6P52701 MIR379-201ENST00000362218 67 ntBASIC-2.65□□□□□ -2.83
MSH6P52701 RNU6-230P-201ENST00000362457 104 ntBASIC-2.65□□□□□ -2.83
MSH6P52701 RNU6-1124P-201ENST00000384169 107 ntBASIC-2.65□□□□□ -2.83
MSH6P52701 RNU6-279P-201ENST00000391297 101 ntBASIC-2.65□□□□□ -2.83
MSH6P52701 MIR1255A-201ENST00000408338 113 ntBASIC-2.65□□□□□ -2.83
MSH6P52701 SNORD73B-201ENST00000364394 72 ntBASIC-2.66□□□□□ -2.84
MSH6P52701 Y_RNA.349-201ENST00000365406 102 ntBASIC-2.66□□□□□ -2.84
MSH6P52701 RNU6-573P-201ENST00000383938 106 ntBASIC-2.66□□□□□ -2.84
MSH6P52701 FTX_4.1-201ENST00000616291 147 ntBASIC-2.66□□□□□ -2.84
MSH6P52701 MIR4426-201ENST00000640330 63 ntBASIC-2.66□□□□□ -2.84
MSH6P52701 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-2.67□□□□□ -2.84
MSH6P52701 RNU6-176P-201ENST00000517196 105 ntBASIC-2.67□□□□□ -2.84
MSH6P52701 RNU6-419P-201ENST00000517030 63 ntBASIC-2.68□□□□□ -2.84
MSH6P52701 Y_RNA.397-201ENST00000383950 98 ntBASIC-2.69□□□□□ -2.84
MSH6P52701 MIR4679-1-201ENST00000637619 75 ntBASIC-2.69□□□□□ -2.84
MSH6P52701 RNY4P9-201ENST00000363194 97 ntBASIC-2.7□□□□□ -2.84
MSH6P52701 RNU6-300P-201ENST00000459080 104 ntBASIC-2.71□□□□□ -2.84
MSH6P52701 Y_RNA.129-201ENST00000363392 110 ntBASIC-2.72□□□□□ -2.84
MSH6P52701 RNU6-590P-201ENST00000365039 107 ntBASIC-2.72□□□□□ -2.84
MSH6P52701 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-2.72□□□□□ -2.84
MSH6P52701 Y_RNA.647-201ENST00000459194 112 ntBASIC-2.72□□□□□ -2.84
MSH6P52701 Y_RNA.640-201ENST00000459296 112 ntBASIC-2.72□□□□□ -2.84
MSH6P52701 RNU6-68P-201ENST00000516576 104 ntBASIC-2.72□□□□□ -2.84
MSH6P52701 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-2.72□□□□□ -2.84
MSH6P52701 Y_RNA.803-201ENST00000614432 112 ntBASIC-2.72□□□□□ -2.84
MSH6P52701 Y_RNA.815-201ENST00000616655 112 ntBASIC-2.72□□□□□ -2.84
MSH6P52701 Y_RNA.795-201ENST00000619475 112 ntBASIC-2.72□□□□□ -2.84
MSH6P52701 Y_RNA.827-201ENST00000638104 112 ntBASIC-2.72□□□□□ -2.84
MSH6P52701 RNA5SP170-201ENST00000517150 101 ntBASIC-2.73□□□□□ -2.85
MSH6P52701 RNU6-800P-201ENST00000384473 103 ntBASIC-2.74□□□□□ -2.85
MSH6P52701 RNY4P29-201ENST00000410801 97 ntBASIC-2.74□□□□□ -2.85
MSH6P52701 RNU6-803P-201ENST00000516034 102 ntBASIC-2.74□□□□□ -2.85
MSH6P52701 RNU6-1298P-201ENST00000362456 101 ntBASIC-2.74□□□□□ -2.85
MSH6P52701 SNORA26.2-201ENST00000390922 122 ntBASIC-2.74□□□□□ -2.85
MSH6P52701 RNU6-912P-201ENST00000363800 104 ntBASIC-2.75□□□□□ -2.85
MSH6P52701 Y_RNA.388-201ENST00000383919 113 ntBASIC-2.75□□□□□ -2.85
MSH6P52701 RNU6-1324P-201ENST00000384222 107 ntBASIC-2.75□□□□□ -2.85
MSH6P52701 AC110620.1-201ENST00000416042 228 ntBASIC-2.75□□□□□ -2.85
MSH6P52701 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-2.75□□□□□ -2.85
MSH6P52701 Y_RNA.513-201ENST00000384522 100 ntBASIC-2.76□□□□□ -2.85
MSH6P52701 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.77□□□□□ -2.85
MSH6P52701 MIR548AJ2-201ENST00000408539 92 ntBASIC-2.78□□□□□ -2.85
MSH6P52701 RNU6-742P-201ENST00000365289 107 ntBASIC-2.81□□□□□ -2.86
MSH6P52701 MIRLET7A2-201ENST00000362105 72 ntBASIC-2.82□□□□□ -2.86
MSH6P52701 SNORD78.1-201ENST00000390866 65 ntBASIC-2.82□□□□□ -2.86
MSH6P52701 RNU6-141P-201ENST00000410499 105 ntBASIC-2.82□□□□□ -2.86
MSH6P52701 SNORD113-3-201ENST00000364830 72 ntBASIC-2.83□□□□□ -2.86
MSH6P52701 Y_RNA.565-201ENST00000384719 101 ntBASIC-2.84□□□□□ -2.86
MSH6P52701 Y_RNA.658-201ENST00000515990 97 ntBASIC-2.84□□□□□ -2.86
MSH6P52701 SNX3P1Y-201ENST00000615757 176 ntBASIC-2.85□□□□□ -2.87
MSH6P52701 MIR4662A-201ENST00000637499 67 ntBASIC-2.86□□□□□ -2.87
MSH6P52701 MIR548X-201ENST00000580069 75 ntBASIC-2.87□□□□□ -2.87
MSH6P52701 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-2.87□□□□□ -2.87
MSH6P52701 Y_RNA.519-201ENST00000384553 102 ntBASIC-2.87□□□□□ -2.87
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms