Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SNORD113-3-201ENST00000364830 72 ntBASIC-1.82□□□□□ -2.7
CDX1P47902 RNU6-828P-201ENST00000364876 107 ntBASIC-1.82□□□□□ -2.7
CDX1P47902 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.82□□□□□ -2.7
CDX1P47902 SNORA17.4-201ENST00000391287 132 ntBASIC-1.82□□□□□ -2.7
CDX1P47902 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.83□□□□□ -2.7
CDX1P47902 RNU6-411P-201ENST00000384451 107 ntBASIC-1.83□□□□□ -2.7
CDX1P47902 RNU6-141P-201ENST00000410499 105 ntBASIC-1.83□□□□□ -2.7
CDX1P47902 RNU6-687P-201ENST00000516443 89 ntBASIC-1.83□□□□□ -2.7
CDX1P47902 RNU6-542P-201ENST00000516405 103 ntBASIC-1.84□□□□□ -2.7
CDX1P47902 RNU6-361P-201ENST00000364454 107 ntBASIC-1.85□□□□□ -2.71
CDX1P47902 RNY4P7-201ENST00000364600 96 ntBASIC-1.85□□□□□ -2.71
CDX1P47902 RNU6-787P-201ENST00000384032 107 ntBASIC-1.85□□□□□ -2.71
CDX1P47902 U7.4-201ENST00000614961 63 ntBASIC-1.85□□□□□ -2.71
CDX1P47902 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.85□□□□□ -2.71
CDX1P47902 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-1.85□□□□□ -2.71
CDX1P47902 RNU6-810P-201ENST00000364001 107 ntBASIC-1.86□□□□□ -2.71
CDX1P47902 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.86□□□□□ -2.71
CDX1P47902 AC062037.1-201ENST00000605302 128 ntBASIC-1.86□□□□□ -2.71
CDX1P47902 MIR7110-201ENST00000612638 86 ntBASIC-1.86□□□□□ -2.71
CDX1P47902 Y_RNA.519-201ENST00000384553 102 ntBASIC-1.87□□□□□ -2.71
CDX1P47902 RNU6-912P-201ENST00000363800 104 ntBASIC-1.88□□□□□ -2.71
CDX1P47902 SNORD54-201ENST00000459159 67 ntBASIC-1.88□□□□□ -2.71
CDX1P47902 RNU6-92P-201ENST00000605893 104 ntBASIC-1.88□□□□□ -2.71
CDX1P47902 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.89□□□□□ -2.71
CDX1P47902 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.89□□□□□ -2.71
CDX1P47902 RNU6-530P-201ENST00000391180 107 ntBASIC-1.89□□□□□ -2.71
CDX1P47902 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.89□□□□□ -2.71
CDX1P47902 RNU6-68P-201ENST00000516576 104 ntBASIC-1.89□□□□□ -2.71
CDX1P47902 RNU6-231P-201ENST00000517122 103 ntBASIC-1.89□□□□□ -2.71
CDX1P47902 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.89□□□□□ -2.71
CDX1P47902 SNX3P1Y-201ENST00000615757 176 ntBASIC-1.89□□□□□ -2.71
CDX1P47902 MIR379-201ENST00000362218 67 ntBASIC-1.9□□□□□ -2.71
CDX1P47902 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.9□□□□□ -2.71
CDX1P47902 SNORD60.1-201ENST00000362451 73 ntBASIC-1.91□□□□□ -2.72
CDX1P47902 SNORD116.2-201ENST00000391251 93 ntBASIC-1.91□□□□□ -2.72
CDX1P47902 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.92□□□□□ -2.72
CDX1P47902 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.92□□□□□ -2.72
CDX1P47902 MIR4426-201ENST00000640330 63 ntBASIC-1.92□□□□□ -2.72
CDX1P47902 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.93□□□□□ -2.72
CDX1P47902 SNORA40B-201ENST00000385573 128 ntBASIC-1.93□□□□□ -2.72
CDX1P47902 RNU6-230P-201ENST00000362457 104 ntBASIC-1.94□□□□□ -2.72
CDX1P47902 RNA5SP170-201ENST00000517150 101 ntBASIC-1.94□□□□□ -2.72
CDX1P47902 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.95□□□□□ -2.72
CDX1P47902 RNU6-590P-201ENST00000365039 107 ntBASIC-1.96□□□□□ -2.72
CDX1P47902 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.96□□□□□ -2.72
CDX1P47902 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.96□□□□□ -2.72
CDX1P47902 MIR1254-1-201ENST00000408257 97 ntBASIC-1.96□□□□□ -2.72
CDX1P47902 RNU6-300P-201ENST00000459080 104 ntBASIC-1.96□□□□□ -2.72
CDX1P47902 MIR3202-2-201ENST00000635980 79 ntBASIC-1.96□□□□□ -2.72
CDX1P47902 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.97□□□□□ -2.72
CDX1P47902 AL451105.1-201ENST00000450005 189 ntBASIC-1.97□□□□□ -2.72
CDX1P47902 SNORD45.2-201ENST00000363552 72 ntBASIC-1.98□□□□□ -2.73
CDX1P47902 RNU6-663P-201ENST00000391105 106 ntBASIC-1.98□□□□□ -2.73
CDX1P47902 RNU6-634P-201ENST00000459134 106 ntBASIC-1.98□□□□□ -2.73
CDX1P47902 SNORA40.16-201ENST00000517238 121 ntBASIC-1.98□□□□□ -2.73
CDX1P47902 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.99□□□□□ -2.73
CDX1P47902 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.99□□□□□ -2.73
CDX1P47902 SNORD73B-201ENST00000364394 72 ntBASIC-1.99□□□□□ -2.73
CDX1P47902 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.99□□□□□ -2.73
CDX1P47902 RNU6-176P-201ENST00000517196 105 ntBASIC-2□□□□□ -2.73
CDX1P47902 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-2□□□□□ -2.73
CDX1P47902 Y_RNA.53-201ENST00000362765 102 ntBASIC-2.02□□□□□ -2.73
CDX1P47902 Y_RNA.545-201ENST00000384652 105 ntBASIC-2.02□□□□□ -2.73
CDX1P47902 RNA5SP93-201ENST00000362525 114 ntBASIC-2.03□□□□□ -2.73
CDX1P47902 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.03□□□□□ -2.73
CDX1P47902 RNU6-345P-201ENST00000517001 107 ntBASIC-2.03□□□□□ -2.73
CDX1P47902 Y_RNA.63-201ENST00000362841 102 ntBASIC-2.04□□□□□ -2.74
CDX1P47902 RNU6-573P-201ENST00000383938 106 ntBASIC-2.04□□□□□ -2.74
CDX1P47902 RNU6-1124P-201ENST00000384169 107 ntBASIC-2.04□□□□□ -2.74
CDX1P47902 SNORA26.2-201ENST00000390922 122 ntBASIC-2.04□□□□□ -2.74
CDX1P47902 RNU6-122P-201ENST00000516818 107 ntBASIC-2.04□□□□□ -2.74
CDX1P47902 AL731768.1-201ENST00000603124 139 ntBASIC-2.04□□□□□ -2.74
CDX1P47902 RNU6-1298P-201ENST00000362456 101 ntBASIC-2.05□□□□□ -2.74
CDX1P47902 SNORA25.5-201ENST00000363782 126 ntBASIC-2.05□□□□□ -2.74
CDX1P47902 RNU6-742P-201ENST00000365289 107 ntBASIC-2.05□□□□□ -2.74
CDX1P47902 SNORD30.1-201ENST00000391309 70 ntBASIC-2.05□□□□□ -2.74
CDX1P47902 RNU7-119P-201ENST00000459279 63 ntBASIC-2.05□□□□□ -2.74
CDX1P47902 Y_RNA.421-201ENST00000384052 101 ntBASIC-2.06□□□□□ -2.74
CDX1P47902 RNU6-871P-201ENST00000516122 100 ntBASIC-2.06□□□□□ -2.74
CDX1P47902 MIR5693-201ENST00000577722 73 ntBASIC-2.06□□□□□ -2.74
CDX1P47902 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-2.07□□□□□ -2.74
CDX1P47902 RNY4P25-201ENST00000459254 96 ntBASIC-2.07□□□□□ -2.74
CDX1P47902 RNU6-1169P-201ENST00000363537 103 ntBASIC-2.08□□□□□ -2.74
CDX1P47902 MIR1255A-201ENST00000408338 113 ntBASIC-2.08□□□□□ -2.74
CDX1P47902 RNY4P29-201ENST00000410801 97 ntBASIC-2.08□□□□□ -2.74
CDX1P47902 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.09□□□□□ -2.74
CDX1P47902 RNU6-419P-201ENST00000517030 63 ntBASIC-2.09□□□□□ -2.74
CDX1P47902 SNORA25.4-201ENST00000363666 124 ntBASIC-2.1□□□□□ -2.75
CDX1P47902 RNU6-857P-201ENST00000515893 110 ntBASIC-2.1□□□□□ -2.75
CDX1P47902 MIRLET7A3-201ENST00000362116 74 ntBASIC-2.11□□□□□ -2.75
CDX1P47902 RNU6-800P-201ENST00000384473 103 ntBASIC-2.11□□□□□ -2.75
CDX1P47902 RNU6-1255P-201ENST00000363434 112 ntBASIC-2.12□□□□□ -2.75
CDX1P47902 RNY4-201ENST00000516507 96 ntBASIC-2.12□□□□□ -2.75
CDX1P47902 Y_RNA.388-201ENST00000383919 113 ntBASIC-2.13□□□□□ -2.75
CDX1P47902 RNU6-822P-201ENST00000362707 106 ntBASIC-2.14□□□□□ -2.75
CDX1P47902 Y_RNA.79-201ENST00000362992 113 ntBASIC-2.14□□□□□ -2.75
CDX1P47902 RNU6-279P-201ENST00000391297 101 ntBASIC-2.14□□□□□ -2.75
CDX1P47902 Y_RNA.612-201ENST00000410717 95 ntBASIC-2.16□□□□□ -2.76
CDX1P47902 Y_RNA.43-201ENST00000362670 111 ntBASIC-2.17□□□□□ -2.76
CDX1P47902 Y_RNA.134-201ENST00000363435 105 ntBASIC-2.17□□□□□ -2.76
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms