Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC108019.1-201ENST00000512540 175 ntBASIC-1.55□□□□□ -2.66
SHMT1P34896 U4.2-201ENST00000618561 85 ntBASIC-1.55□□□□□ -2.66
SHMT1P34896 MIR365A-201ENST00000362260 87 ntBASIC-1.56□□□□□ -2.66
SHMT1P34896 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.56□□□□□ -2.66
SHMT1P34896 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.56□□□□□ -2.66
SHMT1P34896 MIR548AM-201ENST00000584298 74 ntBASIC-1.56□□□□□ -2.66
SHMT1P34896 MIR202-201ENST00000362219 110 ntBASIC-1.57□□□□□ -2.66
SHMT1P34896 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.57□□□□□ -2.66
SHMT1P34896 MIR548N-201ENST00000408742 75 ntBASIC-1.57□□□□□ -2.66
SHMT1P34896 MIR4756-201ENST00000577874 78 ntBASIC-1.57□□□□□ -2.66
SHMT1P34896 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.57□□□□□ -2.66
SHMT1P34896 AC110620.1-201ENST00000416042 228 ntBASIC-1.58□□□□□ -2.66
SHMT1P34896 RNU6-983P-201ENST00000516004 103 ntBASIC-1.58□□□□□ -2.66
SHMT1P34896 MIR3938-201ENST00000582157 103 ntBASIC-1.58□□□□□ -2.66
SHMT1P34896 RNU6-361P-201ENST00000364454 107 ntBASIC-1.59□□□□□ -2.66
SHMT1P34896 MIR466-201ENST00000580653 84 ntBASIC-1.59□□□□□ -2.66
SHMT1P34896 RNU6-471P-201ENST00000383944 106 ntBASIC-1.6□□□□□ -2.67
SHMT1P34896 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.6□□□□□ -2.67
SHMT1P34896 MIR548W-201ENST00000581970 74 ntBASIC-1.6□□□□□ -2.67
SHMT1P34896 MIR4441-201ENST00000582623 100 ntBASIC-1.6□□□□□ -2.67
SHMT1P34896 AL451105.1-201ENST00000450005 189 ntBASIC-1.61□□□□□ -2.67
SHMT1P34896 SNORD18C-201ENST00000362704 69 ntBASIC-1.62□□□□□ -2.67
SHMT1P34896 RNU6-638P-201ENST00000516582 104 ntBASIC-1.62□□□□□ -2.67
SHMT1P34896 SNORD114-3-201ENST00000364969 75 ntBASIC-1.63□□□□□ -2.67
SHMT1P34896 RNU6-530P-201ENST00000391180 107 ntBASIC-1.63□□□□□ -2.67
SHMT1P34896 SNORA17.4-201ENST00000391287 132 ntBASIC-1.63□□□□□ -2.67
SHMT1P34896 snoU13.10-201ENST00000459301 103 ntBASIC-1.64□□□□□ -2.67
SHMT1P34896 RNU6-68P-201ENST00000516576 104 ntBASIC-1.64□□□□□ -2.67
SHMT1P34896 RNU6-419P-201ENST00000517030 63 ntBASIC-1.64□□□□□ -2.67
SHMT1P34896 SNORD60-201ENST00000383903 83 ntBASIC-1.65□□□□□ -2.67
SHMT1P34896 RNU4-88P-201ENST00000411220 86 ntBASIC-1.66□□□□□ -2.68
SHMT1P34896 MIR664B-201ENST00000626756 61 ntBASIC-1.66□□□□□ -2.68
SHMT1P34896 RNU6-446P-201ENST00000362827 106 ntBASIC-1.68□□□□□ -2.68
SHMT1P34896 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.68□□□□□ -2.68
SHMT1P34896 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.68□□□□□ -2.68
SHMT1P34896 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.68□□□□□ -2.68
SHMT1P34896 MIR1207-201ENST00000408249 87 ntBASIC-1.69□□□□□ -2.68
SHMT1P34896 RNU6-980P-201ENST00000516925 103 ntBASIC-1.69□□□□□ -2.68
SHMT1P34896 MIR4426-201ENST00000640330 63 ntBASIC-1.7□□□□□ -2.68
SHMT1P34896 RNU6-742P-201ENST00000365289 107 ntBASIC-1.71□□□□□ -2.68
SHMT1P34896 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.72□□□□□ -2.68
SHMT1P34896 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.72□□□□□ -2.68
SHMT1P34896 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.72□□□□□ -2.68
SHMT1P34896 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.72□□□□□ -2.68
SHMT1P34896 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.72□□□□□ -2.68
SHMT1P34896 SNORD45.2-201ENST00000363552 72 ntBASIC-1.73□□□□□ -2.69
SHMT1P34896 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.73□□□□□ -2.69
SHMT1P34896 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.74□□□□□ -2.69
SHMT1P34896 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.74□□□□□ -2.69
SHMT1P34896 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.75□□□□□ -2.69
SHMT1P34896 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.75□□□□□ -2.69
SHMT1P34896 RNU6-590P-201ENST00000365039 107 ntBASIC-1.76□□□□□ -2.69
SHMT1P34896 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.76□□□□□ -2.69
SHMT1P34896 MIR548X-201ENST00000580069 75 ntBASIC-1.76□□□□□ -2.69
SHMT1P34896 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.77□□□□□ -2.69
SHMT1P34896 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.78□□□□□ -2.69
SHMT1P34896 RNU6-300P-201ENST00000459080 104 ntBASIC-1.78□□□□□ -2.69
SHMT1P34896 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.78□□□□□ -2.69
SHMT1P34896 SNORD113-4-201ENST00000364802 75 ntBASIC-1.79□□□□□ -2.7
SHMT1P34896 RNA5SP405-201ENST00000363059 114 ntBASIC-1.8□□□□□ -2.7
SHMT1P34896 RNU6-912P-201ENST00000363800 104 ntBASIC-1.8□□□□□ -2.7
SHMT1P34896 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.8□□□□□ -2.7
SHMT1P34896 MIR379-201ENST00000362218 67 ntBASIC-1.81□□□□□ -2.7
SHMT1P34896 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.81□□□□□ -2.7
SHMT1P34896 AC097484.2-201ENST00000509147 251 ntBASIC-1.81□□□□□ -2.7
SHMT1P34896 RNY4P27-201ENST00000363341 96 ntBASIC-1.82□□□□□ -2.7
SHMT1P34896 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.82□□□□□ -2.7
SHMT1P34896 RNU6-194P-201ENST00000363862 105 ntBASIC-1.83□□□□□ -2.7
SHMT1P34896 SNORD113-3-201ENST00000364830 72 ntBASIC-1.83□□□□□ -2.7
SHMT1P34896 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.83□□□□□ -2.7
SHMT1P34896 RNU6-118P-201ENST00000516552 102 ntBASIC-1.83□□□□□ -2.7
SHMT1P34896 RNU6-176P-201ENST00000517196 105 ntBASIC-1.83□□□□□ -2.7
SHMT1P34896 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.84□□□□□ -2.7
SHMT1P34896 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.84□□□□□ -2.7
SHMT1P34896 AC125388.1-201ENST00000459631 156 ntBASIC-1.85□□□□□ -2.71
SHMT1P34896 RNU6-829P-201ENST00000363700 112 ntBASIC-1.87□□□□□ -2.71
SHMT1P34896 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.87□□□□□ -2.71
SHMT1P34896 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.87□□□□□ -2.71
SHMT1P34896 MIR4748-201ENST00000578076 82 ntBASIC-1.87□□□□□ -2.71
SHMT1P34896 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.87□□□□□ -2.71
SHMT1P34896 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.87□□□□□ -2.71
SHMT1P34896 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.87□□□□□ -2.71
SHMT1P34896 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.87□□□□□ -2.71
SHMT1P34896 MIR3139-201ENST00000579145 76 ntBASIC-1.88□□□□□ -2.71
SHMT1P34896 FTX_4.1-201ENST00000616291 147 ntBASIC-1.89□□□□□ -2.71
SHMT1P34896 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.9□□□□□ -2.71
SHMT1P34896 MIR633-201ENST00000384821 98 ntBASIC-1.9□□□□□ -2.71
SHMT1P34896 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.91□□□□□ -2.72
SHMT1P34896 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.92□□□□□ -2.72
SHMT1P34896 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.93□□□□□ -2.72
SHMT1P34896 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.93□□□□□ -2.72
SHMT1P34896 MIR548H4-201ENST00000408689 111 ntBASIC-1.93□□□□□ -2.72
SHMT1P34896 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.93□□□□□ -2.72
SHMT1P34896 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-1.94□□□□□ -2.72
SHMT1P34896 AC139453.2-201ENST00000487255 133 ntBASIC-1.94□□□□□ -2.72
SHMT1P34896 RNU4-33P-201ENST00000364316 85 ntBASIC-1.95□□□□□ -2.72
SHMT1P34896 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.96□□□□□ -2.72
SHMT1P34896 MT-TM-201ENST00000387377 68 ntBASIC-1.97□□□□□ -2.72
SHMT1P34896 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.97□□□□□ -2.72
SHMT1P34896 MIR1254-1-201ENST00000408257 97 ntBASIC-1.98□□□□□ -2.73
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms