Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 RNU6-361P-201ENST00000364454 107 ntBASIC-0.98□□□□□ -2.57
FOXN3O00409 SNORD60-201ENST00000383903 83 ntBASIC-0.98□□□□□ -2.57
FOXN3O00409 RNU4-37P-201ENST00000410214 84 ntBASIC-0.98□□□□□ -2.57
FOXN3O00409 MIR3165-201ENST00000579874 75 ntBASIC-0.98□□□□□ -2.57
FOXN3O00409 U4.2-201ENST00000618561 85 ntBASIC-0.98□□□□□ -2.57
FOXN3O00409 RNU4-88P-201ENST00000411220 86 ntBASIC-0.99□□□□□ -2.57
FOXN3O00409 RNA5SP461-201ENST00000516451 104 ntBASIC-0.99□□□□□ -2.57
FOXN3O00409 RNU6-79P-201ENST00000362511 107 ntBASIC-1□□□□□ -2.57
FOXN3O00409 Y_RNA.365-201ENST00000365537 102 ntBASIC-1□□□□□ -2.57
FOXN3O00409 RNU6-300P-201ENST00000459080 104 ntBASIC-1□□□□□ -2.57
FOXN3O00409 MIR4306-201ENST00000583390 91 ntBASIC-1□□□□□ -2.57
FOXN3O00409 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.01□□□□□ -2.57
FOXN3O00409 RNU6-141P-201ENST00000410499 105 ntBASIC-1.01□□□□□ -2.57
FOXN3O00409 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.01□□□□□ -2.57
FOXN3O00409 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.01□□□□□ -2.57
FOXN3O00409 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.01□□□□□ -2.57
FOXN3O00409 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.02□□□□□ -2.57
FOXN3O00409 MIR3115-201ENST00000577915 68 ntBASIC-1.02□□□□□ -2.57
FOXN3O00409 MIR548AL-201ENST00000578416 97 ntBASIC-1.02□□□□□ -2.57
FOXN3O00409 MIR581-201ENST00000384895 96 ntBASIC-1.03□□□□□ -2.57
FOXN3O00409 MIR1207-201ENST00000408249 87 ntBASIC-1.04□□□□□ -2.58
FOXN3O00409 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.04□□□□□ -2.58
FOXN3O00409 MIR365A-201ENST00000362260 87 ntBASIC-1.05□□□□□ -2.58
FOXN3O00409 SNORD114-3-201ENST00000364969 75 ntBASIC-1.05□□□□□ -2.58
FOXN3O00409 RNU6-930P-201ENST00000390938 100 ntBASIC-1.05□□□□□ -2.58
FOXN3O00409 MIR548N-201ENST00000408742 75 ntBASIC-1.05□□□□□ -2.58
FOXN3O00409 RNU6-838P-201ENST00000363399 108 ntBASIC-1.06□□□□□ -2.58
FOXN3O00409 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.06□□□□□ -2.58
FOXN3O00409 MIR1285-2-201ENST00000408311 88 ntBASIC-1.06□□□□□ -2.58
FOXN3O00409 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.07□□□□□ -2.58
FOXN3O00409 RNU6-400P-201ENST00000391173 106 ntBASIC-1.09□□□□□ -2.58
FOXN3O00409 RNU6-706P-201ENST00000517229 104 ntBASIC-1.1□□□□□ -2.59
FOXN3O00409 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.11□□□□□ -2.59
FOXN3O00409 RNU6-986P-201ENST00000363133 102 ntBASIC-1.12□□□□□ -2.59
FOXN3O00409 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.12□□□□□ -2.59
FOXN3O00409 RNU6-695P-201ENST00000391157 104 ntBASIC-1.12□□□□□ -2.59
FOXN3O00409 MIR4441-201ENST00000582623 100 ntBASIC-1.12□□□□□ -2.59
FOXN3O00409 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.12□□□□□ -2.59
FOXN3O00409 SNORD18C-201ENST00000362704 69 ntBASIC-1.13□□□□□ -2.59
FOXN3O00409 RNU6-1204P-201ENST00000363948 107 ntBASIC-1.13□□□□□ -2.59
FOXN3O00409 MIR548F3-201ENST00000408509 87 ntBASIC-1.14□□□□□ -2.59
FOXN3O00409 RNA5SP180-201ENST00000516181 101 ntBASIC-1.14□□□□□ -2.59
FOXN3O00409 MIR4520-1-201ENST00000582609 70 ntBASIC-1.14□□□□□ -2.59
FOXN3O00409 MIR6502-201ENST00000617296 76 ntBASIC-1.14□□□□□ -2.59
FOXN3O00409 MIR4317-201ENST00000637586 65 ntBASIC-1.14□□□□□ -2.59
FOXN3O00409 RNU6-176P-201ENST00000517196 105 ntBASIC-1.15□□□□□ -2.59
FOXN3O00409 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.16□□□□□ -2.6
FOXN3O00409 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.16□□□□□ -2.6
FOXN3O00409 AC138207.3-201ENST00000585289 166 ntBASIC-1.16□□□□□ -2.6
FOXN3O00409 MIR548H4-201ENST00000408689 111 ntBASIC-1.17□□□□□ -2.6
FOXN3O00409 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.17□□□□□ -2.6
FOXN3O00409 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.17□□□□□ -2.6
FOXN3O00409 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.18□□□□□ -2.6
FOXN3O00409 MIR545-201ENST00000385085 106 ntBASIC-1.18□□□□□ -2.6
FOXN3O00409 HLA-S-202ENST00000425174 53 ntBASIC-1.19□□□□□ -2.6
FOXN3O00409 RNU6-68P-201ENST00000516576 104 ntBASIC-1.2□□□□□ -2.6
FOXN3O00409 MIR5591-201ENST00000578248 65 ntBASIC-1.21□□□□□ -2.6
FOXN3O00409 MIR3123-201ENST00000583417 75 ntBASIC-1.21□□□□□ -2.6
FOXN3O00409 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.21□□□□□ -2.6
FOXN3O00409 RNU6-226P-201ENST00000363778 107 ntBASIC-1.23□□□□□ -2.61
FOXN3O00409 RNU6-1326P-201ENST00000391262 107 ntBASIC-1.23□□□□□ -2.61
FOXN3O00409 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.24□□□□□ -2.61
FOXN3O00409 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.24□□□□□ -2.61
FOXN3O00409 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.25□□□□□ -2.61
FOXN3O00409 RNU6-912P-201ENST00000363800 104 ntBASIC-1.25□□□□□ -2.61
FOXN3O00409 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.25□□□□□ -2.61
FOXN3O00409 RNU6-822P-201ENST00000362707 106 ntBASIC-1.26□□□□□ -2.61
FOXN3O00409 RNY4P27-201ENST00000363341 96 ntBASIC-1.26□□□□□ -2.61
FOXN3O00409 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.26□□□□□ -2.61
FOXN3O00409 RNA5SP86-201ENST00000390869 98 ntBASIC-1.26□□□□□ -2.61
FOXN3O00409 MIR4770-201ENST00000579149 58 ntBASIC-1.26□□□□□ -2.61
FOXN3O00409 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.27□□□□□ -2.61
FOXN3O00409 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.27□□□□□ -2.61
FOXN3O00409 MIR379-201ENST00000362218 67 ntBASIC-1.28□□□□□ -2.61
FOXN3O00409 Y_RNA.345-201ENST00000365384 92 ntBASIC-1.28□□□□□ -2.61
FOXN3O00409 MIR1246-201ENST00000636535 73 ntBASIC-1.28□□□□□ -2.61
FOXN3O00409 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.29□□□□□ -2.62
FOXN3O00409 MIR548H1-201ENST00000408610 102 ntBASIC-1.29□□□□□ -2.62
FOXN3O00409 MIR487B-201ENST00000385021 84 ntBASIC-1.3□□□□□ -2.62
FOXN3O00409 snoU13.10-201ENST00000459301 103 ntBASIC-1.3□□□□□ -2.62
FOXN3O00409 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.31□□□□□ -2.62
FOXN3O00409 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.31□□□□□ -2.62
FOXN3O00409 SNORD115.2-201ENST00000391126 59 ntBASIC-1.32□□□□□ -2.62
FOXN3O00409 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.34□□□□□ -2.62
FOXN3O00409 MIR548W-201ENST00000581970 74 ntBASIC-1.34□□□□□ -2.62
FOXN3O00409 RNU6-841P-201ENST00000383872 107 ntBASIC-1.35□□□□□ -2.63
FOXN3O00409 RNU6-59P-201ENST00000384787 107 ntBASIC-1.36□□□□□ -2.63
FOXN3O00409 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.37□□□□□ -2.63
FOXN3O00409 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.37□□□□□ -2.63
FOXN3O00409 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.38□□□□□ -2.63
FOXN3O00409 MIR1254-1-201ENST00000408257 97 ntBASIC-1.38□□□□□ -2.63
FOXN3O00409 MIR548AM-201ENST00000584298 74 ntBASIC-1.38□□□□□ -2.63
FOXN3O00409 RNU6-1169P-201ENST00000363537 103 ntBASIC-1.39□□□□□ -2.63
FOXN3O00409 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.39□□□□□ -2.63
FOXN3O00409 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.39□□□□□ -2.63
FOXN3O00409 Y_RNA.134-201ENST00000363435 105 ntBASIC-1.4□□□□□ -2.63
FOXN3O00409 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.4□□□□□ -2.63
FOXN3O00409 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.43□□□□□ -2.64
FOXN3O00409 SNORD18.1-201ENST00000363807 70 ntBASIC-1.44□□□□□ -2.64
FOXN3O00409 Y_RNA.206-201ENST00000364136 102 ntBASIC-1.44□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 267.2 ms