Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 RNU6-1275P-201ENST00000391087 107 ntBASIC-1.52□□□□□ -2.65
TRAV40A0A0B4J280 MIR548N-201ENST00000408742 75 ntBASIC-1.52□□□□□ -2.65
TRAV40A0A0B4J280 Y_RNA.685-201ENST00000516532 108 ntBASIC-1.52□□□□□ -2.65
TRAV40A0A0B4J280 SNORD18.1-201ENST00000363807 70 ntBASIC-1.53□□□□□ -2.65
TRAV40A0A0B4J280 RNU6-361P-201ENST00000364454 107 ntBASIC-1.53□□□□□ -2.65
TRAV40A0A0B4J280 AC108019.1-201ENST00000512540 175 ntBASIC-1.53□□□□□ -2.65
TRAV40A0A0B4J280 SNORD60-201ENST00000383903 83 ntBASIC-1.54□□□□□ -2.66
TRAV40A0A0B4J280 MIR4756-201ENST00000577874 78 ntBASIC-1.54□□□□□ -2.66
TRAV40A0A0B4J280 MIR1246-201ENST00000636535 73 ntBASIC-1.54□□□□□ -2.66
TRAV40A0A0B4J280 SNORD18C-201ENST00000362704 69 ntBASIC-1.55□□□□□ -2.66
TRAV40A0A0B4J280 RNU6-446P-201ENST00000362827 106 ntBASIC-1.55□□□□□ -2.66
TRAV40A0A0B4J280 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.55□□□□□ -2.66
TRAV40A0A0B4J280 RNU6-419P-201ENST00000517030 63 ntBASIC-1.55□□□□□ -2.66
TRAV40A0A0B4J280 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.55□□□□□ -2.66
TRAV40A0A0B4J280 MIR4426-201ENST00000640330 63 ntBASIC-1.55□□□□□ -2.66
TRAV40A0A0B4J280 RNU6-742P-201ENST00000365289 107 ntBASIC-1.56□□□□□ -2.66
TRAV40A0A0B4J280 RNU4-88P-201ENST00000411220 86 ntBASIC-1.56□□□□□ -2.66
TRAV40A0A0B4J280 AC114801.3-201ENST00000510231 177 ntBASIC-1.56□□□□□ -2.66
TRAV40A0A0B4J280 RNU6-471P-201ENST00000383944 106 ntBASIC-1.58□□□□□ -2.66
TRAV40A0A0B4J280 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.58□□□□□ -2.66
TRAV40A0A0B4J280 RNU6-68P-201ENST00000516576 104 ntBASIC-1.58□□□□□ -2.66
TRAV40A0A0B4J280 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.59□□□□□ -2.66
TRAV40A0A0B4J280 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.59□□□□□ -2.66
TRAV40A0A0B4J280 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.59□□□□□ -2.66
TRAV40A0A0B4J280 RNA5SP180-201ENST00000516181 101 ntBASIC-1.59□□□□□ -2.66
TRAV40A0A0B4J280 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.59□□□□□ -2.66
TRAV40A0A0B4J280 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.59□□□□□ -2.66
TRAV40A0A0B4J280 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.61□□□□□ -2.67
TRAV40A0A0B4J280 U4.2-201ENST00000618561 85 ntBASIC-1.61□□□□□ -2.67
TRAV40A0A0B4J280 MIR365A-201ENST00000362260 87 ntBASIC-1.62□□□□□ -2.67
TRAV40A0A0B4J280 SNORD45.2-201ENST00000363552 72 ntBASIC-1.62□□□□□ -2.67
TRAV40A0A0B4J280 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.62□□□□□ -2.67
TRAV40A0A0B4J280 SNORD113-4-201ENST00000364802 75 ntBASIC-1.62□□□□□ -2.67
TRAV40A0A0B4J280 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.63□□□□□ -2.67
TRAV40A0A0B4J280 RNU6-300P-201ENST00000459080 104 ntBASIC-1.63□□□□□ -2.67
TRAV40A0A0B4J280 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.63□□□□□ -2.67
TRAV40A0A0B4J280 RNU6-912P-201ENST00000363800 104 ntBASIC-1.64□□□□□ -2.67
TRAV40A0A0B4J280 MIR1285-2-201ENST00000408311 88 ntBASIC-1.64□□□□□ -2.67
TRAV40A0A0B4J280 RNU6-980P-201ENST00000516925 103 ntBASIC-1.64□□□□□ -2.67
TRAV40A0A0B4J280 SNORD114-3-201ENST00000364969 75 ntBASIC-1.65□□□□□ -2.67
TRAV40A0A0B4J280 RNU6-590P-201ENST00000365039 107 ntBASIC-1.65□□□□□ -2.67
TRAV40A0A0B4J280 MIR548X-201ENST00000580069 75 ntBASIC-1.65□□□□□ -2.67
TRAV40A0A0B4J280 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.66□□□□□ -2.68
TRAV40A0A0B4J280 MIR633-201ENST00000384821 98 ntBASIC-1.66□□□□□ -2.68
TRAV40A0A0B4J280 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.66□□□□□ -2.68
TRAV40A0A0B4J280 MIR4441-201ENST00000582623 100 ntBASIC-1.66□□□□□ -2.68
TRAV40A0A0B4J280 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.67□□□□□ -2.68
TRAV40A0A0B4J280 RNU6-983P-201ENST00000516004 103 ntBASIC-1.67□□□□□ -2.68
TRAV40A0A0B4J280 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.69□□□□□ -2.68
TRAV40A0A0B4J280 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.69□□□□□ -2.68
TRAV40A0A0B4J280 MIR664B-201ENST00000626756 61 ntBASIC-1.69□□□□□ -2.68
TRAV40A0A0B4J280 RNU6-829P-201ENST00000363700 112 ntBASIC-1.7□□□□□ -2.68
TRAV40A0A0B4J280 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.7□□□□□ -2.68
TRAV40A0A0B4J280 SNORD113-3-201ENST00000364830 72 ntBASIC-1.7□□□□□ -2.68
TRAV40A0A0B4J280 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.7□□□□□ -2.68
TRAV40A0A0B4J280 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.71□□□□□ -2.68
TRAV40A0A0B4J280 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.71□□□□□ -2.68
TRAV40A0A0B4J280 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.71□□□□□ -2.68
TRAV40A0A0B4J280 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.72□□□□□ -2.68
TRAV40A0A0B4J280 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.72□□□□□ -2.68
TRAV40A0A0B4J280 AC097484.2-201ENST00000509147 251 ntBASIC-1.73□□□□□ -2.69
TRAV40A0A0B4J280 MIR1207-201ENST00000408249 87 ntBASIC-1.74□□□□□ -2.69
TRAV40A0A0B4J280 MIR379-201ENST00000362218 67 ntBASIC-1.75□□□□□ -2.69
TRAV40A0A0B4J280 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-1.75□□□□□ -2.69
TRAV40A0A0B4J280 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.76□□□□□ -2.69
TRAV40A0A0B4J280 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.76□□□□□ -2.69
TRAV40A0A0B4J280 RNU6-638P-201ENST00000516582 104 ntBASIC-1.76□□□□□ -2.69
TRAV40A0A0B4J280 RNU6-176P-201ENST00000517196 105 ntBASIC-1.76□□□□□ -2.69
TRAV40A0A0B4J280 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.76□□□□□ -2.69
TRAV40A0A0B4J280 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.76□□□□□ -2.69
TRAV40A0A0B4J280 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.76□□□□□ -2.69
TRAV40A0A0B4J280 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.76□□□□□ -2.69
TRAV40A0A0B4J280 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.76□□□□□ -2.69
TRAV40A0A0B4J280 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.77□□□□□ -2.69
TRAV40A0A0B4J280 MIR1254-1-201ENST00000408257 97 ntBASIC-1.77□□□□□ -2.69
TRAV40A0A0B4J280 SNORA72.7-201ENST00000516349 94 ntBASIC-1.77□□□□□ -2.69
TRAV40A0A0B4J280 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.77□□□□□ -2.69
TRAV40A0A0B4J280 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.78□□□□□ -2.69
TRAV40A0A0B4J280 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.78□□□□□ -2.69
TRAV40A0A0B4J280 RNU6-118P-201ENST00000516552 102 ntBASIC-1.78□□□□□ -2.69
TRAV40A0A0B4J280 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.78□□□□□ -2.69
TRAV40A0A0B4J280 RNU4-33P-201ENST00000364316 85 ntBASIC-1.8□□□□□ -2.7
TRAV40A0A0B4J280 RNA5SP405-201ENST00000363059 114 ntBASIC-1.81□□□□□ -2.7
TRAV40A0A0B4J280 RNU6-194P-201ENST00000363862 105 ntBASIC-1.81□□□□□ -2.7
TRAV40A0A0B4J280 FTX_4.1-201ENST00000616291 147 ntBASIC-1.81□□□□□ -2.7
TRAV40A0A0B4J280 RNU6-1169P-201ENST00000363537 103 ntBASIC-1.82□□□□□ -2.7
TRAV40A0A0B4J280 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.82□□□□□ -2.7
TRAV40A0A0B4J280 AC139453.2-201ENST00000487255 133 ntBASIC-1.82□□□□□ -2.7
TRAV40A0A0B4J280 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.83□□□□□ -2.7
TRAV40A0A0B4J280 AC079150.2-201ENST00000443733 78 ntBASIC-1.83□□□□□ -2.7
TRAV40A0A0B4J280 AC125388.1-201ENST00000459631 156 ntBASIC-1.83□□□□□ -2.7
TRAV40A0A0B4J280 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.85□□□□□ -2.71
TRAV40A0A0B4J280 MIR548H4-201ENST00000408689 111 ntBASIC-1.85□□□□□ -2.71
TRAV40A0A0B4J280 MIR4748-201ENST00000578076 82 ntBASIC-1.85□□□□□ -2.71
TRAV40A0A0B4J280 Y_RNA.382-201ENST00000365672 114 ntBASIC-1.86□□□□□ -2.71
TRAV40A0A0B4J280 RNU6-1008P-201ENST00000384160 104 ntBASIC-1.86□□□□□ -2.71
TRAV40A0A0B4J280 RNY4P27-201ENST00000363341 96 ntBASIC-1.88□□□□□ -2.71
TRAV40A0A0B4J280 RNU6-141P-201ENST00000410499 105 ntBASIC-1.88□□□□□ -2.71
TRAV40A0A0B4J280 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.89□□□□□ -2.71
TRAV40A0A0B4J280 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.89□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms