Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 RNU6-838P-201ENST00000363399 108 ntBASIC-0.1□□□□□ -2.43
CCDC9Q9Y3X0 MIR5683-201ENST00000636514 76 ntBASIC-0.1□□□□□ -2.43
CCDC9Q9Y3X0 SNORD114-11-201ENST00000363738 75 ntBASIC-0.11□□□□□ -2.43
CCDC9Q9Y3X0 MIR214-201ENST00000385214 110 ntBASIC-0.11□□□□□ -2.43
CCDC9Q9Y3X0 AP000533.3-201ENST00000447704 118 ntBASIC-0.11□□□□□ -2.43
CCDC9Q9Y3X0 Y_RNA.699-201ENST00000516803 93 ntBASIC-0.11□□□□□ -2.43
CCDC9Q9Y3X0 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.12□□□□□ -2.43
CCDC9Q9Y3X0 SNORD95.1-201ENST00000364099 68 ntBASIC-0.12□□□□□ -2.43
CCDC9Q9Y3X0 MIR520D-201ENST00000385002 87 ntBASIC-0.12□□□□□ -2.43
CCDC9Q9Y3X0 MIR1468-201ENST00000410600 86 ntBASIC-0.12□□□□□ -2.43
CCDC9Q9Y3X0 RNA5SP169-201ENST00000517268 117 ntBASIC-0.12□□□□□ -2.43
CCDC9Q9Y3X0 AP002795.1-201ENST00000534879 84 ntBASIC-0.12□□□□□ -2.43
CCDC9Q9Y3X0 SNORA27.2-201ENST00000363365 126 ntBASIC-0.13□□□□□ -2.43
CCDC9Q9Y3X0 SNORD114-17-201ENST00000364699 75 ntBASIC-0.13□□□□□ -2.43
CCDC9Q9Y3X0 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.13□□□□□ -2.43
CCDC9Q9Y3X0 DLEU2_4.2-201ENST00000616613 58 ntBASIC-0.13□□□□□ -2.43
CCDC9Q9Y3X0 MIR409-201ENST00000362237 79 ntBASIC-0.14□□□□□ -2.43
CCDC9Q9Y3X0 MIR101-1-201ENST00000362265 75 ntBASIC-0.14□□□□□ -2.43
CCDC9Q9Y3X0 SNORA32.1-201ENST00000364514 115 ntBASIC-0.14□□□□□ -2.43
CCDC9Q9Y3X0 RNU6-258P-201ENST00000390884 101 ntBASIC-0.14□□□□□ -2.43
CCDC9Q9Y3X0 RNA5SP67-201ENST00000516422 131 ntBASIC-0.14□□□□□ -2.43
CCDC9Q9Y3X0 MIR548F3-201ENST00000408509 87 ntBASIC-0.15□□□□□ -2.43
CCDC9Q9Y3X0 RNU6-721P-201ENST00000410155 105 ntBASIC-0.15□□□□□ -2.43
CCDC9Q9Y3X0 RPS29P8-201ENST00000445109 171 ntBASIC-0.15□□□□□ -2.43
CCDC9Q9Y3X0 AC021146.6-201ENST00000514659 117 ntBASIC-0.15□□□□□ -2.43
CCDC9Q9Y3X0 MIR29B1-201ENST00000385015 81 ntBASIC-0.16□□□□□ -2.44
CCDC9Q9Y3X0 RNA5SP451-201ENST00000410588 110 ntBASIC-0.16□□□□□ -2.44
CCDC9Q9Y3X0 MIR548AL-201ENST00000578416 97 ntBASIC-0.16□□□□□ -2.44
CCDC9Q9Y3X0 SNORD114-28-201ENST00000363610 72 ntBASIC-0.17□□□□□ -2.44
CCDC9Q9Y3X0 RNU6-530P-201ENST00000391180 107 ntBASIC-0.17□□□□□ -2.44
CCDC9Q9Y3X0 RNU6-608P-201ENST00000383927 104 ntBASIC-0.18□□□□□ -2.44
CCDC9Q9Y3X0 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.21□□□□□ -2.44
CCDC9Q9Y3X0 MIR507-201ENST00000385234 94 ntBASIC-0.21□□□□□ -2.44
CCDC9Q9Y3X0 SNORD14C-201ENST00000365382 88 ntBASIC-0.22□□□□□ -2.44
CCDC9Q9Y3X0 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.22□□□□□ -2.44
CCDC9Q9Y3X0 MIR224-201ENST00000384889 81 ntBASIC-0.22□□□□□ -2.44
CCDC9Q9Y3X0 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.22□□□□□ -2.44
CCDC9Q9Y3X0 MIR8064-201ENST00000612863 90 ntBASIC-0.22□□□□□ -2.44
CCDC9Q9Y3X0 RNU6-1204P-201ENST00000363948 107 ntBASIC-0.23□□□□□ -2.45
CCDC9Q9Y3X0 SNORD126-201ENST00000459475 77 ntBASIC-0.23□□□□□ -2.45
CCDC9Q9Y3X0 SNORD114-14-201ENST00000362723 75 ntBASIC-0.24□□□□□ -2.45
CCDC9Q9Y3X0 RNU6-742P-201ENST00000365289 107 ntBASIC-0.24□□□□□ -2.45
CCDC9Q9Y3X0 MIR545-201ENST00000385085 106 ntBASIC-0.24□□□□□ -2.45
CCDC9Q9Y3X0 SNORA3B-201ENST00000391305 131 ntBASIC-0.24□□□□□ -2.45
CCDC9Q9Y3X0 RPL35AP4-201ENST00000412007 102 ntBASIC-0.24□□□□□ -2.45
CCDC9Q9Y3X0 RNU6-361P-201ENST00000364454 107 ntBASIC-0.25□□□□□ -2.45
CCDC9Q9Y3X0 MIR23C-201ENST00000579846 100 ntBASIC-0.25□□□□□ -2.45
CCDC9Q9Y3X0 MIR196A2-201ENST00000385189 110 ntBASIC-0.26□□□□□ -2.45
CCDC9Q9Y3X0 Y_RNA.603-201ENST00000410571 108 ntBASIC-0.26□□□□□ -2.45
CCDC9Q9Y3X0 RNU6-284P-201ENST00000411105 106 ntBASIC-0.26□□□□□ -2.45
CCDC9Q9Y3X0 RNU6-320P-201ENST00000516511 106 ntBASIC-0.26□□□□□ -2.45
CCDC9Q9Y3X0 MIR4426-201ENST00000640330 63 ntBASIC-0.26□□□□□ -2.45
CCDC9Q9Y3X0 RNY3P8-201ENST00000411366 126 ntBASIC-0.27□□□□□ -2.45
CCDC9Q9Y3X0 MIR147A-201ENST00000385079 72 ntBASIC-0.28□□□□□ -2.45
CCDC9Q9Y3X0 MIR202-201ENST00000362219 110 ntBASIC-0.29□□□□□ -2.46
CCDC9Q9Y3X0 RNA5SP266-201ENST00000410273 108 ntBASIC-0.29□□□□□ -2.46
CCDC9Q9Y3X0 RNY1P9-201ENST00000532431 109 ntBASIC-0.29□□□□□ -2.46
CCDC9Q9Y3X0 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-0.29□□□□□ -2.46
CCDC9Q9Y3X0 RNA5SP26-201ENST00000362406 119 ntBASIC-0.3□□□□□ -2.46
CCDC9Q9Y3X0 SNORA17.4-201ENST00000391287 132 ntBASIC-0.3□□□□□ -2.46
CCDC9Q9Y3X0 AC090616.4-201ENST00000448026 115 ntBASIC-0.3□□□□□ -2.46
CCDC9Q9Y3X0 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.3□□□□□ -2.46
CCDC9Q9Y3X0 RNU6-986P-201ENST00000363133 102 ntBASIC-0.31□□□□□ -2.46
CCDC9Q9Y3X0 RNU6-431P-201ENST00000383874 107 ntBASIC-0.31□□□□□ -2.46
CCDC9Q9Y3X0 SNORD60-201ENST00000383903 83 ntBASIC-0.31□□□□□ -2.46
CCDC9Q9Y3X0 MIR4436A-201ENST00000585278 85 ntBASIC-0.31□□□□□ -2.46
CCDC9Q9Y3X0 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.32□□□□□ -2.46
CCDC9Q9Y3X0 RNU6-300P-201ENST00000459080 104 ntBASIC-0.32□□□□□ -2.46
CCDC9Q9Y3X0 RNU6-176P-201ENST00000517196 105 ntBASIC-0.32□□□□□ -2.46
CCDC9Q9Y3X0 RNA5SP275-201ENST00000363936 118 ntBASIC-0.33□□□□□ -2.46
CCDC9Q9Y3X0 SNORD64-201ENST00000386683 67 ntBASIC-0.33□□□□□ -2.46
CCDC9Q9Y3X0 MIR4317-201ENST00000637586 65 ntBASIC-0.33□□□□□ -2.46
CCDC9Q9Y3X0 RNU6-822P-201ENST00000362707 106 ntBASIC-0.34□□□□□ -2.46
CCDC9Q9Y3X0 MIR548H4-201ENST00000408689 111 ntBASIC-0.34□□□□□ -2.46
CCDC9Q9Y3X0 MIR548AX-201ENST00000580117 73 ntBASIC-0.34□□□□□ -2.46
CCDC9Q9Y3X0 RNU6-1047P-201ENST00000364418 107 ntBASIC-0.36□□□□□ -2.47
CCDC9Q9Y3X0 SNX3P1X-201ENST00000414887 175 ntBASIC-0.36□□□□□ -2.47
CCDC9Q9Y3X0 MIR6818-201ENST00000621576 65 ntBASIC-0.36□□□□□ -2.47
CCDC9Q9Y3X0 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.37□□□□□ -2.47
CCDC9Q9Y3X0 MIR548N-201ENST00000408742 75 ntBASIC-0.37□□□□□ -2.47
CCDC9Q9Y3X0 snoU83B.1-201ENST00000517136 88 ntBASIC-0.37□□□□□ -2.47
CCDC9Q9Y3X0 AC120024.2-201ENST00000576526 175 ntBASIC-0.37□□□□□ -2.47
CCDC9Q9Y3X0 AC013734.1-201ENST00000619329 111 ntBASIC-0.38□□□□□ -2.47
CCDC9Q9Y3X0 MIR382-201ENST00000637119 76 ntBASIC-0.38□□□□□ -2.47
CCDC9Q9Y3X0 SNORD114-25-201ENST00000363742 72 ntBASIC-0.39□□□□□ -2.47
CCDC9Q9Y3X0 RNU6-1008P-201ENST00000384160 104 ntBASIC-0.39□□□□□ -2.47
CCDC9Q9Y3X0 RNU6-1326P-201ENST00000391262 107 ntBASIC-0.39□□□□□ -2.47
CCDC9Q9Y3X0 AC018880.2-201ENST00000414265 201 ntBASIC-0.39□□□□□ -2.47
CCDC9Q9Y3X0 Y_RNA.781-201ENST00000620301 103 ntBASIC-0.39□□□□□ -2.47
CCDC9Q9Y3X0 MIR4723-201ENST00000585070 81 ntBASIC-0.4□□□□□ -2.47
CCDC9Q9Y3X0 RNU6-164P-201ENST00000364604 103 ntBASIC-0.41□□□□□ -2.48
CCDC9Q9Y3X0 RNU6-563P-201ENST00000364872 108 ntBASIC-0.41□□□□□ -2.48
CCDC9Q9Y3X0 RNU4-63P-201ENST00000411313 118 ntBASIC-0.41□□□□□ -2.48
CCDC9Q9Y3X0 RNU6-59P-201ENST00000384787 107 ntBASIC-0.42□□□□□ -2.48
CCDC9Q9Y3X0 MIR548AZ-201ENST00000616567 95 ntBASIC-0.42□□□□□ -2.48
CCDC9Q9Y3X0 U6.97-201ENST00000636904 101 ntBASIC-0.42□□□□□ -2.48
CCDC9Q9Y3X0 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.43□□□□□ -2.48
CCDC9Q9Y3X0 Y_RNA.223-201ENST00000364290 113 ntBASIC-0.44□□□□□ -2.48
CCDC9Q9Y3X0 Y_RNA.345-201ENST00000365384 92 ntBASIC-0.44□□□□□ -2.48
CCDC9Q9Y3X0 SNORA32.3-201ENST00000384772 121 ntBASIC-0.44□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 170.4 ms