Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 SNORD116-24-201ENST00000384549 92 ntBASIC-2.25□□□□□ -2.77
VPS28Q9UK41 MIR496-201ENST00000385226 102 ntBASIC-2.25□□□□□ -2.77
VPS28Q9UK41 MIR4756-201ENST00000577874 78 ntBASIC-2.25□□□□□ -2.77
VPS28Q9UK41 Y_RNA.684-201ENST00000516510 99 ntBASIC-2.26□□□□□ -2.77
VPS28Q9UK41 MIR664B-201ENST00000626756 61 ntBASIC-2.26□□□□□ -2.77
VPS28Q9UK41 MIR520D-201ENST00000385002 87 ntBASIC-2.27□□□□□ -2.77
VPS28Q9UK41 MIR23C-201ENST00000579846 100 ntBASIC-2.27□□□□□ -2.77
VPS28Q9UK41 SNORD1B-201ENST00000363091 84 ntBASIC-2.28□□□□□ -2.77
VPS28Q9UK41 RNU6-820P-201ENST00000384273 107 ntBASIC-2.28□□□□□ -2.77
VPS28Q9UK41 MIR3134-201ENST00000579433 74 ntBASIC-2.28□□□□□ -2.77
VPS28Q9UK41 Y_RNA.340-201ENST00000365330 92 ntBASIC-2.29□□□□□ -2.78
VPS28Q9UK41 Y_RNA.502-201ENST00000384478 113 ntBASIC-2.29□□□□□ -2.78
VPS28Q9UK41 RNU6-1267P-201ENST00000410747 107 ntBASIC-2.29□□□□□ -2.78
VPS28Q9UK41 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-2.29□□□□□ -2.78
VPS28Q9UK41 Y_RNA.788-201ENST00000622394 112 ntBASIC-2.29□□□□□ -2.78
VPS28Q9UK41 RNU6-119P-201ENST00000364882 107 ntBASIC-2.3□□□□□ -2.78
VPS28Q9UK41 SNORD115-31-201ENST00000365318 82 ntBASIC-2.3□□□□□ -2.78
VPS28Q9UK41 Y_RNA.369-201ENST00000365568 117 ntBASIC-2.3□□□□□ -2.78
VPS28Q9UK41 MIR5582-201ENST00000579697 68 ntBASIC-2.3□□□□□ -2.78
VPS28Q9UK41 MIR3170-201ENST00000582699 77 ntBASIC-2.3□□□□□ -2.78
VPS28Q9UK41 RNU6-995P-201ENST00000391244 107 ntBASIC-2.31□□□□□ -2.78
VPS28Q9UK41 RNU6-980P-201ENST00000516925 103 ntBASIC-2.31□□□□□ -2.78
VPS28Q9UK41 RNU6-247P-201ENST00000362636 107 ntBASIC-2.32□□□□□ -2.78
VPS28Q9UK41 RNU6-542P-201ENST00000516405 103 ntBASIC-2.32□□□□□ -2.78
VPS28Q9UK41 RNU6-687P-201ENST00000516443 89 ntBASIC-2.32□□□□□ -2.78
VPS28Q9UK41 RNU6-411P-201ENST00000384451 107 ntBASIC-2.34□□□□□ -2.78
VPS28Q9UK41 RNU6-400P-201ENST00000391173 106 ntBASIC-2.34□□□□□ -2.78
VPS28Q9UK41 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-2.34□□□□□ -2.78
VPS28Q9UK41 Y_RNA.81-201ENST00000362997 102 ntBASIC-2.37□□□□□ -2.79
VPS28Q9UK41 RNU6-787P-201ENST00000384032 107 ntBASIC-2.38□□□□□ -2.79
VPS28Q9UK41 MIR3139-201ENST00000579145 76 ntBASIC-2.38□□□□□ -2.79
VPS28Q9UK41 RNU6-79P-201ENST00000362511 107 ntBASIC-2.39□□□□□ -2.79
VPS28Q9UK41 Y_RNA.699-201ENST00000516803 93 ntBASIC-2.39□□□□□ -2.79
VPS28Q9UK41 U7.4-201ENST00000614961 63 ntBASIC-2.39□□□□□ -2.79
VPS28Q9UK41 Y_RNA.103-201ENST00000363171 102 ntBASIC-2.4□□□□□ -2.79
VPS28Q9UK41 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.4□□□□□ -2.79
VPS28Q9UK41 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.4□□□□□ -2.79
VPS28Q9UK41 RNU6-172P-201ENST00000411000 93 ntBASIC-2.4□□□□□ -2.79
VPS28Q9UK41 RNU7-151P-201ENST00000516930 53 ntBASIC-2.4□□□□□ -2.79
VPS28Q9UK41 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.4□□□□□ -2.79
VPS28Q9UK41 RNU6-92P-201ENST00000605893 104 ntBASIC-2.4□□□□□ -2.79
VPS28Q9UK41 AC062037.1-201ENST00000605302 128 ntBASIC-2.42□□□□□ -2.8
VPS28Q9UK41 RNA5SP405-201ENST00000363059 114 ntBASIC-2.43□□□□□ -2.8
VPS28Q9UK41 RNU6-1015P-201ENST00000517121 99 ntBASIC-2.44□□□□□ -2.8
VPS28Q9UK41 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.45□□□□□ -2.8
VPS28Q9UK41 MT-TM-201ENST00000387377 68 ntBASIC-2.46□□□□□ -2.8
VPS28Q9UK41 Y_RNA.175-201ENST00000363794 111 ntBASIC-2.47□□□□□ -2.8
VPS28Q9UK41 MIR579-201ENST00000385221 98 ntBASIC-2.47□□□□□ -2.8
VPS28Q9UK41 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-2.47□□□□□ -2.8
VPS28Q9UK41 SNORD54-201ENST00000459159 67 ntBASIC-2.47□□□□□ -2.8
VPS28Q9UK41 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.48□□□□□ -2.81
VPS28Q9UK41 RNU6-634P-201ENST00000459134 106 ntBASIC-2.48□□□□□ -2.81
VPS28Q9UK41 Y_RNA.443-201ENST00000384135 111 ntBASIC-2.49□□□□□ -2.81
VPS28Q9UK41 MIR3202-2-201ENST00000635980 79 ntBASIC-2.49□□□□□ -2.81
VPS28Q9UK41 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-2.49□□□□□ -2.81
VPS28Q9UK41 SNORD63.2-201ENST00000516303 64 ntBASIC-2.5□□□□□ -2.81
VPS28Q9UK41 AC120024.2-201ENST00000576526 175 ntBASIC-2.5□□□□□ -2.81
VPS28Q9UK41 MIR7978-201ENST00000636158 59 ntBASIC-2.5□□□□□ -2.81
VPS28Q9UK41 SNORA27.2-201ENST00000363365 126 ntBASIC-2.51□□□□□ -2.81
VPS28Q9UK41 RNU6-258P-201ENST00000390884 101 ntBASIC-2.51□□□□□ -2.81
VPS28Q9UK41 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.51□□□□□ -2.81
VPS28Q9UK41 Y_RNA.228-201ENST00000364346 98 ntBASIC-2.52□□□□□ -2.81
VPS28Q9UK41 RNU6-669P-201ENST00000365575 107 ntBASIC-2.52□□□□□ -2.81
VPS28Q9UK41 RNU6-663P-201ENST00000391105 106 ntBASIC-2.52□□□□□ -2.81
VPS28Q9UK41 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-2.52□□□□□ -2.81
VPS28Q9UK41 MTRNR2L9-201ENST00000622562 75 ntBASIC-2.52□□□□□ -2.81
VPS28Q9UK41 RNU6-194P-201ENST00000363862 105 ntBASIC-2.53□□□□□ -2.81
VPS28Q9UK41 SNORD60.1-201ENST00000362451 73 ntBASIC-2.54□□□□□ -2.82
VPS28Q9UK41 Y_RNA.321-201ENST00000365149 102 ntBASIC-2.55□□□□□ -2.82
VPS28Q9UK41 MIR125B1-201ENST00000385236 88 ntBASIC-2.55□□□□□ -2.82
VPS28Q9UK41 RNA5SP170-201ENST00000517150 101 ntBASIC-2.55□□□□□ -2.82
VPS28Q9UK41 Y_RNA.781-201ENST00000620301 103 ntBASIC-2.55□□□□□ -2.82
VPS28Q9UK41 RNA5SP93-201ENST00000362525 114 ntBASIC-2.56□□□□□ -2.82
VPS28Q9UK41 RNU7-160P-201ENST00000516660 62 ntBASIC-2.56□□□□□ -2.82
VPS28Q9UK41 Y_RNA.545-201ENST00000384652 105 ntBASIC-2.57□□□□□ -2.82
VPS28Q9UK41 MIR7110-201ENST00000612638 86 ntBASIC-2.58□□□□□ -2.82
VPS28Q9UK41 RNU6-563P-201ENST00000364872 108 ntBASIC-2.6□□□□□ -2.83
VPS28Q9UK41 RNU6-695P-201ENST00000391157 104 ntBASIC-2.6□□□□□ -2.83
VPS28Q9UK41 RNU6-523P-201ENST00000516304 54 ntBASIC-2.6□□□□□ -2.83
VPS28Q9UK41 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.6□□□□□ -2.83
VPS28Q9UK41 SNORA25.4-201ENST00000363666 124 ntBASIC-2.61□□□□□ -2.83
VPS28Q9UK41 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.61□□□□□ -2.83
VPS28Q9UK41 RNU6-871P-201ENST00000516122 100 ntBASIC-2.61□□□□□ -2.83
VPS28Q9UK41 SNORD73B-201ENST00000364394 72 ntBASIC-2.62□□□□□ -2.83
VPS28Q9UK41 MIR548AM-201ENST00000584298 74 ntBASIC-2.62□□□□□ -2.83
VPS28Q9UK41 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.63□□□□□ -2.83
VPS28Q9UK41 RNU4-88P-201ENST00000411220 86 ntBASIC-2.63□□□□□ -2.83
VPS28Q9UK41 RNU6-231P-201ENST00000517122 103 ntBASIC-2.63□□□□□ -2.83
VPS28Q9UK41 SNORD30.1-201ENST00000391309 70 ntBASIC-2.64□□□□□ -2.83
VPS28Q9UK41 RNU6-841P-201ENST00000383872 107 ntBASIC-2.65□□□□□ -2.83
VPS28Q9UK41 RNU6-1124P-201ENST00000384169 107 ntBASIC-2.65□□□□□ -2.83
VPS28Q9UK41 RNU6-1298P-201ENST00000362456 101 ntBASIC-2.66□□□□□ -2.84
VPS28Q9UK41 Y_RNA.53-201ENST00000362765 102 ntBASIC-2.66□□□□□ -2.84
VPS28Q9UK41 Y_RNA.139-201ENST00000363464 102 ntBASIC-2.66□□□□□ -2.84
VPS28Q9UK41 SNORA25.5-201ENST00000363782 126 ntBASIC-2.66□□□□□ -2.84
VPS28Q9UK41 RNU6-828P-201ENST00000364876 107 ntBASIC-2.66□□□□□ -2.84
VPS28Q9UK41 Y_RNA.421-201ENST00000384052 101 ntBASIC-2.66□□□□□ -2.84
VPS28Q9UK41 Y_RNA.69-201ENST00000362885 109 ntBASIC-2.67□□□□□ -2.84
VPS28Q9UK41 SNORA26.2-201ENST00000390922 122 ntBASIC-2.67□□□□□ -2.84
VPS28Q9UK41 RNU6-857P-201ENST00000515893 110 ntBASIC-2.67□□□□□ -2.84
Retrieved 100 of 98,524 protein–RNA pairs in 172.1 ms