Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MIR3910-1-201ENST00000580936 111 ntBASIC-3□□□□□ -2.89
HDDC3Q8N4P3 MIR5588-201ENST00000581890 63 ntBASIC-3□□□□□ -2.89
HDDC3Q8N4P3 Y_RNA.313-201ENST00000365095 103 ntBASIC-3.01□□□□□ -2.89
HDDC3Q8N4P3 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-3.01□□□□□ -2.89
HDDC3Q8N4P3 Y_RNA.186-201ENST00000363899 92 ntBASIC-3.02□□□□□ -2.89
HDDC3Q8N4P3 MIR579-201ENST00000385221 98 ntBASIC-3.02□□□□□ -2.89
HDDC3Q8N4P3 RNU6-258P-201ENST00000390884 101 ntBASIC-3.02□□□□□ -2.89
HDDC3Q8N4P3 RNU6-172P-201ENST00000411000 93 ntBASIC-3.02□□□□□ -2.89
HDDC3Q8N4P3 SNORD63.2-201ENST00000516303 64 ntBASIC-3.02□□□□□ -2.89
HDDC3Q8N4P3 RNU6-70P-201ENST00000516438 60 ntBASIC-3.02□□□□□ -2.89
HDDC3Q8N4P3 MT-TM-201ENST00000387377 68 ntBASIC-3.03□□□□□ -2.89
HDDC3Q8N4P3 SNORA27.2-201ENST00000363365 126 ntBASIC-3.04□□□□□ -2.9
HDDC3Q8N4P3 RNU6-1191P-201ENST00000516799 107 ntBASIC-3.05□□□□□ -2.9
HDDC3Q8N4P3 RNU6-789P-201ENST00000517105 102 ntBASIC-3.05□□□□□ -2.9
HDDC3Q8N4P3 RNU6-1131P-201ENST00000364955 107 ntBASIC-3.06□□□□□ -2.9
HDDC3Q8N4P3 RNU6-841P-201ENST00000383872 107 ntBASIC-3.06□□□□□ -2.9
HDDC3Q8N4P3 MIR3123-201ENST00000583417 75 ntBASIC-3.07□□□□□ -2.9
HDDC3Q8N4P3 RNU6-669P-201ENST00000365575 107 ntBASIC-3.08□□□□□ -2.9
HDDC3Q8N4P3 RNU6-979P-201ENST00000383896 107 ntBASIC-3.08□□□□□ -2.9
HDDC3Q8N4P3 MIR664B-201ENST00000626756 61 ntBASIC-3.08□□□□□ -2.9
HDDC3Q8N4P3 RNU6-1034P-201ENST00000365335 101 ntBASIC-3.09□□□□□ -2.9
HDDC3Q8N4P3 RNU6-919P-201ENST00000516731 104 ntBASIC-3.09□□□□□ -2.9
HDDC3Q8N4P3 MIR4712-201ENST00000583750 82 ntBASIC-3.1□□□□□ -2.91
HDDC3Q8N4P3 SNORD116-24-201ENST00000384549 92 ntBASIC-3.11□□□□□ -2.91
HDDC3Q8N4P3 AC108019.1-201ENST00000512540 175 ntBASIC-3.11□□□□□ -2.91
HDDC3Q8N4P3 MIR1245B-201ENST00000636115 69 ntBASIC-3.11□□□□□ -2.91
HDDC3Q8N4P3 Y_RNA.321-201ENST00000365149 102 ntBASIC-3.12□□□□□ -2.91
HDDC3Q8N4P3 MTRNR2L9-201ENST00000622562 75 ntBASIC-3.12□□□□□ -2.91
HDDC3Q8N4P3 MIR7978-201ENST00000636158 59 ntBASIC-3.12□□□□□ -2.91
HDDC3Q8N4P3 SNORD113-1-201ENST00000365321 69 ntBASIC-3.14□□□□□ -2.91
HDDC3Q8N4P3 RNU6-49P-201ENST00000384256 107 ntBASIC-3.14□□□□□ -2.91
HDDC3Q8N4P3 RNU7-171P-201ENST00000459581 62 ntBASIC-3.14□□□□□ -2.91
HDDC3Q8N4P3 RNU6-542P-201ENST00000516405 103 ntBASIC-3.14□□□□□ -2.91
HDDC3Q8N4P3 Y_RNA.291-201ENST00000364886 113 ntBASIC-3.16□□□□□ -2.92
HDDC3Q8N4P3 RNU6-215P-201ENST00000365169 102 ntBASIC-3.16□□□□□ -2.92
HDDC3Q8N4P3 SNORD20-201ENST00000384550 80 ntBASIC-3.16□□□□□ -2.92
HDDC3Q8N4P3 MIR548AM-201ENST00000584298 74 ntBASIC-3.16□□□□□ -2.92
HDDC3Q8N4P3 RNU6-523P-201ENST00000516304 54 ntBASIC-3.17□□□□□ -2.92
HDDC3Q8N4P3 RNU6-92P-201ENST00000605893 104 ntBASIC-3.17□□□□□ -2.92
HDDC3Q8N4P3 MIR125B1-201ENST00000385236 88 ntBASIC-3.18□□□□□ -2.92
HDDC3Q8N4P3 AL606753.1-201ENST00000427435 87 ntBASIC-3.18□□□□□ -2.92
HDDC3Q8N4P3 U6.97-201ENST00000636904 101 ntBASIC-3.18□□□□□ -2.92
HDDC3Q8N4P3 RNU6-242P-201ENST00000384359 107 ntBASIC-3.19□□□□□ -2.92
HDDC3Q8N4P3 AC013734.1-201ENST00000619329 111 ntBASIC-3.19□□□□□ -2.92
HDDC3Q8N4P3 SNORD115-31-201ENST00000365318 82 ntBASIC-3.2□□□□□ -2.92
HDDC3Q8N4P3 MIR4756-201ENST00000577874 78 ntBASIC-3.2□□□□□ -2.92
HDDC3Q8N4P3 AC005520.4-201ENST00000604337 90 ntBASIC-3.21□□□□□ -2.92
HDDC3Q8N4P3 RNU7-160P-201ENST00000516660 62 ntBASIC-3.22□□□□□ -2.92
HDDC3Q8N4P3 Y_RNA.449-201ENST00000384187 102 ntBASIC-3.23□□□□□ -2.93
HDDC3Q8N4P3 RNY3P8-201ENST00000411366 126 ntBASIC-3.23□□□□□ -2.93
HDDC3Q8N4P3 RNA5SP89-201ENST00000410300 108 ntBASIC-3.24□□□□□ -2.93
HDDC3Q8N4P3 VTRNA2-1-201ENST00000602301 127 ntBASIC-3.24□□□□□ -2.93
HDDC3Q8N4P3 SNORD19B.1-201ENST00000630615 80 ntBASIC-3.24□□□□□ -2.93
HDDC3Q8N4P3 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-3.24□□□□□ -2.93
HDDC3Q8N4P3 Y_RNA.139-201ENST00000363464 102 ntBASIC-3.25□□□□□ -2.93
HDDC3Q8N4P3 Y_RNA.564-201ENST00000384708 106 ntBASIC-3.25□□□□□ -2.93
HDDC3Q8N4P3 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-3.25□□□□□ -2.93
HDDC3Q8N4P3 MIR3134-201ENST00000579433 74 ntBASIC-3.25□□□□□ -2.93
HDDC3Q8N4P3 RNY4P30-201ENST00000410216 95 ntBASIC-3.26□□□□□ -2.93
HDDC3Q8N4P3 RNU6-1121P-201ENST00000516802 109 ntBASIC-3.26□□□□□ -2.93
HDDC3Q8N4P3 MIR548AI-201ENST00000579940 88 ntBASIC-3.26□□□□□ -2.93
HDDC3Q8N4P3 MIR7110-201ENST00000612638 86 ntBASIC-3.26□□□□□ -2.93
HDDC3Q8N4P3 Y_RNA.788-201ENST00000622394 112 ntBASIC-3.27□□□□□ -2.93
HDDC3Q8N4P3 MIR494-201ENST00000349529 81 ntBASIC-3.28□□□□□ -2.93
HDDC3Q8N4P3 RNA5SP405-201ENST00000363059 114 ntBASIC-3.28□□□□□ -2.93
HDDC3Q8N4P3 RNU6-828P-201ENST00000364876 107 ntBASIC-3.28□□□□□ -2.93
HDDC3Q8N4P3 Y_RNA.284-201ENST00000364806 102 ntBASIC-3.29□□□□□ -2.94
HDDC3Q8N4P3 RNU6-687P-201ENST00000516443 89 ntBASIC-3.29□□□□□ -2.94
HDDC3Q8N4P3 Y_RNA.94-201ENST00000363068 106 ntBASIC-3.3□□□□□ -2.94
HDDC3Q8N4P3 RNU6-1276P-201ENST00000365372 104 ntBASIC-3.3□□□□□ -2.94
HDDC3Q8N4P3 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-3.3□□□□□ -2.94
HDDC3Q8N4P3 SNORD60.1-201ENST00000362451 73 ntBASIC-3.31□□□□□ -2.94
HDDC3Q8N4P3 Y_RNA.69-201ENST00000362885 109 ntBASIC-3.31□□□□□ -2.94
HDDC3Q8N4P3 RNU6-44P-201ENST00000384045 107 ntBASIC-3.31□□□□□ -2.94
HDDC3Q8N4P3 Y_RNA.566-201ENST00000384735 101 ntBASIC-3.31□□□□□ -2.94
HDDC3Q8N4P3 RNU6-974P-201ENST00000384099 108 ntBASIC-3.32□□□□□ -2.94
HDDC3Q8N4P3 RNU6-411P-201ENST00000384451 107 ntBASIC-3.32□□□□□ -2.94
HDDC3Q8N4P3 RNU6-520P-201ENST00000384717 104 ntBASIC-3.32□□□□□ -2.94
HDDC3Q8N4P3 SNORD18C-201ENST00000362704 69 ntBASIC-3.33□□□□□ -2.94
HDDC3Q8N4P3 MIR450A2-201ENST00000385022 100 ntBASIC-3.34□□□□□ -2.94
HDDC3Q8N4P3 RNU4-88P-201ENST00000411220 86 ntBASIC-3.34□□□□□ -2.94
HDDC3Q8N4P3 RNU6-231P-201ENST00000517122 103 ntBASIC-3.35□□□□□ -2.95
HDDC3Q8N4P3 RNU6-810P-201ENST00000364001 107 ntBASIC-3.36□□□□□ -2.95
HDDC3Q8N4P3 SNORD60-201ENST00000383903 83 ntBASIC-3.36□□□□□ -2.95
HDDC3Q8N4P3 SNORD116.2-201ENST00000391251 93 ntBASIC-3.36□□□□□ -2.95
HDDC3Q8N4P3 MIR4666B-201ENST00000578142 81 ntBASIC-3.36□□□□□ -2.95
HDDC3Q8N4P3 RNU6-1079P-201ENST00000362861 110 ntBASIC-3.38□□□□□ -2.95
HDDC3Q8N4P3 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-3.38□□□□□ -2.95
HDDC3Q8N4P3 TARS-215ENST00000626210 201 ntTSL 5 BASIC-3.38□□□□□ -2.95
HDDC3Q8N4P3 RNU6-649P-201ENST00000384463 107 ntBASIC-3.39□□□□□ -2.95
HDDC3Q8N4P3 Y_RNA.443-201ENST00000384135 111 ntBASIC-3.4□□□□□ -2.95
HDDC3Q8N4P3 Y_RNA.591-201ENST00000410228 104 ntBASIC-3.42□□□□□ -2.96
HDDC3Q8N4P3 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-3.42□□□□□ -2.96
HDDC3Q8N4P3 RNU6-1015P-201ENST00000517121 99 ntBASIC-3.42□□□□□ -2.96
HDDC3Q8N4P3 MIR202-201ENST00000362219 110 ntBASIC-3.43□□□□□ -2.96
HDDC3Q8N4P3 U7.4-201ENST00000614961 63 ntBASIC-3.43□□□□□ -2.96
HDDC3Q8N4P3 RNU6-194P-201ENST00000363862 105 ntBASIC-3.44□□□□□ -2.96
HDDC3Q8N4P3 RNU6-663P-201ENST00000391105 106 ntBASIC-3.44□□□□□ -2.96
HDDC3Q8N4P3 RNU6-1206P-201ENST00000516339 103 ntBASIC-3.45□□□□□ -2.96
HDDC3Q8N4P3 RNU6-294P-201ENST00000364999 102 ntBASIC-3.46□□□□□ -2.96
Retrieved 100 of 98,524 protein–RNA pairs in 196 ms