Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SNORD116-14-201ENST00000383894 92 ntBASIC-2.27□□□□□ -2.77
FOXA3P55318 SNORD116-17-201ENST00000383929 92 ntBASIC-2.27□□□□□ -2.77
FOXA3P55318 SNORD116-15-201ENST00000384445 92 ntBASIC-2.27□□□□□ -2.77
FOXA3P55318 SNORD116-24-201ENST00000384549 92 ntBASIC-2.27□□□□□ -2.77
FOXA3P55318 SNORD116-19-201ENST00000384729 92 ntBASIC-2.27□□□□□ -2.77
FOXA3P55318 RNU6-530P-201ENST00000391180 107 ntBASIC-2.27□□□□□ -2.77
FOXA3P55318 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-2.27□□□□□ -2.77
FOXA3P55318 SNX3P1Y-201ENST00000615757 176 ntBASIC-2.27□□□□□ -2.77
FOXA3P55318 RNU6-895P-201ENST00000384125 103 ntBASIC-2.28□□□□□ -2.77
FOXA3P55318 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-2.28□□□□□ -2.77
FOXA3P55318 SNORD54-201ENST00000459159 67 ntBASIC-2.28□□□□□ -2.77
FOXA3P55318 RNU6-92P-201ENST00000605893 104 ntBASIC-2.28□□□□□ -2.77
FOXA3P55318 AC006160.2-201ENST00000637708 154 ntBASIC-2.28□□□□□ -2.77
FOXA3P55318 RNU6-1241P-201ENST00000384536 107 ntBASIC-2.29□□□□□ -2.78
FOXA3P55318 Y_RNA.519-201ENST00000384553 102 ntBASIC-2.29□□□□□ -2.78
FOXA3P55318 SNORD116.2-201ENST00000391251 93 ntBASIC-2.29□□□□□ -2.78
FOXA3P55318 RNU6-1296P-201ENST00000383879 107 ntBASIC-2.3□□□□□ -2.78
FOXA3P55318 MIR379-201ENST00000362218 67 ntBASIC-2.31□□□□□ -2.78
FOXA3P55318 Y_RNA.506-201ENST00000384494 102 ntBASIC-2.31□□□□□ -2.78
FOXA3P55318 MIR154-201ENST00000385243 84 ntBASIC-2.31□□□□□ -2.78
FOXA3P55318 RNU6-1206P-201ENST00000516339 103 ntBASIC-2.31□□□□□ -2.78
FOXA3P55318 RNU6-231P-201ENST00000517122 103 ntBASIC-2.31□□□□□ -2.78
FOXA3P55318 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-2.31□□□□□ -2.78
FOXA3P55318 MALAT1.1-201ENST00000618249 95 ntBASIC-2.31□□□□□ -2.78
FOXA3P55318 RNU6-834P-201ENST00000362367 110 ntBASIC-2.32□□□□□ -2.78
FOXA3P55318 SNORD60.1-201ENST00000362451 73 ntBASIC-2.32□□□□□ -2.78
FOXA3P55318 MIR548AJ2-201ENST00000408539 92 ntBASIC-2.32□□□□□ -2.78
FOXA3P55318 RNU6-542P-201ENST00000516405 103 ntBASIC-2.32□□□□□ -2.78
FOXA3P55318 RNU6-230P-201ENST00000362457 104 ntBASIC-2.33□□□□□ -2.78
FOXA3P55318 Y_RNA.228-201ENST00000364346 98 ntBASIC-2.33□□□□□ -2.78
FOXA3P55318 RNU6-70P-201ENST00000516438 60 ntBASIC-2.33□□□□□ -2.78
FOXA3P55318 MIR548AI-201ENST00000579940 88 ntBASIC-2.33□□□□□ -2.78
FOXA3P55318 MIR4426-201ENST00000640330 63 ntBASIC-2.33□□□□□ -2.78
FOXA3P55318 RNU6-68P-201ENST00000516576 104 ntBASIC-2.34□□□□□ -2.78
FOXA3P55318 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.35□□□□□ -2.79
FOXA3P55318 Y_RNA.261-201ENST00000364631 102 ntBASIC-2.35□□□□□ -2.79
FOXA3P55318 RNY1P5-201ENST00000383890 115 ntBASIC-2.35□□□□□ -2.79
FOXA3P55318 RNU6-463P-201ENST00000384340 107 ntBASIC-2.35□□□□□ -2.79
FOXA3P55318 AL117351.2-201ENST00000513571 157 ntBASIC-2.35□□□□□ -2.79
FOXA3P55318 RNU6-1045P-201ENST00000516321 107 ntBASIC-2.35□□□□□ -2.79
FOXA3P55318 RNU6-255P-201ENST00000516957 105 ntBASIC-2.35□□□□□ -2.79
FOXA3P55318 MIR450A1-201ENST00000362262 91 ntBASIC-2.36□□□□□ -2.79
FOXA3P55318 RNU6-315P-201ENST00000362666 107 ntBASIC-2.36□□□□□ -2.79
FOXA3P55318 MIR1254-1-201ENST00000408257 97 ntBASIC-2.36□□□□□ -2.79
FOXA3P55318 RNU6-300P-201ENST00000459080 104 ntBASIC-2.36□□□□□ -2.79
FOXA3P55318 Y_RNA.434-201ENST00000384090 100 ntBASIC-2.37□□□□□ -2.79
FOXA3P55318 SNORA40B-201ENST00000385573 128 ntBASIC-2.37□□□□□ -2.79
FOXA3P55318 Y_RNA.607-201ENST00000410597 98 ntBASIC-2.37□□□□□ -2.79
FOXA3P55318 SNORA40.13-201ENST00000516379 120 ntBASIC-2.37□□□□□ -2.79
FOXA3P55318 Y_RNA.129-201ENST00000363392 110 ntBASIC-2.38□□□□□ -2.79
FOXA3P55318 SNORD45.2-201ENST00000363552 72 ntBASIC-2.38□□□□□ -2.79
FOXA3P55318 RNU6-590P-201ENST00000365039 107 ntBASIC-2.38□□□□□ -2.79
FOXA3P55318 Y_RNA.397-201ENST00000383950 98 ntBASIC-2.38□□□□□ -2.79
FOXA3P55318 Y_RNA.464-201ENST00000384282 110 ntBASIC-2.38□□□□□ -2.79
FOXA3P55318 AL031737.1-201ENST00000450125 223 ntBASIC-2.38□□□□□ -2.79
FOXA3P55318 RNU6-675P-201ENST00000384236 104 ntBASIC-2.39□□□□□ -2.79
FOXA3P55318 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-2.39□□□□□ -2.79
FOXA3P55318 RNU6-1212P-201ENST00000517023 104 ntBASIC-2.39□□□□□ -2.79
FOXA3P55318 Y_RNA.320-201ENST00000365144 102 ntBASIC-2.4□□□□□ -2.79
FOXA3P55318 Y_RNA.443-201ENST00000384135 111 ntBASIC-2.4□□□□□ -2.79
FOXA3P55318 RNU6-589P-201ENST00000516485 107 ntBASIC-2.4□□□□□ -2.79
FOXA3P55318 TMSB4XP3-201ENST00000445144 114 ntBASIC-2.41□□□□□ -2.8
FOXA3P55318 RNU6-176P-201ENST00000517196 105 ntBASIC-2.41□□□□□ -2.8
FOXA3P55318 AL451105.1-201ENST00000450005 189 ntBASIC-2.42□□□□□ -2.8
FOXA3P55318 snoMBII-202.2-201ENST00000517263 86 ntBASIC-2.42□□□□□ -2.8
FOXA3P55318 Y_RNA.59-201ENST00000362828 102 ntBASIC-2.43□□□□□ -2.8
FOXA3P55318 Y_RNA.316-201ENST00000365118 111 ntBASIC-2.43□□□□□ -2.8
FOXA3P55318 MT-TG-201ENST00000387429 68 ntBASIC-2.43□□□□□ -2.8
FOXA3P55318 RNU6-844P-201ENST00000517175 102 ntBASIC-2.43□□□□□ -2.8
FOXA3P55318 SNORA40.16-201ENST00000517238 121 ntBASIC-2.43□□□□□ -2.8
FOXA3P55318 Y_RNA.17-201ENST00000362433 111 ntBASIC-2.44□□□□□ -2.8
FOXA3P55318 Y_RNA.73-201ENST00000362910 113 ntBASIC-2.44□□□□□ -2.8
FOXA3P55318 Y_RNA.273-201ENST00000364703 102 ntBASIC-2.44□□□□□ -2.8
FOXA3P55318 MIR488-201ENST00000365739 83 ntBASIC-2.44□□□□□ -2.8
FOXA3P55318 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-2.44□□□□□ -2.8
FOXA3P55318 RNA5SP93-201ENST00000362525 114 ntBASIC-2.46□□□□□ -2.8
FOXA3P55318 Y_RNA.63-201ENST00000362841 102 ntBASIC-2.46□□□□□ -2.8
FOXA3P55318 RNY4P7-201ENST00000364600 96 ntBASIC-2.46□□□□□ -2.8
FOXA3P55318 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.46□□□□□ -2.8
FOXA3P55318 RNU6-1056P-201ENST00000383996 107 ntBASIC-2.46□□□□□ -2.8
FOXA3P55318 Y_RNA.788-201ENST00000622394 112 ntBASIC-2.46□□□□□ -2.8
FOXA3P55318 AC008267.6-201ENST00000441664 139 ntBASIC-2.47□□□□□ -2.8
FOXA3P55318 RNU6-345P-201ENST00000517001 107 ntBASIC-2.47□□□□□ -2.8
FOXA3P55318 MIR3134-201ENST00000579433 74 ntBASIC-2.47□□□□□ -2.8
FOXA3P55318 IGLL4P-201ENST00000614590 133 ntBASIC-2.47□□□□□ -2.8
FOXA3P55318 RNU6-687P-201ENST00000516443 89 ntBASIC-2.48□□□□□ -2.81
FOXA3P55318 Y_RNA.709-201ENST00000516952 92 ntBASIC-2.48□□□□□ -2.81
FOXA3P55318 RNU6-1015P-201ENST00000517121 99 ntBASIC-2.48□□□□□ -2.81
FOXA3P55318 Y_RNA.53-201ENST00000362765 102 ntBASIC-2.49□□□□□ -2.81
FOXA3P55318 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.49□□□□□ -2.81
FOXA3P55318 RNU6-1134P-201ENST00000365156 101 ntBASIC-2.49□□□□□ -2.81
FOXA3P55318 RNY4P25-201ENST00000459254 96 ntBASIC-2.49□□□□□ -2.81
FOXA3P55318 RNU7-119P-201ENST00000459279 63 ntBASIC-2.49□□□□□ -2.81
FOXA3P55318 SCARNA15.1-201ENST00000516384 125 ntBASIC-2.49□□□□□ -2.81
FOXA3P55318 MIR5588-201ENST00000581890 63 ntBASIC-2.49□□□□□ -2.81
FOXA3P55318 AL365222.1-201ENST00000614661 98 ntBASIC-2.49□□□□□ -2.81
FOXA3P55318 SNORA25.5-201ENST00000363782 126 ntBASIC-2.5□□□□□ -2.81
FOXA3P55318 RNU6-742P-201ENST00000365289 107 ntBASIC-2.5□□□□□ -2.81
FOXA3P55318 RNU6-1011P-201ENST00000384668 107 ntBASIC-2.5□□□□□ -2.81
FOXA3P55318 RNU6-959P-201ENST00000384671 107 ntBASIC-2.5□□□□□ -2.81
Retrieved 100 of 98,524 protein–RNA pairs in 167.6 ms