Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MIR494-201ENST00000349529 81 ntBASIC-1.08□□□□□ -2.58
CTCFP49711 RNY4P7-201ENST00000364600 96 ntBASIC-1.08□□□□□ -2.58
CTCFP49711 RNU6-563P-201ENST00000364872 108 ntBASIC-1.08□□□□□ -2.58
CTCFP49711 RNU6-542P-201ENST00000516405 103 ntBASIC-1.08□□□□□ -2.58
CTCFP49711 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.08□□□□□ -2.58
CTCFP49711 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.09□□□□□ -2.58
CTCFP49711 RNU6-669P-201ENST00000365575 107 ntBASIC-1.09□□□□□ -2.58
CTCFP49711 RNU6-172P-201ENST00000411000 93 ntBASIC-1.09□□□□□ -2.58
CTCFP49711 AC120024.2-201ENST00000576526 175 ntBASIC-1.09□□□□□ -2.58
CTCFP49711 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.09□□□□□ -2.58
CTCFP49711 RNU6-294P-201ENST00000364999 102 ntBASIC-1.1□□□□□ -2.59
CTCFP49711 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.1□□□□□ -2.59
CTCFP49711 AC005520.4-201ENST00000604337 90 ntBASIC-1.1□□□□□ -2.59
CTCFP49711 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.1□□□□□ -2.59
CTCFP49711 SNORA27.2-201ENST00000363365 126 ntBASIC-1.11□□□□□ -2.59
CTCFP49711 RNU6-895P-201ENST00000384125 103 ntBASIC-1.11□□□□□ -2.59
CTCFP49711 RNU6-242P-201ENST00000384359 107 ntBASIC-1.11□□□□□ -2.59
CTCFP49711 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.11□□□□□ -2.59
CTCFP49711 RNU6-523P-201ENST00000516304 54 ntBASIC-1.11□□□□□ -2.59
CTCFP49711 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.11□□□□□ -2.59
CTCFP49711 RNU6-92P-201ENST00000605893 104 ntBASIC-1.11□□□□□ -2.59
CTCFP49711 RNU6-247P-201ENST00000362636 107 ntBASIC-1.12□□□□□ -2.59
CTCFP49711 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.12□□□□□ -2.59
CTCFP49711 RNU6-411P-201ENST00000384451 107 ntBASIC-1.12□□□□□ -2.59
CTCFP49711 RNU6-695P-201ENST00000391157 104 ntBASIC-1.12□□□□□ -2.59
CTCFP49711 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.12□□□□□ -2.59
CTCFP49711 SNORD60.1-201ENST00000362451 73 ntBASIC-1.13□□□□□ -2.59
CTCFP49711 RNU6-820P-201ENST00000384273 107 ntBASIC-1.13□□□□□ -2.59
CTCFP49711 RNU6-540P-201ENST00000384622 101 ntBASIC-1.13□□□□□ -2.59
CTCFP49711 MIR579-201ENST00000385221 98 ntBASIC-1.13□□□□□ -2.59
CTCFP49711 RNU6-995P-201ENST00000391244 107 ntBASIC-1.13□□□□□ -2.59
CTCFP49711 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.13□□□□□ -2.59
CTCFP49711 AC062037.1-201ENST00000605302 128 ntBASIC-1.13□□□□□ -2.59
CTCFP49711 RNU6-226P-201ENST00000363778 107 ntBASIC-1.14□□□□□ -2.59
CTCFP49711 RNU6-974P-201ENST00000384099 108 ntBASIC-1.14□□□□□ -2.59
CTCFP49711 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.14□□□□□ -2.59
CTCFP49711 MIR548H1-201ENST00000408610 102 ntBASIC-1.14□□□□□ -2.59
CTCFP49711 RNU6-634P-201ENST00000459134 106 ntBASIC-1.14□□□□□ -2.59
CTCFP49711 SNORD63.2-201ENST00000516303 64 ntBASIC-1.14□□□□□ -2.59
CTCFP49711 RNU7-160P-201ENST00000516660 62 ntBASIC-1.14□□□□□ -2.59
CTCFP49711 MIR5582-201ENST00000579697 68 ntBASIC-1.14□□□□□ -2.59
CTCFP49711 AC013734.1-201ENST00000619329 111 ntBASIC-1.14□□□□□ -2.59
CTCFP49711 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.15□□□□□ -2.59
CTCFP49711 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.15□□□□□ -2.59
CTCFP49711 MIR487B-201ENST00000385021 84 ntBASIC-1.15□□□□□ -2.59
CTCFP49711 MIR3123-201ENST00000583417 75 ntBASIC-1.15□□□□□ -2.59
CTCFP49711 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.16□□□□□ -2.6
CTCFP49711 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.16□□□□□ -2.6
CTCFP49711 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.16□□□□□ -2.6
CTCFP49711 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.17□□□□□ -2.6
CTCFP49711 RNU6-841P-201ENST00000383872 107 ntBASIC-1.17□□□□□ -2.6
CTCFP49711 RNU6-231P-201ENST00000517122 103 ntBASIC-1.17□□□□□ -2.6
CTCFP49711 U7.4-201ENST00000614961 63 ntBASIC-1.17□□□□□ -2.6
CTCFP49711 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.18□□□□□ -2.6
CTCFP49711 RNY3P8-201ENST00000411366 126 ntBASIC-1.18□□□□□ -2.6
CTCFP49711 RNU6-122P-201ENST00000516818 107 ntBASIC-1.19□□□□□ -2.6
CTCFP49711 MIR7110-201ENST00000612638 86 ntBASIC-1.19□□□□□ -2.6
CTCFP49711 RNU6-663P-201ENST00000391105 106 ntBASIC-1.2□□□□□ -2.6
CTCFP49711 RNU6-1298P-201ENST00000362456 101 ntBASIC-1.21□□□□□ -2.6
CTCFP49711 SNORA25.4-201ENST00000363666 124 ntBASIC-1.21□□□□□ -2.6
CTCFP49711 SNORA25.5-201ENST00000363782 126 ntBASIC-1.21□□□□□ -2.6
CTCFP49711 RNU6-810P-201ENST00000364001 107 ntBASIC-1.21□□□□□ -2.6
CTCFP49711 RNU6-828P-201ENST00000364876 107 ntBASIC-1.21□□□□□ -2.6
CTCFP49711 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.21□□□□□ -2.6
CTCFP49711 MIR548AM-201ENST00000584298 74 ntBASIC-1.21□□□□□ -2.6
CTCFP49711 AC108019.1-201ENST00000512540 175 ntBASIC-1.22□□□□□ -2.6
CTCFP49711 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.22□□□□□ -2.6
CTCFP49711 SNORA40.16-201ENST00000517238 121 ntBASIC-1.22□□□□□ -2.6
CTCFP49711 MIR3202-2-201ENST00000635980 79 ntBASIC-1.22□□□□□ -2.6
CTCFP49711 SNORD18.1-201ENST00000363807 70 ntBASIC-1.23□□□□□ -2.61
CTCFP49711 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.23□□□□□ -2.61
CTCFP49711 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.23□□□□□ -2.61
CTCFP49711 MIR581-201ENST00000384895 96 ntBASIC-1.23□□□□□ -2.61
CTCFP49711 SNORA40B-201ENST00000385573 128 ntBASIC-1.23□□□□□ -2.61
CTCFP49711 RNU6-279P-201ENST00000391297 101 ntBASIC-1.23□□□□□ -2.61
CTCFP49711 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.23□□□□□ -2.61
CTCFP49711 RNU6-520P-201ENST00000384717 104 ntBASIC-1.24□□□□□ -2.61
CTCFP49711 RNU6-228P-201ENST00000362700 106 ntBASIC-1.25□□□□□ -2.61
CTCFP49711 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.25□□□□□ -2.61
CTCFP49711 MIR548N-201ENST00000408742 75 ntBASIC-1.25□□□□□ -2.61
CTCFP49711 RNU6-857P-201ENST00000515893 110 ntBASIC-1.25□□□□□ -2.61
CTCFP49711 MIR4511-201ENST00000582784 87 ntBASIC-1.25□□□□□ -2.61
CTCFP49711 SNORD18C-201ENST00000362704 69 ntBASIC-1.26□□□□□ -2.61
CTCFP49711 RNU6-361P-201ENST00000364454 107 ntBASIC-1.26□□□□□ -2.61
CTCFP49711 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.26□□□□□ -2.61
CTCFP49711 SNORD116.2-201ENST00000391251 93 ntBASIC-1.26□□□□□ -2.61
CTCFP49711 MIR548W-201ENST00000581970 74 ntBASIC-1.26□□□□□ -2.61
CTCFP49711 U6.97-201ENST00000636904 101 ntBASIC-1.26□□□□□ -2.61
CTCFP49711 SNORD73B-201ENST00000364394 72 ntBASIC-1.27□□□□□ -2.61
CTCFP49711 MIR4756-201ENST00000577874 78 ntBASIC-1.27□□□□□ -2.61
CTCFP49711 MIR202-201ENST00000362219 110 ntBASIC-1.28□□□□□ -2.61
CTCFP49711 Y_RNA.388-201ENST00000383919 113 ntBASIC-1.28□□□□□ -2.61
CTCFP49711 RNU6-1124P-201ENST00000384169 107 ntBASIC-1.28□□□□□ -2.61
CTCFP49711 MIR1255A-201ENST00000408338 113 ntBASIC-1.28□□□□□ -2.61
CTCFP49711 RNA5SP170-201ENST00000517150 101 ntBASIC-1.28□□□□□ -2.61
CTCFP49711 MIR664B-201ENST00000626756 61 ntBASIC-1.28□□□□□ -2.61
CTCFP49711 U6.111-201ENST00000636093 83 ntBASIC-1.28□□□□□ -2.61
CTCFP49711 AC103706.3-201ENST00000636297 85 ntBASIC-1.28□□□□□ -2.61
CTCFP49711 RNU6-573P-201ENST00000383938 106 ntBASIC-1.29□□□□□ -2.62
CTCFP49711 SNORD30.1-201ENST00000391309 70 ntBASIC-1.29□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms