Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 SNORD60.1-201ENST00000362451 73 ntBASIC-1.61□□□□□ -2.67
MSH2P43246 MIR889-201ENST00000401280 79 ntBASIC-1.61□□□□□ -2.67
MSH2P43246 RNU7-151P-201ENST00000516930 53 ntBASIC-1.61□□□□□ -2.67
MSH2P43246 MIR198-201ENST00000637333 62 ntBASIC-1.62□□□□□ -2.67
MSH2P43246 RNU6-247P-201ENST00000362636 107 ntBASIC-1.63□□□□□ -2.67
MSH2P43246 RNU6-706P-201ENST00000517229 104 ntBASIC-1.63□□□□□ -2.67
MSH2P43246 RNU6-649P-201ENST00000384463 107 ntBASIC-1.64□□□□□ -2.67
MSH2P43246 MIR601-201ENST00000385256 79 ntBASIC-1.64□□□□□ -2.67
MSH2P43246 RNA5SP461-201ENST00000516451 104 ntBASIC-1.64□□□□□ -2.67
MSH2P43246 AC091912.2-201ENST00000624798 167 ntBASIC-1.64□□□□□ -2.67
MSH2P43246 MIR579-201ENST00000385221 98 ntBASIC-1.65□□□□□ -2.67
MSH2P43246 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.66□□□□□ -2.68
MSH2P43246 MIR23C-201ENST00000579846 100 ntBASIC-1.66□□□□□ -2.68
MSH2P43246 MIR7978-201ENST00000636158 59 ntBASIC-1.66□□□□□ -2.68
MSH2P43246 SNORA25.5-201ENST00000363782 126 ntBASIC-1.67□□□□□ -2.68
MSH2P43246 AC018880.2-201ENST00000414265 201 ntBASIC-1.67□□□□□ -2.68
MSH2P43246 RNU6-539P-201ENST00000516665 103 ntBASIC-1.67□□□□□ -2.68
MSH2P43246 AC005520.4-201ENST00000604337 90 ntBASIC-1.67□□□□□ -2.68
MSH2P43246 U6.111-201ENST00000636093 83 ntBASIC-1.67□□□□□ -2.68
MSH2P43246 MIR1468-201ENST00000410600 86 ntBASIC-1.68□□□□□ -2.68
MSH2P43246 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.68□□□□□ -2.68
MSH2P43246 MIR6874-201ENST00000635894 71 ntBASIC-1.68□□□□□ -2.68
MSH2P43246 MIR4662A-201ENST00000637499 67 ntBASIC-1.69□□□□□ -2.68
MSH2P43246 RNU6-122P-201ENST00000516818 107 ntBASIC-1.7□□□□□ -2.68
MSH2P43246 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.7□□□□□ -2.68
MSH2P43246 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.7□□□□□ -2.68
MSH2P43246 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.71□□□□□ -2.68
MSH2P43246 MIR125B1-201ENST00000385236 88 ntBASIC-1.71□□□□□ -2.68
MSH2P43246 RNU6-258P-201ENST00000390884 101 ntBASIC-1.71□□□□□ -2.68
MSH2P43246 MIR4511-201ENST00000582784 87 ntBASIC-1.71□□□□□ -2.68
MSH2P43246 AC138207.3-201ENST00000585289 166 ntBASIC-1.71□□□□□ -2.68
MSH2P43246 MIR7110-201ENST00000612638 86 ntBASIC-1.71□□□□□ -2.68
MSH2P43246 RNU6-776P-201ENST00000364403 104 ntBASIC-1.72□□□□□ -2.68
MSH2P43246 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.72□□□□□ -2.68
MSH2P43246 Y_RNA.565-201ENST00000384719 101 ntBASIC-1.72□□□□□ -2.68
MSH2P43246 RNU6-231P-201ENST00000517122 103 ntBASIC-1.72□□□□□ -2.68
MSH2P43246 RNU6-669P-201ENST00000365575 107 ntBASIC-1.73□□□□□ -2.69
MSH2P43246 MIR8485-201ENST00000401372 91 ntBASIC-1.73□□□□□ -2.69
MSH2P43246 SNORD63.2-201ENST00000516303 64 ntBASIC-1.73□□□□□ -2.69
MSH2P43246 Y_RNA.685-201ENST00000516532 108 ntBASIC-1.73□□□□□ -2.69
MSH2P43246 RNU7-160P-201ENST00000516660 62 ntBASIC-1.73□□□□□ -2.69
MSH2P43246 AC103706.3-201ENST00000636297 85 ntBASIC-1.73□□□□□ -2.69
MSH2P43246 RNU6-79P-201ENST00000362511 107 ntBASIC-1.75□□□□□ -2.69
MSH2P43246 SNORA27.2-201ENST00000363365 126 ntBASIC-1.75□□□□□ -2.69
MSH2P43246 HLA-S-202ENST00000425174 53 ntBASIC-1.76□□□□□ -2.69
MSH2P43246 RNU6-810P-201ENST00000364001 107 ntBASIC-1.79□□□□□ -2.7
MSH2P43246 RNU6-800P-201ENST00000384473 103 ntBASIC-1.79□□□□□ -2.7
MSH2P43246 SNORD116.2-201ENST00000391251 93 ntBASIC-1.79□□□□□ -2.7
MSH2P43246 RNA5SP180-201ENST00000516181 101 ntBASIC-1.79□□□□□ -2.7
MSH2P43246 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.8□□□□□ -2.7
MSH2P43246 RNU6-400P-201ENST00000391173 106 ntBASIC-1.8□□□□□ -2.7
MSH2P43246 MIR6502-201ENST00000617296 76 ntBASIC-1.8□□□□□ -2.7
MSH2P43246 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.81□□□□□ -2.7
MSH2P43246 RNU6-940P-201ENST00000363433 104 ntBASIC-1.81□□□□□ -2.7
MSH2P43246 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.81□□□□□ -2.7
MSH2P43246 MIR1285-2-201ENST00000408311 88 ntBASIC-1.81□□□□□ -2.7
MSH2P43246 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.82□□□□□ -2.7
MSH2P43246 AC120024.2-201ENST00000576526 175 ntBASIC-1.82□□□□□ -2.7
MSH2P43246 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.82□□□□□ -2.7
MSH2P43246 RNU6-828P-201ENST00000364876 107 ntBASIC-1.83□□□□□ -2.7
MSH2P43246 MIR365A-201ENST00000362260 87 ntBASIC-1.84□□□□□ -2.7
MSH2P43246 RNU7-119P-201ENST00000459279 63 ntBASIC-1.84□□□□□ -2.7
MSH2P43246 RNU6-974P-201ENST00000384099 108 ntBASIC-1.85□□□□□ -2.71
MSH2P43246 SNORA40B-201ENST00000385573 128 ntBASIC-1.85□□□□□ -2.71
MSH2P43246 RNU6-1275P-201ENST00000391087 107 ntBASIC-1.86□□□□□ -2.71
MSH2P43246 MIR1246-201ENST00000636535 73 ntBASIC-1.87□□□□□ -2.71
MSH2P43246 RNU6-563P-201ENST00000364872 108 ntBASIC-1.88□□□□□ -2.71
MSH2P43246 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.88□□□□□ -2.71
MSH2P43246 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.88□□□□□ -2.71
MSH2P43246 MIR4441-201ENST00000582623 100 ntBASIC-1.88□□□□□ -2.71
MSH2P43246 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.88□□□□□ -2.71
MSH2P43246 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.88□□□□□ -2.71
MSH2P43246 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.88□□□□□ -2.71
MSH2P43246 RNU6-226P-201ENST00000363778 107 ntBASIC-1.89□□□□□ -2.71
MSH2P43246 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.89□□□□□ -2.71
MSH2P43246 SNORA40.16-201ENST00000517238 121 ntBASIC-1.89□□□□□ -2.71
MSH2P43246 MIR5591-201ENST00000578248 65 ntBASIC-1.89□□□□□ -2.71
MSH2P43246 MIR4520-1-201ENST00000582609 70 ntBASIC-1.89□□□□□ -2.71
MSH2P43246 MIR466-201ENST00000580653 84 ntBASIC-1.9□□□□□ -2.71
MSH2P43246 MIR3938-201ENST00000582157 103 ntBASIC-1.9□□□□□ -2.71
MSH2P43246 U4.2-201ENST00000618561 85 ntBASIC-1.9□□□□□ -2.71
MSH2P43246 AC110620.1-201ENST00000416042 228 ntBASIC-1.92□□□□□ -2.72
MSH2P43246 MIR4723-201ENST00000585070 81 ntBASIC-1.93□□□□□ -2.72
MSH2P43246 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.94□□□□□ -2.72
MSH2P43246 RNY3P8-201ENST00000411366 126 ntBASIC-1.94□□□□□ -2.72
MSH2P43246 AC114801.3-201ENST00000510231 177 ntBASIC-1.94□□□□□ -2.72
MSH2P43246 SNORA72.7-201ENST00000516349 94 ntBASIC-1.94□□□□□ -2.72
MSH2P43246 MIR4770-201ENST00000579149 58 ntBASIC-1.94□□□□□ -2.72
MSH2P43246 RNU6-520P-201ENST00000384717 104 ntBASIC-1.95□□□□□ -2.72
MSH2P43246 SNORD114-3-201ENST00000364969 75 ntBASIC-1.96□□□□□ -2.72
MSH2P43246 AC013734.1-201ENST00000619329 111 ntBASIC-1.96□□□□□ -2.72
MSH2P43246 RNU6-471P-201ENST00000383944 106 ntBASIC-1.97□□□□□ -2.72
MSH2P43246 RNU6-695P-201ENST00000391157 104 ntBASIC-1.98□□□□□ -2.73
MSH2P43246 Y_RNA.232-201ENST00000364369 96 ntBASIC-2.01□□□□□ -2.73
MSH2P43246 Y_RNA.442-201ENST00000384131 102 ntBASIC-2.01□□□□□ -2.73
MSH2P43246 Y_RNA.175-201ENST00000363794 111 ntBASIC-2.02□□□□□ -2.73
MSH2P43246 RNU6-1296P-201ENST00000383879 107 ntBASIC-2.03□□□□□ -2.73
MSH2P43246 Y_RNA.616-201ENST00000410835 95 ntBASIC-2.03□□□□□ -2.73
MSH2P43246 SNORD45.2-201ENST00000363552 72 ntBASIC-2.04□□□□□ -2.74
MSH2P43246 U6.97-201ENST00000636904 101 ntBASIC-2.04□□□□□ -2.74
Retrieved 100 of 98,524 protein–RNA pairs in 244.8 ms