Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 RNU6-79P-201ENST00000362511 107 ntBASIC-1.23□□□□□ -2.61
SHMT1P34896 MIR548AA1-201ENST00000384971 97 ntBASIC-1.23□□□□□ -2.61
SHMT1P34896 SNORD30.1-201ENST00000391309 70 ntBASIC-1.24□□□□□ -2.61
SHMT1P34896 AC138207.3-201ENST00000585289 166 ntBASIC-1.24□□□□□ -2.61
SHMT1P34896 RNU6-92P-201ENST00000605893 104 ntBASIC-1.24□□□□□ -2.61
SHMT1P34896 MIR4662A-201ENST00000637499 67 ntBASIC-1.24□□□□□ -2.61
SHMT1P34896 Y_RNA.685-201ENST00000516532 108 ntBASIC-1.25□□□□□ -2.61
SHMT1P34896 MIR4520-1-201ENST00000582609 70 ntBASIC-1.25□□□□□ -2.61
SHMT1P34896 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.26□□□□□ -2.61
SHMT1P34896 HLA-S-202ENST00000425174 53 ntBASIC-1.26□□□□□ -2.61
SHMT1P34896 MIR5591-201ENST00000578248 65 ntBASIC-1.26□□□□□ -2.61
SHMT1P34896 MIR7978-201ENST00000636158 59 ntBASIC-1.26□□□□□ -2.61
SHMT1P34896 SNORA25.4-201ENST00000363666 124 ntBASIC-1.27□□□□□ -2.61
SHMT1P34896 RNA5SP461-201ENST00000516451 104 ntBASIC-1.27□□□□□ -2.61
SHMT1P34896 RNU7-151P-201ENST00000516930 53 ntBASIC-1.27□□□□□ -2.61
SHMT1P34896 RNU6-649P-201ENST00000384463 107 ntBASIC-1.28□□□□□ -2.61
SHMT1P34896 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.29□□□□□ -2.62
SHMT1P34896 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.29□□□□□ -2.62
SHMT1P34896 MIR125B1-201ENST00000385236 88 ntBASIC-1.29□□□□□ -2.62
SHMT1P34896 RNU6-172P-201ENST00000411000 93 ntBASIC-1.29□□□□□ -2.62
SHMT1P34896 MIR1468-201ENST00000410600 86 ntBASIC-1.3□□□□□ -2.62
SHMT1P34896 AC018880.2-201ENST00000414265 201 ntBASIC-1.3□□□□□ -2.62
SHMT1P34896 MIR198-201ENST00000637333 62 ntBASIC-1.3□□□□□ -2.62
SHMT1P34896 RNU6-563P-201ENST00000364872 108 ntBASIC-1.31□□□□□ -2.62
SHMT1P34896 MIR579-201ENST00000385221 98 ntBASIC-1.31□□□□□ -2.62
SHMT1P34896 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.31□□□□□ -2.62
SHMT1P34896 RNU6-539P-201ENST00000516665 103 ntBASIC-1.31□□□□□ -2.62
SHMT1P34896 SNORD60.1-201ENST00000362451 73 ntBASIC-1.32□□□□□ -2.62
SHMT1P34896 RNU6-226P-201ENST00000363778 107 ntBASIC-1.32□□□□□ -2.62
SHMT1P34896 RNU6-776P-201ENST00000364403 104 ntBASIC-1.32□□□□□ -2.62
SHMT1P34896 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.32□□□□□ -2.62
SHMT1P34896 RNU6-669P-201ENST00000365575 107 ntBASIC-1.32□□□□□ -2.62
SHMT1P34896 MIR4770-201ENST00000579149 58 ntBASIC-1.32□□□□□ -2.62
SHMT1P34896 RNU6-974P-201ENST00000384099 108 ntBASIC-1.33□□□□□ -2.62
SHMT1P34896 MIR601-201ENST00000385256 79 ntBASIC-1.34□□□□□ -2.62
SHMT1P34896 RNU6-400P-201ENST00000391173 106 ntBASIC-1.34□□□□□ -2.62
SHMT1P34896 RNU6-995P-201ENST00000391244 107 ntBASIC-1.34□□□□□ -2.62
SHMT1P34896 AC120024.2-201ENST00000576526 175 ntBASIC-1.34□□□□□ -2.62
SHMT1P34896 AC005520.4-201ENST00000604337 90 ntBASIC-1.34□□□□□ -2.62
SHMT1P34896 U6.111-201ENST00000636093 83 ntBASIC-1.34□□□□□ -2.62
SHMT1P34896 MIR23C-201ENST00000579846 100 ntBASIC-1.35□□□□□ -2.63
SHMT1P34896 Y_RNA.565-201ENST00000384719 101 ntBASIC-1.36□□□□□ -2.63
SHMT1P34896 SNORA72.7-201ENST00000516349 94 ntBASIC-1.36□□□□□ -2.63
SHMT1P34896 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.36□□□□□ -2.63
SHMT1P34896 RNA5SP86-201ENST00000390869 98 ntBASIC-1.37□□□□□ -2.63
SHMT1P34896 SNORD63.2-201ENST00000516303 64 ntBASIC-1.37□□□□□ -2.63
SHMT1P34896 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.37□□□□□ -2.63
SHMT1P34896 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.37□□□□□ -2.63
SHMT1P34896 RNU6-247P-201ENST00000362636 107 ntBASIC-1.38□□□□□ -2.63
SHMT1P34896 SNORA25.5-201ENST00000363782 126 ntBASIC-1.38□□□□□ -2.63
SHMT1P34896 AC103706.3-201ENST00000636297 85 ntBASIC-1.38□□□□□ -2.63
SHMT1P34896 SNORA27.2-201ENST00000363365 126 ntBASIC-1.39□□□□□ -2.63
SHMT1P34896 MIR4511-201ENST00000582784 87 ntBASIC-1.39□□□□□ -2.63
SHMT1P34896 AC013734.1-201ENST00000619329 111 ntBASIC-1.39□□□□□ -2.63
SHMT1P34896 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.4□□□□□ -2.63
SHMT1P34896 RNU6-231P-201ENST00000517122 103 ntBASIC-1.4□□□□□ -2.63
SHMT1P34896 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.41□□□□□ -2.64
SHMT1P34896 RNU6-1275P-201ENST00000391087 107 ntBASIC-1.41□□□□□ -2.64
SHMT1P34896 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.41□□□□□ -2.64
SHMT1P34896 RNU7-160P-201ENST00000516660 62 ntBASIC-1.41□□□□□ -2.64
SHMT1P34896 MIR487B-201ENST00000385021 84 ntBASIC-1.42□□□□□ -2.64
SHMT1P34896 MIR548H1-201ENST00000408610 102 ntBASIC-1.42□□□□□ -2.64
SHMT1P34896 RNU6-122P-201ENST00000516818 107 ntBASIC-1.42□□□□□ -2.64
SHMT1P34896 MIR7110-201ENST00000612638 86 ntBASIC-1.42□□□□□ -2.64
SHMT1P34896 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.42□□□□□ -2.64
SHMT1P34896 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.43□□□□□ -2.64
SHMT1P34896 RNY3P8-201ENST00000411366 126 ntBASIC-1.43□□□□□ -2.64
SHMT1P34896 RNU6-810P-201ENST00000364001 107 ntBASIC-1.44□□□□□ -2.64
SHMT1P34896 RNU6-800P-201ENST00000384473 103 ntBASIC-1.44□□□□□ -2.64
SHMT1P34896 RNU6-695P-201ENST00000391157 104 ntBASIC-1.44□□□□□ -2.64
SHMT1P34896 SNORA40.16-201ENST00000517238 121 ntBASIC-1.45□□□□□ -2.64
SHMT1P34896 MIR4723-201ENST00000585070 81 ntBASIC-1.46□□□□□ -2.64
SHMT1P34896 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.47□□□□□ -2.64
SHMT1P34896 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.48□□□□□ -2.65
SHMT1P34896 RNU6-940P-201ENST00000363433 104 ntBASIC-1.48□□□□□ -2.65
SHMT1P34896 MIR1285-2-201ENST00000408311 88 ntBASIC-1.48□□□□□ -2.65
SHMT1P34896 MIR3123-201ENST00000583417 75 ntBASIC-1.48□□□□□ -2.65
SHMT1P34896 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.49□□□□□ -2.65
SHMT1P34896 SNORA40B-201ENST00000385573 128 ntBASIC-1.49□□□□□ -2.65
SHMT1P34896 SNORD116.2-201ENST00000391251 93 ntBASIC-1.49□□□□□ -2.65
SHMT1P34896 RNU6-828P-201ENST00000364876 107 ntBASIC-1.5□□□□□ -2.65
SHMT1P34896 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.5□□□□□ -2.65
SHMT1P34896 MIR581-201ENST00000384895 96 ntBASIC-1.5□□□□□ -2.65
SHMT1P34896 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.5□□□□□ -2.65
SHMT1P34896 MIR1246-201ENST00000636535 73 ntBASIC-1.5□□□□□ -2.65
SHMT1P34896 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.51□□□□□ -2.65
SHMT1P34896 SNORD18.1-201ENST00000363807 70 ntBASIC-1.52□□□□□ -2.65
SHMT1P34896 RNU6-520P-201ENST00000384717 104 ntBASIC-1.52□□□□□ -2.65
SHMT1P34896 RNU7-119P-201ENST00000459279 63 ntBASIC-1.52□□□□□ -2.65
SHMT1P34896 RNA5SP180-201ENST00000516181 101 ntBASIC-1.52□□□□□ -2.65
SHMT1P34896 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.53□□□□□ -2.65
SHMT1P34896 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.53□□□□□ -2.65
SHMT1P34896 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.53□□□□□ -2.65
SHMT1P34896 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.53□□□□□ -2.65
SHMT1P34896 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.53□□□□□ -2.65
SHMT1P34896 U6.97-201ENST00000636904 101 ntBASIC-1.53□□□□□ -2.65
SHMT1P34896 RNU6-841P-201ENST00000383872 107 ntBASIC-1.55□□□□□ -2.66
SHMT1P34896 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.55□□□□□ -2.66
SHMT1P34896 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.55□□□□□ -2.66
SHMT1P34896 AC114801.3-201ENST00000510231 177 ntBASIC-1.55□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms