Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 RNU6-141P-201ENST00000410499 105 ntBASIC-3.34□□□□□ -2.94
LIMS3P0CW19 Y_RNA.313-201ENST00000365095 103 ntBASIC-3.36□□□□□ -2.95
LIMS3P0CW19 Y_RNA.349-201ENST00000365406 102 ntBASIC-3.36□□□□□ -2.95
LIMS3P0CW19 Y_RNA.443-201ENST00000384135 111 ntBASIC-3.36□□□□□ -2.95
LIMS3P0CW19 MALAT1.1-201ENST00000618249 95 ntBASIC-3.36□□□□□ -2.95
LIMS3P0CW19 RNU6-230P-201ENST00000362457 104 ntBASIC-3.37□□□□□ -2.95
LIMS3P0CW19 AC006160.2-201ENST00000637708 154 ntBASIC-3.37□□□□□ -2.95
LIMS3P0CW19 Y_RNA.261-201ENST00000364631 102 ntBASIC-3.38□□□□□ -2.95
LIMS3P0CW19 Y_RNA.519-201ENST00000384553 102 ntBASIC-3.38□□□□□ -2.95
LIMS3P0CW19 RNU6-589P-201ENST00000516485 107 ntBASIC-3.38□□□□□ -2.95
LIMS3P0CW19 Y_RNA.291-201ENST00000364886 113 ntBASIC-3.39□□□□□ -2.95
LIMS3P0CW19 SNORD60-201ENST00000383903 83 ntBASIC-3.39□□□□□ -2.95
LIMS3P0CW19 Y_RNA.397-201ENST00000383950 98 ntBASIC-3.39□□□□□ -2.95
LIMS3P0CW19 RNU7-160P-201ENST00000516660 62 ntBASIC-3.39□□□□□ -2.95
LIMS3P0CW19 RNU6-789P-201ENST00000517105 102 ntBASIC-3.39□□□□□ -2.95
LIMS3P0CW19 Y_RNA.139-201ENST00000363464 102 ntBASIC-3.4□□□□□ -2.95
LIMS3P0CW19 AC008267.6-201ENST00000441664 139 ntBASIC-3.4□□□□□ -2.95
LIMS3P0CW19 AL031737.1-201ENST00000450125 223 ntBASIC-3.4□□□□□ -2.95
LIMS3P0CW19 RNY1P1-201ENST00000364372 112 ntBASIC-3.41□□□□□ -2.96
LIMS3P0CW19 MIR581-201ENST00000384895 96 ntBASIC-3.41□□□□□ -2.96
LIMS3P0CW19 SNORA40.13-201ENST00000516379 120 ntBASIC-3.41□□□□□ -2.96
LIMS3P0CW19 SNX3P1Y-201ENST00000615757 176 ntBASIC-3.41□□□□□ -2.96
LIMS3P0CW19 RNU6-520P-201ENST00000384717 104 ntBASIC-3.42□□□□□ -2.96
LIMS3P0CW19 AP001318.4-201ENST00000616637 121 ntBASIC-3.42□□□□□ -2.96
LIMS3P0CW19 Y_RNA.273-201ENST00000364703 102 ntBASIC-3.43□□□□□ -2.96
LIMS3P0CW19 Y_RNA.629-201ENST00000411368 105 ntBASIC-3.43□□□□□ -2.96
LIMS3P0CW19 MIR664A-201ENST00000626086 82 ntBASIC-3.43□□□□□ -2.96
LIMS3P0CW19 RNU6-315P-201ENST00000362666 107 ntBASIC-3.44□□□□□ -2.96
LIMS3P0CW19 RNU6-974P-201ENST00000384099 108 ntBASIC-3.44□□□□□ -2.96
LIMS3P0CW19 RNU6-1056P-201ENST00000383996 107 ntBASIC-3.45□□□□□ -2.96
LIMS3P0CW19 SNORD113-3-201ENST00000364830 72 ntBASIC-3.46□□□□□ -2.96
LIMS3P0CW19 RNU6-828P-201ENST00000364876 107 ntBASIC-3.46□□□□□ -2.96
LIMS3P0CW19 MIRLET7A2-201ENST00000362105 72 ntBASIC-3.47□□□□□ -2.96
LIMS3P0CW19 RNU6-834P-201ENST00000362367 110 ntBASIC-3.47□□□□□ -2.96
LIMS3P0CW19 RNU6-895P-201ENST00000384125 103 ntBASIC-3.47□□□□□ -2.96
LIMS3P0CW19 RNU6-675P-201ENST00000384236 104 ntBASIC-3.47□□□□□ -2.96
LIMS3P0CW19 RNU6-1079P-201ENST00000362861 110 ntBASIC-3.48□□□□□ -2.97
LIMS3P0CW19 RNU6-959P-201ENST00000384671 107 ntBASIC-3.48□□□□□ -2.97
LIMS3P0CW19 Y_RNA.607-201ENST00000410597 98 ntBASIC-3.48□□□□□ -2.97
LIMS3P0CW19 MIR450A1-201ENST00000362262 91 ntBASIC-3.49□□□□□ -2.97
LIMS3P0CW19 Y_RNA.69-201ENST00000362885 109 ntBASIC-3.49□□□□□ -2.97
LIMS3P0CW19 RNU6-649P-201ENST00000384463 107 ntBASIC-3.49□□□□□ -2.97
LIMS3P0CW19 RNU6-1241P-201ENST00000384536 107 ntBASIC-3.49□□□□□ -2.97
LIMS3P0CW19 MIR202-201ENST00000362219 110 ntBASIC-3.5□□□□□ -2.97
LIMS3P0CW19 MIR548N-201ENST00000408742 75 ntBASIC-3.5□□□□□ -2.97
LIMS3P0CW19 SNORD116-24-201ENST00000384549 92 ntBASIC-3.51□□□□□ -2.97
LIMS3P0CW19 MIR154-201ENST00000385243 84 ntBASIC-3.51□□□□□ -2.97
LIMS3P0CW19 RNU6-542P-201ENST00000516405 103 ntBASIC-3.51□□□□□ -2.97
LIMS3P0CW19 RNU6-92P-201ENST00000605893 104 ntBASIC-3.51□□□□□ -2.97
LIMS3P0CW19 Y_RNA.709-201ENST00000516952 92 ntBASIC-3.52□□□□□ -2.97
LIMS3P0CW19 MIR7110-201ENST00000612638 86 ntBASIC-3.52□□□□□ -2.97
LIMS3P0CW19 RNU6-1324P-201ENST00000384222 107 ntBASIC-3.54□□□□□ -2.98
LIMS3P0CW19 Y_RNA.703-201ENST00000516846 111 ntBASIC-3.54□□□□□ -2.98
LIMS3P0CW19 Y_RNA.59-201ENST00000362828 102 ntBASIC-3.55□□□□□ -2.98
LIMS3P0CW19 SNORA17.4-201ENST00000391287 132 ntBASIC-3.55□□□□□ -2.98
LIMS3P0CW19 RNU6-844P-201ENST00000517175 102 ntBASIC-3.55□□□□□ -2.98
LIMS3P0CW19 RNU6-70P-201ENST00000516438 60 ntBASIC-3.57□□□□□ -2.98
LIMS3P0CW19 AL365222.1-201ENST00000614661 98 ntBASIC-3.57□□□□□ -2.98
LIMS3P0CW19 MIR548AI-201ENST00000579940 88 ntBASIC-3.58□□□□□ -2.98
LIMS3P0CW19 RNU6-361P-201ENST00000364454 107 ntBASIC-3.59□□□□□ -2.98
LIMS3P0CW19 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-3.59□□□□□ -2.98
LIMS3P0CW19 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-3.59□□□□□ -2.98
LIMS3P0CW19 MIR3133-201ENST00000583157 78 ntBASIC-3.6□□□□□ -2.99
LIMS3P0CW19 RNU6-810P-201ENST00000364001 107 ntBASIC-3.61□□□□□ -2.99
LIMS3P0CW19 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-3.61□□□□□ -2.99
LIMS3P0CW19 RNU6-1206P-201ENST00000516339 103 ntBASIC-3.62□□□□□ -2.99
LIMS3P0CW19 Y_RNA.316-201ENST00000365118 111 ntBASIC-3.63□□□□□ -2.99
LIMS3P0CW19 MIR488-201ENST00000365739 83 ntBASIC-3.63□□□□□ -2.99
LIMS3P0CW19 RNU6-231P-201ENST00000517122 103 ntBASIC-3.63□□□□□ -2.99
LIMS3P0CW19 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-3.63□□□□□ -2.99
LIMS3P0CW19 SNORD60.1-201ENST00000362451 73 ntBASIC-3.64□□□□□ -2.99
LIMS3P0CW19 Y_RNA.658-201ENST00000515990 97 ntBASIC-3.64□□□□□ -2.99
LIMS3P0CW19 RNU6-803P-201ENST00000516034 102 ntBASIC-3.64□□□□□ -2.99
LIMS3P0CW19 snoMBII-202.2-201ENST00000517263 86 ntBASIC-3.64□□□□□ -2.99
LIMS3P0CW19 Y_RNA.17-201ENST00000362433 111 ntBASIC-3.65□□□□□ -2.99
LIMS3P0CW19 MIR379-201ENST00000362218 67 ntBASIC-3.66□□□□□ -3
LIMS3P0CW19 SNORD116.2-201ENST00000391251 93 ntBASIC-3.66□□□□□ -3
LIMS3P0CW19 MIR5693-201ENST00000577722 73 ntBASIC-3.66□□□□□ -3
LIMS3P0CW19 RNU6-1121P-201ENST00000516802 109 ntBASIC-3.67□□□□□ -3
LIMS3P0CW19 SNORD45.2-201ENST00000363552 72 ntBASIC-3.68□□□□□ -3
LIMS3P0CW19 RNU6-81P-201ENST00000365608 104 ntBASIC-3.68□□□□□ -3
LIMS3P0CW19 Y_RNA.566-201ENST00000384735 101 ntBASIC-3.68□□□□□ -3
LIMS3P0CW19 IGLL4P-201ENST00000614590 133 ntBASIC-3.68□□□□□ -3
LIMS3P0CW19 RNU6-912P-201ENST00000363800 104 ntBASIC-3.69□□□□□ -3
LIMS3P0CW19 RNU6-1134P-201ENST00000365156 101 ntBASIC-3.69□□□□□ -3
LIMS3P0CW19 TMSB4XP3-201ENST00000445144 114 ntBASIC-3.69□□□□□ -3
LIMS3P0CW19 RNU6-68P-201ENST00000516576 104 ntBASIC-3.69□□□□□ -3
LIMS3P0CW19 SNORA40B-201ENST00000385573 128 ntBASIC-3.7□□□□□ -3
LIMS3P0CW19 RNU6-1168P-201ENST00000390831 104 ntBASIC-3.7□□□□□ -3
LIMS3P0CW19 RNU6-530P-201ENST00000391180 107 ntBASIC-3.7□□□□□ -3
LIMS3P0CW19 MIR5588-201ENST00000581890 63 ntBASIC-3.7□□□□□ -3
LIMS3P0CW19 RNU6-1277P-201ENST00000364561 107 ntBASIC-3.71□□□□□ -3
LIMS3P0CW19 RNU6-640P-201ENST00000363693 105 ntBASIC-3.72□□□□□ -3
LIMS3P0CW19 MIR4712-201ENST00000583750 82 ntBASIC-3.72□□□□□ -3
LIMS3P0CW19 Y_RNA.73-201ENST00000362910 113 ntBASIC-3.73□□□□□ -3.01
LIMS3P0CW19 RNU6-1296P-201ENST00000383879 107 ntBASIC-3.73□□□□□ -3.01
LIMS3P0CW19 RNU6-32P-201ENST00000383948 107 ntBASIC-3.73□□□□□ -3.01
LIMS3P0CW19 RNU6-13P-201ENST00000384248 107 ntBASIC-3.73□□□□□ -3.01
LIMS3P0CW19 RNU6-12P-201ENST00000384604 107 ntBASIC-3.73□□□□□ -3.01
LIMS3P0CW19 RNU6-41P-201ENST00000384741 107 ntBASIC-3.73□□□□□ -3.01
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms