Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 RNU4-37P-201ENST00000410214 84 ntBASIC-0.66□□□□□ -2.52
NPHP3-ACAD11A0A0J9YXS1 AL451105.1-201ENST00000450005 189 ntBASIC-0.66□□□□□ -2.52
NPHP3-ACAD11A0A0J9YXS1 MIR4802-201ENST00000581881 80 ntBASIC-0.66□□□□□ -2.52
NPHP3-ACAD11A0A0J9YXS1 AP001180.6-201ENST00000584918 159 ntBASIC-0.66□□□□□ -2.52
NPHP3-ACAD11A0A0J9YXS1 MIR147A-201ENST00000385079 72 ntBASIC-0.67□□□□□ -2.52
NPHP3-ACAD11A0A0J9YXS1 MIR5589-201ENST00000579442 60 ntBASIC-0.67□□□□□ -2.52
NPHP3-ACAD11A0A0J9YXS1 SNORA27.2-201ENST00000363365 126 ntBASIC-0.68□□□□□ -2.52
NPHP3-ACAD11A0A0J9YXS1 RNU6-431P-201ENST00000383874 107 ntBASIC-0.68□□□□□ -2.52
NPHP3-ACAD11A0A0J9YXS1 RPL35AP4-201ENST00000412007 102 ntBASIC-0.68□□□□□ -2.52
NPHP3-ACAD11A0A0J9YXS1 RNU6-808P-201ENST00000391233 108 ntBASIC-0.69□□□□□ -2.52
NPHP3-ACAD11A0A0J9YXS1 MIR1468-201ENST00000410600 86 ntBASIC-0.69□□□□□ -2.52
NPHP3-ACAD11A0A0J9YXS1 SNORD64-201ENST00000386683 67 ntBASIC-0.7□□□□□ -2.52
NPHP3-ACAD11A0A0J9YXS1 SNORD45.2-201ENST00000363552 72 ntBASIC-0.72□□□□□ -2.52
NPHP3-ACAD11A0A0J9YXS1 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.72□□□□□ -2.52
NPHP3-ACAD11A0A0J9YXS1 MIR101-1-201ENST00000362265 75 ntBASIC-0.74□□□□□ -2.53
NPHP3-ACAD11A0A0J9YXS1 RNU6-141P-201ENST00000410499 105 ntBASIC-0.74□□□□□ -2.53
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.379-201ENST00000365653 102 ntBASIC-0.75□□□□□ -2.53
NPHP3-ACAD11A0A0J9YXS1 MIR4636-201ENST00000582271 80 ntBASIC-0.75□□□□□ -2.53
NPHP3-ACAD11A0A0J9YXS1 MIR4493-201ENST00000584016 73 ntBASIC-0.75□□□□□ -2.53
NPHP3-ACAD11A0A0J9YXS1 RNA5SP26-201ENST00000362406 119 ntBASIC-0.76□□□□□ -2.53
NPHP3-ACAD11A0A0J9YXS1 SNORD114-25-201ENST00000363742 72 ntBASIC-0.76□□□□□ -2.53
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.603-201ENST00000410571 108 ntBASIC-0.76□□□□□ -2.53
NPHP3-ACAD11A0A0J9YXS1 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.76□□□□□ -2.53
NPHP3-ACAD11A0A0J9YXS1 RNA5SP451-201ENST00000410588 110 ntBASIC-0.77□□□□□ -2.53
NPHP3-ACAD11A0A0J9YXS1 RNU6-753P-201ENST00000363926 107 ntBASIC-0.78□□□□□ -2.53
NPHP3-ACAD11A0A0J9YXS1 RNU6-530P-201ENST00000391180 107 ntBASIC-0.79□□□□□ -2.54
NPHP3-ACAD11A0A0J9YXS1 AC090616.4-201ENST00000448026 115 ntBASIC-0.79□□□□□ -2.54
NPHP3-ACAD11A0A0J9YXS1 MIR382-201ENST00000637119 76 ntBASIC-0.79□□□□□ -2.54
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.81□□□□□ -2.54
NPHP3-ACAD11A0A0J9YXS1 MIR604-201ENST00000384880 94 ntBASIC-0.81□□□□□ -2.54
NPHP3-ACAD11A0A0J9YXS1 MIR29B1-201ENST00000385015 81 ntBASIC-0.81□□□□□ -2.54
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.374-201ENST00000365606 101 ntBASIC-0.82□□□□□ -2.54
NPHP3-ACAD11A0A0J9YXS1 snoU83B.1-201ENST00000517136 88 ntBASIC-0.84□□□□□ -2.54
NPHP3-ACAD11A0A0J9YXS1 RNU6-35P-201ENST00000384530 107 ntBASIC-0.85□□□□□ -2.55
NPHP3-ACAD11A0A0J9YXS1 MIR6818-201ENST00000621576 65 ntBASIC-0.85□□□□□ -2.55
NPHP3-ACAD11A0A0J9YXS1 RNY3P8-201ENST00000411366 126 ntBASIC-0.86□□□□□ -2.55
NPHP3-ACAD11A0A0J9YXS1 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.86□□□□□ -2.55
NPHP3-ACAD11A0A0J9YXS1 RNU6-758P-201ENST00000516292 89 ntBASIC-0.86□□□□□ -2.55
NPHP3-ACAD11A0A0J9YXS1 MIR23C-201ENST00000579846 100 ntBASIC-0.86□□□□□ -2.55
NPHP3-ACAD11A0A0J9YXS1 Z95118.1-201ENST00000421372 247 ntBASIC-0.87□□□□□ -2.55
NPHP3-ACAD11A0A0J9YXS1 MIR196A1-201ENST00000388006 70 ntBASIC-0.88□□□□□ -2.55
NPHP3-ACAD11A0A0J9YXS1 RNU4-88P-201ENST00000411220 86 ntBASIC-0.89□□□□□ -2.55
NPHP3-ACAD11A0A0J9YXS1 MIR3681-201ENST00000580089 72 ntBASIC-0.89□□□□□ -2.55
NPHP3-ACAD11A0A0J9YXS1 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-0.89□□□□□ -2.55
NPHP3-ACAD11A0A0J9YXS1 MIR224-201ENST00000384889 81 ntBASIC-0.9□□□□□ -2.55
NPHP3-ACAD11A0A0J9YXS1 MT-TQ-201ENST00000387372 72 ntBASIC-0.9□□□□□ -2.55
NPHP3-ACAD11A0A0J9YXS1 AL500527.2-201ENST00000454105 95 ntBASIC-0.9□□□□□ -2.55
NPHP3-ACAD11A0A0J9YXS1 MIR202-201ENST00000362219 110 ntBASIC-0.92□□□□□ -2.56
NPHP3-ACAD11A0A0J9YXS1 RNA5SP368-201ENST00000364298 116 ntBASIC-0.92□□□□□ -2.56
NPHP3-ACAD11A0A0J9YXS1 RNU6-742P-201ENST00000365289 107 ntBASIC-0.92□□□□□ -2.56
NPHP3-ACAD11A0A0J9YXS1 RNU6-838P-201ENST00000363399 108 ntBASIC-0.93□□□□□ -2.56
NPHP3-ACAD11A0A0J9YXS1 RNU6-361P-201ENST00000364454 107 ntBASIC-0.93□□□□□ -2.56
NPHP3-ACAD11A0A0J9YXS1 SNORD83B-201ENST00000386745 93 ntBASIC-0.94□□□□□ -2.56
NPHP3-ACAD11A0A0J9YXS1 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.94□□□□□ -2.56
NPHP3-ACAD11A0A0J9YXS1 MIR4426-201ENST00000640330 63 ntBASIC-0.94□□□□□ -2.56
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.95□□□□□ -2.56
NPHP3-ACAD11A0A0J9YXS1 RNU4-63P-201ENST00000411313 118 ntBASIC-0.95□□□□□ -2.56
NPHP3-ACAD11A0A0J9YXS1 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-0.95□□□□□ -2.56
NPHP3-ACAD11A0A0J9YXS1 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.95□□□□□ -2.56
NPHP3-ACAD11A0A0J9YXS1 RNU6-930P-201ENST00000390938 100 ntBASIC-0.96□□□□□ -2.56
NPHP3-ACAD11A0A0J9YXS1 AC120024.2-201ENST00000576526 175 ntBASIC-0.96□□□□□ -2.56
NPHP3-ACAD11A0A0J9YXS1 MIR548AL-201ENST00000578416 97 ntBASIC-0.96□□□□□ -2.56
NPHP3-ACAD11A0A0J9YXS1 RNU6-164P-201ENST00000364604 103 ntBASIC-0.98□□□□□ -2.57
NPHP3-ACAD11A0A0J9YXS1 SNORA17.4-201ENST00000391287 132 ntBASIC-0.98□□□□□ -2.57
NPHP3-ACAD11A0A0J9YXS1 RNU6-563P-201ENST00000364872 108 ntBASIC-0.99□□□□□ -2.57
NPHP3-ACAD11A0A0J9YXS1 AC018880.2-201ENST00000414265 201 ntBASIC-0.99□□□□□ -2.57
NPHP3-ACAD11A0A0J9YXS1 RNU7-134P-201ENST00000458997 64 ntBASIC-0.99□□□□□ -2.57
NPHP3-ACAD11A0A0J9YXS1 SCARNA17-201ENST00000516183 144 ntBASIC-0.99□□□□□ -2.57
NPHP3-ACAD11A0A0J9YXS1 AC013734.1-201ENST00000619329 111 ntBASIC-0.99□□□□□ -2.57
NPHP3-ACAD11A0A0J9YXS1 SNORD95.1-201ENST00000364099 68 ntBASIC-1.01□□□□□ -2.57
NPHP3-ACAD11A0A0J9YXS1 SNORD60-201ENST00000383903 83 ntBASIC-1.01□□□□□ -2.57
NPHP3-ACAD11A0A0J9YXS1 MIR548F3-201ENST00000408509 87 ntBASIC-1.02□□□□□ -2.57
NPHP3-ACAD11A0A0J9YXS1 RNA5SP25-201ENST00000410815 110 ntBASIC-1.02□□□□□ -2.57
NPHP3-ACAD11A0A0J9YXS1 RNY1P9-201ENST00000532431 109 ntBASIC-1.03□□□□□ -2.57
NPHP3-ACAD11A0A0J9YXS1 RNU6-576P-201ENST00000390854 102 ntBASIC-1.04□□□□□ -2.58
NPHP3-ACAD11A0A0J9YXS1 MIR4499-201ENST00000584834 69 ntBASIC-1.04□□□□□ -2.58
NPHP3-ACAD11A0A0J9YXS1 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.05□□□□□ -2.58
NPHP3-ACAD11A0A0J9YXS1 uc_338.19-201ENST00000616808 99 ntBASIC-1.05□□□□□ -2.58
NPHP3-ACAD11A0A0J9YXS1 RNU6-300P-201ENST00000459080 104 ntBASIC-1.06□□□□□ -2.58
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.06□□□□□ -2.58
NPHP3-ACAD11A0A0J9YXS1 RNU6-79P-201ENST00000362511 107 ntBASIC-1.07□□□□□ -2.58
NPHP3-ACAD11A0A0J9YXS1 MIR548N-201ENST00000408742 75 ntBASIC-1.07□□□□□ -2.58
NPHP3-ACAD11A0A0J9YXS1 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.08□□□□□ -2.58
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.610-201ENST00000410681 103 ntBASIC-1.08□□□□□ -2.58
NPHP3-ACAD11A0A0J9YXS1 U6.97-201ENST00000636904 101 ntBASIC-1.08□□□□□ -2.58
NPHP3-ACAD11A0A0J9YXS1 MIR6086-201ENST00000638065 55 ntBASIC-1.08□□□□□ -2.58
NPHP3-ACAD11A0A0J9YXS1 RNU6-1204P-201ENST00000363948 107 ntBASIC-1.09□□□□□ -2.58
NPHP3-ACAD11A0A0J9YXS1 SNORD114-15-201ENST00000364687 72 ntBASIC-1.1□□□□□ -2.59
NPHP3-ACAD11A0A0J9YXS1 RNU6-176P-201ENST00000517196 105 ntBASIC-1.11□□□□□ -2.59
NPHP3-ACAD11A0A0J9YXS1 MIR378F-201ENST00000578143 78 ntBASIC-1.11□□□□□ -2.59
NPHP3-ACAD11A0A0J9YXS1 MIR6874-201ENST00000635894 71 ntBASIC-1.11□□□□□ -2.59
NPHP3-ACAD11A0A0J9YXS1 AC091912.2-201ENST00000624798 167 ntBASIC-1.12□□□□□ -2.59
NPHP3-ACAD11A0A0J9YXS1 MIR581-201ENST00000384895 96 ntBASIC-1.13□□□□□ -2.59
NPHP3-ACAD11A0A0J9YXS1 MIR548H4-201ENST00000408689 111 ntBASIC-1.15□□□□□ -2.59
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.16□□□□□ -2.6
NPHP3-ACAD11A0A0J9YXS1 MIR4324-201ENST00000584846 72 ntBASIC-1.16□□□□□ -2.6
NPHP3-ACAD11A0A0J9YXS1 MIR545-201ENST00000385085 106 ntBASIC-1.17□□□□□ -2.6
NPHP3-ACAD11A0A0J9YXS1 MIR4317-201ENST00000637586 65 ntBASIC-1.17□□□□□ -2.6
NPHP3-ACAD11A0A0J9YXS1 RNU6-986P-201ENST00000363133 102 ntBASIC-1.18□□□□□ -2.6
NPHP3-ACAD11A0A0J9YXS1 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.18□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 265.8 ms