Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 Y_RNA.375-201ENST00000365625 101 ntBASIC-0.59□□□□□ -2.5
UPF3AQ9H1J1 RNU6-895P-201ENST00000384125 103 ntBASIC-0.59□□□□□ -2.5
UPF3AQ9H1J1 RNU6-1275P-201ENST00000391087 107 ntBASIC-0.6□□□□□ -2.51
UPF3AQ9H1J1 Y_RNA.685-201ENST00000516532 108 ntBASIC-0.6□□□□□ -2.51
UPF3AQ9H1J1 RNY1P9-201ENST00000532431 109 ntBASIC-0.6□□□□□ -2.51
UPF3AQ9H1J1 RNU6-924P-201ENST00000362926 108 ntBASIC-0.61□□□□□ -2.51
UPF3AQ9H1J1 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.61□□□□□ -2.51
UPF3AQ9H1J1 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.61□□□□□ -2.51
UPF3AQ9H1J1 Y_RNA.545-201ENST00000384652 105 ntBASIC-0.62□□□□□ -2.51
UPF3AQ9H1J1 SNORD113-2-201ENST00000391082 72 ntBASIC-0.62□□□□□ -2.51
UPF3AQ9H1J1 U7.5-201ENST00000517224 61 ntBASIC-0.62□□□□□ -2.51
UPF3AQ9H1J1 MIR3681-201ENST00000580089 72 ntBASIC-0.62□□□□□ -2.51
UPF3AQ9H1J1 Y_RNA.109-201ENST00000363215 102 ntBASIC-0.63□□□□□ -2.51
UPF3AQ9H1J1 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.63□□□□□ -2.51
UPF3AQ9H1J1 SNORD114-17-201ENST00000364699 75 ntBASIC-0.63□□□□□ -2.51
UPF3AQ9H1J1 RNU6-458P-201ENST00000384179 107 ntBASIC-0.63□□□□□ -2.51
UPF3AQ9H1J1 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.63□□□□□ -2.51
UPF3AQ9H1J1 U6.58-201ENST00000613107 107 ntBASIC-0.63□□□□□ -2.51
UPF3AQ9H1J1 RNU7-88P-201ENST00000458752 63 ntBASIC-0.64□□□□□ -2.51
UPF3AQ9H1J1 SNORA41B-201ENST00000384785 128 ntBASIC-0.65□□□□□ -2.51
UPF3AQ9H1J1 MIR527-201ENST00000385244 85 ntBASIC-0.65□□□□□ -2.51
UPF3AQ9H1J1 Y_RNA.236-201ENST00000364427 111 ntBASIC-0.66□□□□□ -2.52
UPF3AQ9H1J1 Y_RNA.443-201ENST00000384135 111 ntBASIC-0.66□□□□□ -2.52
UPF3AQ9H1J1 RNU6-663P-201ENST00000391105 106 ntBASIC-0.66□□□□□ -2.52
UPF3AQ9H1J1 SNORA72.7-201ENST00000516349 94 ntBASIC-0.66□□□□□ -2.52
UPF3AQ9H1J1 RNU6-776P-201ENST00000364403 104 ntBASIC-0.67□□□□□ -2.52
UPF3AQ9H1J1 RNU6-1022P-201ENST00000365049 104 ntBASIC-0.67□□□□□ -2.52
UPF3AQ9H1J1 MT-TQ-201ENST00000387372 72 ntBASIC-0.67□□□□□ -2.52
UPF3AQ9H1J1 RNU6-732P-201ENST00000516033 103 ntBASIC-0.67□□□□□ -2.52
UPF3AQ9H1J1 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.67□□□□□ -2.52
UPF3AQ9H1J1 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.67□□□□□ -2.52
UPF3AQ9H1J1 RNU6-431P-201ENST00000383874 107 ntBASIC-0.68□□□□□ -2.52
UPF3AQ9H1J1 SNORA26.4-201ENST00000391188 123 ntBASIC-0.68□□□□□ -2.52
UPF3AQ9H1J1 SNORD63.1-201ENST00000516178 80 ntBASIC-0.68□□□□□ -2.52
UPF3AQ9H1J1 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.69□□□□□ -2.52
UPF3AQ9H1J1 RNU6-598P-201ENST00000364017 105 ntBASIC-0.69□□□□□ -2.52
UPF3AQ9H1J1 SNORD116-16-201ENST00000384533 92 ntBASIC-0.69□□□□□ -2.52
UPF3AQ9H1J1 Y_RNA.565-201ENST00000384719 101 ntBASIC-0.69□□□□□ -2.52
UPF3AQ9H1J1 MIR147A-201ENST00000385079 72 ntBASIC-0.69□□□□□ -2.52
UPF3AQ9H1J1 SNORD19-201ENST00000391191 68 ntBASIC-0.69□□□□□ -2.52
UPF3AQ9H1J1 RNU6-630P-201ENST00000391258 106 ntBASIC-0.7□□□□□ -2.52
UPF3AQ9H1J1 SNX3P1X-201ENST00000414887 175 ntBASIC-0.7□□□□□ -2.52
UPF3AQ9H1J1 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.7□□□□□ -2.52
UPF3AQ9H1J1 RNU6-542P-201ENST00000516405 103 ntBASIC-0.7□□□□□ -2.52
UPF3AQ9H1J1 AP002795.1-201ENST00000534879 84 ntBASIC-0.7□□□□□ -2.52
UPF3AQ9H1J1 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.71□□□□□ -2.52
UPF3AQ9H1J1 SNORD64-201ENST00000386683 67 ntBASIC-0.71□□□□□ -2.52
UPF3AQ9H1J1 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-0.71□□□□□ -2.52
UPF3AQ9H1J1 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.71□□□□□ -2.52
UPF3AQ9H1J1 SNORD115-33-201ENST00000363723 82 ntBASIC-0.72□□□□□ -2.52
UPF3AQ9H1J1 SNORD114-25-201ENST00000363742 72 ntBASIC-0.72□□□□□ -2.52
UPF3AQ9H1J1 MIR196A1-201ENST00000388006 70 ntBASIC-0.72□□□□□ -2.52
UPF3AQ9H1J1 SNORD30.1-201ENST00000391309 70 ntBASIC-0.72□□□□□ -2.52
UPF3AQ9H1J1 RNU6-1262P-201ENST00000516217 96 ntBASIC-0.72□□□□□ -2.52
UPF3AQ9H1J1 MIR4662A-201ENST00000637499 67 ntBASIC-0.72□□□□□ -2.52
UPF3AQ9H1J1 RNU6-696P-201ENST00000390834 107 ntBASIC-0.73□□□□□ -2.53
UPF3AQ9H1J1 MIR1468-201ENST00000410600 86 ntBASIC-0.73□□□□□ -2.53
UPF3AQ9H1J1 RNU6-871P-201ENST00000516122 100 ntBASIC-0.73□□□□□ -2.53
UPF3AQ9H1J1 AC005520.4-201ENST00000604337 90 ntBASIC-0.73□□□□□ -2.53
UPF3AQ9H1J1 U2.18-201ENST00000622185 84 ntBASIC-0.73□□□□□ -2.53
UPF3AQ9H1J1 SNORD1B-201ENST00000363091 84 ntBASIC-0.75□□□□□ -2.53
UPF3AQ9H1J1 SNORA25.4-201ENST00000363666 124 ntBASIC-0.75□□□□□ -2.53
UPF3AQ9H1J1 U6.111-201ENST00000636093 83 ntBASIC-0.75□□□□□ -2.53
UPF3AQ9H1J1 RNU6-649P-201ENST00000384463 107 ntBASIC-0.76□□□□□ -2.53
UPF3AQ9H1J1 AL500527.2-201ENST00000454105 95 ntBASIC-0.76□□□□□ -2.53
UPF3AQ9H1J1 RNU6-92P-201ENST00000605893 104 ntBASIC-0.76□□□□□ -2.53
UPF3AQ9H1J1 MIR429-201ENST00000362106 83 ntBASIC-0.77□□□□□ -2.53
UPF3AQ9H1J1 SCARNA17-201ENST00000516183 144 ntBASIC-0.77□□□□□ -2.53
UPF3AQ9H1J1 MIR382-201ENST00000637119 76 ntBASIC-0.77□□□□□ -2.53
UPF3AQ9H1J1 SNORD60.1-201ENST00000362451 73 ntBASIC-0.78□□□□□ -2.53
UPF3AQ9H1J1 AL353691.2-201ENST00000443795 59 ntBASIC-0.78□□□□□ -2.53
UPF3AQ9H1J1 RNU6-539P-201ENST00000516665 103 ntBASIC-0.78□□□□□ -2.53
UPF3AQ9H1J1 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.78□□□□□ -2.53
UPF3AQ9H1J1 SNORD83B-201ENST00000386745 93 ntBASIC-0.81□□□□□ -2.54
UPF3AQ9H1J1 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.81□□□□□ -2.54
UPF3AQ9H1J1 RNU6-638P-201ENST00000516582 104 ntBASIC-0.81□□□□□ -2.54
UPF3AQ9H1J1 MIR5683-201ENST00000636514 76 ntBASIC-0.81□□□□□ -2.54
UPF3AQ9H1J1 Y_RNA.386-201ENST00000383913 105 ntBASIC-0.82□□□□□ -2.54
UPF3AQ9H1J1 RNU6-800P-201ENST00000384473 103 ntBASIC-0.82□□□□□ -2.54
UPF3AQ9H1J1 MIR587-201ENST00000384845 96 ntBASIC-0.82□□□□□ -2.54
UPF3AQ9H1J1 MIR4511-201ENST00000582784 87 ntBASIC-0.82□□□□□ -2.54
UPF3AQ9H1J1 RNA5SP26-201ENST00000362406 119 ntBASIC-0.83□□□□□ -2.54
UPF3AQ9H1J1 SNORA25.5-201ENST00000363782 126 ntBASIC-0.83□□□□□ -2.54
UPF3AQ9H1J1 RNA5SP192-201ENST00000364404 120 ntBASIC-0.83□□□□□ -2.54
UPF3AQ9H1J1 MIR520D-201ENST00000385002 87 ntBASIC-0.83□□□□□ -2.54
UPF3AQ9H1J1 RNU6-1267P-201ENST00000410747 107 ntBASIC-0.83□□□□□ -2.54
UPF3AQ9H1J1 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.84□□□□□ -2.54
UPF3AQ9H1J1 MIR4723-201ENST00000585070 81 ntBASIC-0.84□□□□□ -2.54
UPF3AQ9H1J1 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-0.84□□□□□ -2.54
UPF3AQ9H1J1 MIR548Q-201ENST00000408404 100 ntBASIC-0.85□□□□□ -2.55
UPF3AQ9H1J1 RNU6-172P-201ENST00000411000 93 ntBASIC-0.85□□□□□ -2.55
UPF3AQ9H1J1 MIR4499-201ENST00000584834 69 ntBASIC-0.85□□□□□ -2.55
UPF3AQ9H1J1 RNU6-1296P-201ENST00000383879 107 ntBASIC-0.86□□□□□ -2.55
UPF3AQ9H1J1 RNU6-122P-201ENST00000516818 107 ntBASIC-0.86□□□□□ -2.55
UPF3AQ9H1J1 AC103706.3-201ENST00000636297 85 ntBASIC-0.86□□□□□ -2.55
UPF3AQ9H1J1 MIR548AA1-201ENST00000384971 97 ntBASIC-0.87□□□□□ -2.55
UPF3AQ9H1J1 MIR507-201ENST00000385234 94 ntBASIC-0.87□□□□□ -2.55
UPF3AQ9H1J1 AC114801.3-201ENST00000510231 177 ntBASIC-0.87□□□□□ -2.55
UPF3AQ9H1J1 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.88□□□□□ -2.55
UPF3AQ9H1J1 RNU7-151P-201ENST00000516930 53 ntBASIC-0.88□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 8 ms