Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RNA5SP63-201ENST00000391225 112 ntBASIC0.14□□□□□ -2.39
CLIP3Q96DZ5 RNU6-1206P-201ENST00000516339 103 ntBASIC0.14□□□□□ -2.39
CLIP3Q96DZ5 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.13□□□□□ -2.39
CLIP3Q96DZ5 RNU6-901P-201ENST00000384593 106 ntBASIC0.13□□□□□ -2.39
CLIP3Q96DZ5 SNORD63.1-201ENST00000516178 80 ntBASIC0.13□□□□□ -2.39
CLIP3Q96DZ5 RNU6-46P-201ENST00000383860 107 ntBASIC0.12□□□□□ -2.39
CLIP3Q96DZ5 MIR124-2-201ENST00000385081 109 ntBASIC0.12□□□□□ -2.39
CLIP3Q96DZ5 MTRNR2L9-201ENST00000622562 75 ntBASIC0.12□□□□□ -2.39
CLIP3Q96DZ5 MIR4290-201ENST00000583807 95 ntBASIC0.11□□□□□ -2.39
CLIP3Q96DZ5 MIR6718-201ENST00000616153 80 ntBASIC0.11□□□□□ -2.39
CLIP3Q96DZ5 SNORD49B-201ENST00000365172 72 ntBASIC0.1□□□□□ -2.39
CLIP3Q96DZ5 RNU6-995P-201ENST00000391244 107 ntBASIC0.1□□□□□ -2.39
CLIP3Q96DZ5 RNU6-732P-201ENST00000516033 103 ntBASIC0.1□□□□□ -2.39
CLIP3Q96DZ5 RNU6-1238P-201ENST00000517215 102 ntBASIC0.1□□□□□ -2.39
CLIP3Q96DZ5 AL590491.3-201ENST00000610731 82 ntBASIC0.1□□□□□ -2.39
CLIP3Q96DZ5 Y_RNA.30-201ENST00000362572 97 ntBASIC0.09□□□□□ -2.4
CLIP3Q96DZ5 MIR6851-201ENST00000617060 67 ntBASIC0.09□□□□□ -2.4
CLIP3Q96DZ5 RNU6-974P-201ENST00000384099 108 ntBASIC0.08□□□□□ -2.4
CLIP3Q96DZ5 SNORD19-201ENST00000391191 68 ntBASIC0.08□□□□□ -2.4
CLIP3Q96DZ5 AL445193.1-201ENST00000441183 141 ntBASIC0.08□□□□□ -2.4
CLIP3Q96DZ5 MIR3170-201ENST00000582699 77 ntBASIC0.08□□□□□ -2.4
CLIP3Q96DZ5 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.08□□□□□ -2.4
CLIP3Q96DZ5 Y_RNA.139-201ENST00000363464 102 ntBASIC0.07□□□□□ -2.4
CLIP3Q96DZ5 RNU6-828P-201ENST00000364876 107 ntBASIC0.07□□□□□ -2.4
CLIP3Q96DZ5 SNORD38.3-201ENST00000516599 73 ntBASIC0.07□□□□□ -2.4
CLIP3Q96DZ5 MIR2909-201ENST00000617113 69 ntBASIC0.07□□□□□ -2.4
CLIP3Q96DZ5 MIR329-2-201ENST00000385029 84 ntBASIC0.06□□□□□ -2.4
CLIP3Q96DZ5 DLEU2_4.2-201ENST00000616613 58 ntBASIC0.06□□□□□ -2.4
CLIP3Q96DZ5 RNA5SP257-201ENST00000363023 116 ntBASIC0.05□□□□□ -2.4
CLIP3Q96DZ5 SNORD114-16-201ENST00000363044 70 ntBASIC0.05□□□□□ -2.4
CLIP3Q96DZ5 MIR548F3-201ENST00000408509 87 ntBASIC0.05□□□□□ -2.4
CLIP3Q96DZ5 MIR371B-201ENST00000638082 66 ntBASIC0.05□□□□□ -2.4
CLIP3Q96DZ5 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC0.04□□□□□ -2.4
CLIP3Q96DZ5 RNU6-930P-201ENST00000390938 100 ntBASIC0.04□□□□□ -2.4
CLIP3Q96DZ5 AL451105.1-201ENST00000450005 189 ntBASIC0.04□□□□□ -2.4
CLIP3Q96DZ5 MIR4768-201ENST00000585270 74 ntBASIC0.04□□□□□ -2.4
CLIP3Q96DZ5 MIR520D-201ENST00000385002 87 ntBASIC0.03□□□□□ -2.4
CLIP3Q96DZ5 AP002795.1-201ENST00000534879 84 ntBASIC0.03□□□□□ -2.4
CLIP3Q96DZ5 RNU6-1233P-201ENST00000362922 102 ntBASIC0.02□□□□□ -2.41
CLIP3Q96DZ5 RNU6-838P-201ENST00000363399 108 ntBASIC0.02□□□□□ -2.41
CLIP3Q96DZ5 RNA5SP66-201ENST00000517178 101 ntBASIC0.02□□□□□ -2.41
CLIP3Q96DZ5 MIR5190-201ENST00000581537 80 ntBASIC0.02□□□□□ -2.41
CLIP3Q96DZ5 SNORD74.6-201ENST00000364796 70 ntBASIC0.01□□□□□ -2.41
CLIP3Q96DZ5 RNU6-258P-201ENST00000390884 101 ntBASIC0.01□□□□□ -2.41
CLIP3Q96DZ5 AC104692.1-201ENST00000472406 90 ntBASIC0.01□□□□□ -2.41
CLIP3Q96DZ5 SNORD63.2-201ENST00000516303 64 ntBASIC0.01□□□□□ -2.41
CLIP3Q96DZ5 MIR4667-201ENST00000578933 66 ntBASIC-0.01□□□□□ -2.41
CLIP3Q96DZ5 AC093726.3-201ENST00000637588 150 ntBASIC-0.01□□□□□ -2.41
CLIP3Q96DZ5 SNORA18.1-201ENST00000363418 128 ntBASIC-0.02□□□□□ -2.41
CLIP3Q96DZ5 Y_RNA.374-201ENST00000365606 101 ntBASIC-0.02□□□□□ -2.41
CLIP3Q96DZ5 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.02□□□□□ -2.41
CLIP3Q96DZ5 SNORD22.1-201ENST00000516331 125 ntBASIC-0.02□□□□□ -2.41
CLIP3Q96DZ5 SNORD114-12-201ENST00000365400 75 ntBASIC-0.03□□□□□ -2.41
CLIP3Q96DZ5 MIR518B-201ENST00000385127 83 ntBASIC-0.03□□□□□ -2.41
CLIP3Q96DZ5 RNU6-1111P-201ENST00000391118 107 ntBASIC-0.03□□□□□ -2.41
CLIP3Q96DZ5 SNORA26.4-201ENST00000391188 123 ntBASIC-0.03□□□□□ -2.41
CLIP3Q96DZ5 MIR548Q-201ENST00000408404 100 ntBASIC-0.03□□□□□ -2.41
CLIP3Q96DZ5 SNORD18.2-201ENST00000459604 70 ntBASIC-0.03□□□□□ -2.41
CLIP3Q96DZ5 MIR29B1-201ENST00000385015 81 ntBASIC-0.04□□□□□ -2.42
CLIP3Q96DZ5 RNA5SP169-201ENST00000517268 117 ntBASIC-0.04□□□□□ -2.42
CLIP3Q96DZ5 MIR3666-201ENST00000607845 111 ntBASIC-0.04□□□□□ -2.42
CLIP3Q96DZ5 RNU6-247P-201ENST00000362636 107 ntBASIC-0.05□□□□□ -2.42
CLIP3Q96DZ5 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.05□□□□□ -2.42
CLIP3Q96DZ5 MIR1295B-201ENST00000636144 60 ntBASIC-0.05□□□□□ -2.42
CLIP3Q96DZ5 SNORD115-33-201ENST00000363723 82 ntBASIC-0.06□□□□□ -2.42
CLIP3Q96DZ5 SNORD114-11-201ENST00000363738 75 ntBASIC-0.06□□□□□ -2.42
CLIP3Q96DZ5 MIR4263-201ENST00000584745 83 ntBASIC-0.06□□□□□ -2.42
CLIP3Q96DZ5 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.07□□□□□ -2.42
CLIP3Q96DZ5 SNORA32.1-201ENST00000364514 115 ntBASIC-0.07□□□□□ -2.42
CLIP3Q96DZ5 Y_RNA.321-201ENST00000365149 102 ntBASIC-0.07□□□□□ -2.42
CLIP3Q96DZ5 SNORD75.1-201ENST00000408373 60 ntBASIC-0.07□□□□□ -2.42
CLIP3Q96DZ5 SNORD4A-201ENST00000459174 72 ntBASIC-0.07□□□□□ -2.42
CLIP3Q96DZ5 MIR548AL-201ENST00000578416 97 ntBASIC-0.07□□□□□ -2.42
CLIP3Q96DZ5 RNA5SP300-201ENST00000391197 107 ntBASIC-0.08□□□□□ -2.42
CLIP3Q96DZ5 MIR1468-201ENST00000410600 86 ntBASIC-0.08□□□□□ -2.42
CLIP3Q96DZ5 AL353691.2-201ENST00000443795 59 ntBASIC-0.08□□□□□ -2.42
CLIP3Q96DZ5 MIR5683-201ENST00000636514 76 ntBASIC-0.08□□□□□ -2.42
CLIP3Q96DZ5 RNU6-608P-201ENST00000383927 104 ntBASIC-0.09□□□□□ -2.42
CLIP3Q96DZ5 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.09□□□□□ -2.42
CLIP3Q96DZ5 MIR4788-201ENST00000639104 80 ntBASIC-0.09□□□□□ -2.42
CLIP3Q96DZ5 SNORA27.2-201ENST00000363365 126 ntBASIC-0.1□□□□□ -2.43
CLIP3Q96DZ5 SNORD45.2-201ENST00000363552 72 ntBASIC-0.1□□□□□ -2.43
CLIP3Q96DZ5 MIR545-201ENST00000385085 106 ntBASIC-0.1□□□□□ -2.43
CLIP3Q96DZ5 RNU6-721P-201ENST00000410155 105 ntBASIC-0.1□□□□□ -2.43
CLIP3Q96DZ5 AP000533.3-201ENST00000447704 118 ntBASIC-0.1□□□□□ -2.43
CLIP3Q96DZ5 SNORA13-201ENST00000458790 133 ntBASIC-0.1□□□□□ -2.43
CLIP3Q96DZ5 MIR3179-1-201ENST00000578940 84 ntBASIC-0.1□□□□□ -2.43
CLIP3Q96DZ5 MIR3179-2-201ENST00000579107 84 ntBASIC-0.1□□□□□ -2.43
CLIP3Q96DZ5 MIR3179-3-201ENST00000579566 84 ntBASIC-0.1□□□□□ -2.43
CLIP3Q96DZ5 MIR3179-4-201ENST00000617599 84 ntBASIC-0.1□□□□□ -2.43
CLIP3Q96DZ5 SNORD114-17-201ENST00000364699 75 ntBASIC-0.11□□□□□ -2.43
CLIP3Q96DZ5 RNU6-742P-201ENST00000365289 107 ntBASIC-0.12□□□□□ -2.43
CLIP3Q96DZ5 RNU6-530P-201ENST00000391180 107 ntBASIC-0.12□□□□□ -2.43
CLIP3Q96DZ5 Y_RNA.699-201ENST00000516803 93 ntBASIC-0.12□□□□□ -2.43
CLIP3Q96DZ5 RNA5SP285-201ENST00000516619 119 ntBASIC-0.13□□□□□ -2.43
CLIP3Q96DZ5 RNU6-986P-201ENST00000363133 102 ntBASIC-0.14□□□□□ -2.43
CLIP3Q96DZ5 MIR204-201ENST00000385200 110 ntBASIC-0.14□□□□□ -2.43
CLIP3Q96DZ5 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.15□□□□□ -2.43
CLIP3Q96DZ5 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.17□□□□□ -2.44
CLIP3Q96DZ5 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.17□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 472 ms