Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SNORD113-2-201ENST00000391082 72 ntBASIC-0.57□□□□□ -2.5
ZNF540Q8NDQ6 SNORA26.4-201ENST00000391188 123 ntBASIC-0.57□□□□□ -2.5
ZNF540Q8NDQ6 SNORD19-201ENST00000391191 68 ntBASIC-0.57□□□□□ -2.5
ZNF540Q8NDQ6 AL500527.2-201ENST00000454105 95 ntBASIC-0.57□□□□□ -2.5
ZNF540Q8NDQ6 RNU7-88P-201ENST00000458752 63 ntBASIC-0.57□□□□□ -2.5
ZNF540Q8NDQ6 RNU6-732P-201ENST00000516033 103 ntBASIC-0.57□□□□□ -2.5
ZNF540Q8NDQ6 U7.4-201ENST00000614961 63 ntBASIC-0.57□□□□□ -2.5
ZNF540Q8NDQ6 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.58□□□□□ -2.5
ZNF540Q8NDQ6 SNORA41B-201ENST00000384785 128 ntBASIC-0.58□□□□□ -2.5
ZNF540Q8NDQ6 RNU6-634P-201ENST00000459134 106 ntBASIC-0.58□□□□□ -2.5
ZNF540Q8NDQ6 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.58□□□□□ -2.5
ZNF540Q8NDQ6 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.58□□□□□ -2.5
ZNF540Q8NDQ6 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.58□□□□□ -2.5
ZNF540Q8NDQ6 SNORD114-25-201ENST00000363742 72 ntBASIC-0.59□□□□□ -2.5
ZNF540Q8NDQ6 RNU6-24P-201ENST00000384440 107 ntBASIC-0.59□□□□□ -2.5
ZNF540Q8NDQ6 SNORD115-33-201ENST00000363723 82 ntBASIC-0.6□□□□□ -2.51
ZNF540Q8NDQ6 RNU6-598P-201ENST00000364017 105 ntBASIC-0.6□□□□□ -2.51
ZNF540Q8NDQ6 MIR382-201ENST00000637119 76 ntBASIC-0.6□□□□□ -2.51
ZNF540Q8NDQ6 SNORD95.1-201ENST00000364099 68 ntBASIC-0.61□□□□□ -2.51
ZNF540Q8NDQ6 Y_RNA.236-201ENST00000364427 111 ntBASIC-0.61□□□□□ -2.51
ZNF540Q8NDQ6 SNORD116-16-201ENST00000384533 92 ntBASIC-0.61□□□□□ -2.51
ZNF540Q8NDQ6 MIR527-201ENST00000385244 85 ntBASIC-0.61□□□□□ -2.51
ZNF540Q8NDQ6 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.61□□□□□ -2.51
ZNF540Q8NDQ6 RNU6-895P-201ENST00000384125 103 ntBASIC-0.62□□□□□ -2.51
ZNF540Q8NDQ6 RNU6-30P-201ENST00000384561 107 ntBASIC-0.62□□□□□ -2.51
ZNF540Q8NDQ6 MIR889-201ENST00000401280 79 ntBASIC-0.62□□□□□ -2.51
ZNF540Q8NDQ6 RNU6-696P-201ENST00000390834 107 ntBASIC-0.63□□□□□ -2.51
ZNF540Q8NDQ6 RNU4-63P-201ENST00000411313 118 ntBASIC-0.63□□□□□ -2.51
ZNF540Q8NDQ6 SNORD57-201ENST00000448188 72 ntBASIC-0.63□□□□□ -2.51
ZNF540Q8NDQ6 RNU6-1262P-201ENST00000516217 96 ntBASIC-0.63□□□□□ -2.51
ZNF540Q8NDQ6 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.63□□□□□ -2.51
ZNF540Q8NDQ6 U2.18-201ENST00000622185 84 ntBASIC-0.63□□□□□ -2.51
ZNF540Q8NDQ6 Y_RNA.443-201ENST00000384135 111 ntBASIC-0.64□□□□□ -2.51
ZNF540Q8NDQ6 Y_RNA.545-201ENST00000384652 105 ntBASIC-0.64□□□□□ -2.51
ZNF540Q8NDQ6 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.64□□□□□ -2.51
ZNF540Q8NDQ6 SNORD1B-201ENST00000363091 84 ntBASIC-0.65□□□□□ -2.51
ZNF540Q8NDQ6 RNU6-1275P-201ENST00000391087 107 ntBASIC-0.65□□□□□ -2.51
ZNF540Q8NDQ6 AL353691.2-201ENST00000443795 59 ntBASIC-0.65□□□□□ -2.51
ZNF540Q8NDQ6 RNA5SP26-201ENST00000362406 119 ntBASIC-0.66□□□□□ -2.52
ZNF540Q8NDQ6 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.66□□□□□ -2.52
ZNF540Q8NDQ6 MIR196A1-201ENST00000388006 70 ntBASIC-0.66□□□□□ -2.52
ZNF540Q8NDQ6 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-0.66□□□□□ -2.52
ZNF540Q8NDQ6 RNU6-663P-201ENST00000391105 106 ntBASIC-0.66□□□□□ -2.52
ZNF540Q8NDQ6 RNU6-542P-201ENST00000516405 103 ntBASIC-0.66□□□□□ -2.52
ZNF540Q8NDQ6 MIR520D-201ENST00000385002 87 ntBASIC-0.67□□□□□ -2.52
ZNF540Q8NDQ6 RNU7-134P-201ENST00000458997 64 ntBASIC-0.67□□□□□ -2.52
ZNF540Q8NDQ6 Y_RNA.685-201ENST00000516532 108 ntBASIC-0.67□□□□□ -2.52
ZNF540Q8NDQ6 MIR29B1-201ENST00000385015 81 ntBASIC-0.68□□□□□ -2.52
ZNF540Q8NDQ6 MIR5683-201ENST00000636514 76 ntBASIC-0.68□□□□□ -2.52
ZNF540Q8NDQ6 RNU6-630P-201ENST00000391258 106 ntBASIC-0.69□□□□□ -2.52
ZNF540Q8NDQ6 MIR4499-201ENST00000584834 69 ntBASIC-0.69□□□□□ -2.52
ZNF540Q8NDQ6 AC005520.4-201ENST00000604337 90 ntBASIC-0.69□□□□□ -2.52
ZNF540Q8NDQ6 MIR6818-201ENST00000621576 65 ntBASIC-0.69□□□□□ -2.52
ZNF540Q8NDQ6 MIR429-201ENST00000362106 83 ntBASIC-0.7□□□□□ -2.52
ZNF540Q8NDQ6 SNORD60.1-201ENST00000362451 73 ntBASIC-0.7□□□□□ -2.52
ZNF540Q8NDQ6 RNU6-776P-201ENST00000364403 104 ntBASIC-0.7□□□□□ -2.52
ZNF540Q8NDQ6 RNU6-1022P-201ENST00000365049 104 ntBASIC-0.7□□□□□ -2.52
ZNF540Q8NDQ6 RNU6-92P-201ENST00000605893 104 ntBASIC-0.7□□□□□ -2.52
ZNF540Q8NDQ6 SNORA25.4-201ENST00000363666 124 ntBASIC-0.71□□□□□ -2.52
ZNF540Q8NDQ6 Y_RNA.565-201ENST00000384719 101 ntBASIC-0.71□□□□□ -2.52
ZNF540Q8NDQ6 MT-TQ-201ENST00000387372 72 ntBASIC-0.71□□□□□ -2.52
ZNF540Q8NDQ6 RNU6-1267P-201ENST00000410747 107 ntBASIC-0.71□□□□□ -2.52
ZNF540Q8NDQ6 RNA5SP67-201ENST00000516422 131 ntBASIC-0.71□□□□□ -2.52
ZNF540Q8NDQ6 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-0.71□□□□□ -2.52
ZNF540Q8NDQ6 MTRNR2L9-201ENST00000622562 75 ntBASIC-0.71□□□□□ -2.52
ZNF540Q8NDQ6 RNU6-608P-201ENST00000383927 104 ntBASIC-0.72□□□□□ -2.52
ZNF540Q8NDQ6 MIR3681-201ENST00000580089 72 ntBASIC-0.72□□□□□ -2.52
ZNF540Q8NDQ6 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.72□□□□□ -2.52
ZNF540Q8NDQ6 U6.111-201ENST00000636093 83 ntBASIC-0.72□□□□□ -2.52
ZNF540Q8NDQ6 MIR507-201ENST00000385234 94 ntBASIC-0.73□□□□□ -2.53
ZNF540Q8NDQ6 SNORD30.1-201ENST00000391309 70 ntBASIC-0.73□□□□□ -2.53
ZNF540Q8NDQ6 snoU83B.1-201ENST00000517136 88 ntBASIC-0.73□□□□□ -2.53
ZNF540Q8NDQ6 Y_RNA.386-201ENST00000383913 105 ntBASIC-0.74□□□□□ -2.53
ZNF540Q8NDQ6 RNU6-258P-201ENST00000390884 101 ntBASIC-0.74□□□□□ -2.53
ZNF540Q8NDQ6 MIR548Q-201ENST00000408404 100 ntBASIC-0.74□□□□□ -2.53
ZNF540Q8NDQ6 RNU6-172P-201ENST00000411000 93 ntBASIC-0.74□□□□□ -2.53
ZNF540Q8NDQ6 RPL35AP4-201ENST00000412007 102 ntBASIC-0.74□□□□□ -2.53
ZNF540Q8NDQ6 RNU6-871P-201ENST00000516122 100 ntBASIC-0.74□□□□□ -2.53
ZNF540Q8NDQ6 MIR3170-201ENST00000582699 77 ntBASIC-0.74□□□□□ -2.53
ZNF540Q8NDQ6 uc_338.19-201ENST00000616808 99 ntBASIC-0.74□□□□□ -2.53
ZNF540Q8NDQ6 MIR7978-201ENST00000636158 59 ntBASIC-0.74□□□□□ -2.53
ZNF540Q8NDQ6 RNU6-649P-201ENST00000384463 107 ntBASIC-0.75□□□□□ -2.53
ZNF540Q8NDQ6 MIR548AA1-201ENST00000384971 97 ntBASIC-0.75□□□□□ -2.53
ZNF540Q8NDQ6 SNORD83B-201ENST00000386745 93 ntBASIC-0.75□□□□□ -2.53
ZNF540Q8NDQ6 AC090616.4-201ENST00000448026 115 ntBASIC-0.75□□□□□ -2.53
ZNF540Q8NDQ6 RNU6-539P-201ENST00000516665 103 ntBASIC-0.75□□□□□ -2.53
ZNF540Q8NDQ6 MIR4511-201ENST00000582784 87 ntBASIC-0.75□□□□□ -2.53
ZNF540Q8NDQ6 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.75□□□□□ -2.53
ZNF540Q8NDQ6 SNORA25.5-201ENST00000363782 126 ntBASIC-0.76□□□□□ -2.53
ZNF540Q8NDQ6 RNA5SP192-201ENST00000364404 120 ntBASIC-0.76□□□□□ -2.53
ZNF540Q8NDQ6 MIR125B1-201ENST00000385236 88 ntBASIC-0.76□□□□□ -2.53
ZNF540Q8NDQ6 RNU6-122P-201ENST00000516818 107 ntBASIC-0.76□□□□□ -2.53
ZNF540Q8NDQ6 RNU7-151P-201ENST00000516930 53 ntBASIC-0.76□□□□□ -2.53
ZNF540Q8NDQ6 RNY1P9-201ENST00000532431 109 ntBASIC-0.77□□□□□ -2.53
ZNF540Q8NDQ6 MIR4490-201ENST00000582647 84 ntBASIC-0.77□□□□□ -2.53
ZNF540Q8NDQ6 MIR4662A-201ENST00000637499 67 ntBASIC-0.77□□□□□ -2.53
ZNF540Q8NDQ6 MIR579-201ENST00000385221 98 ntBASIC-0.78□□□□□ -2.53
ZNF540Q8NDQ6 SCARNA17-201ENST00000516183 144 ntBASIC-0.78□□□□□ -2.53
ZNF540Q8NDQ6 SNORA72.7-201ENST00000516349 94 ntBASIC-0.78□□□□□ -2.53
ZNF540Q8NDQ6 RNU6-800P-201ENST00000384473 103 ntBASIC-0.79□□□□□ -2.54
Retrieved 100 of 98,524 protein–RNA pairs in 178.9 ms