Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 MIR655-201ENST00000362159 97 ntBASIC0.25□□□□□ -2.37
EPHB3P54753 MIR548F3-201ENST00000408509 87 ntBASIC0.25□□□□□ -2.37
EPHB3P54753 AC023932.2-201ENST00000603176 175 ntBASIC0.25□□□□□ -2.37
EPHB3P54753 RNA5SP214-201ENST00000363378 118 ntBASIC0.24□□□□□ -2.37
EPHB3P54753 RNU6-838P-201ENST00000363399 108 ntBASIC0.24□□□□□ -2.37
EPHB3P54753 RNU6-901P-201ENST00000384593 106 ntBASIC0.24□□□□□ -2.37
EPHB3P54753 AC114755.3-201ENST00000481111 251 ntBASIC0.24□□□□□ -2.37
EPHB3P54753 AL451105.1-201ENST00000450005 189 ntBASIC0.23□□□□□ -2.37
EPHB3P54753 RNU6-732P-201ENST00000516033 103 ntBASIC0.23□□□□□ -2.37
EPHB3P54753 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.23□□□□□ -2.37
EPHB3P54753 SNORD114-9-201ENST00000364370 72 ntBASIC0.22□□□□□ -2.37
EPHB3P54753 MIR5093-201ENST00000583199 100 ntBASIC0.22□□□□□ -2.37
EPHB3P54753 MTRNR2L9-201ENST00000622562 75 ntBASIC0.22□□□□□ -2.37
EPHB3P54753 Y_RNA.139-201ENST00000363464 102 ntBASIC0.21□□□□□ -2.38
EPHB3P54753 RNU6-46P-201ENST00000383860 107 ntBASIC0.21□□□□□ -2.38
EPHB3P54753 RNU6-1238P-201ENST00000517215 102 ntBASIC0.21□□□□□ -2.38
EPHB3P54753 MIR6718-201ENST00000616153 80 ntBASIC0.21□□□□□ -2.38
EPHB3P54753 RNU6-247P-201ENST00000362636 107 ntBASIC0.2□□□□□ -2.38
EPHB3P54753 RNA5SP63-201ENST00000391225 112 ntBASIC0.2□□□□□ -2.38
EPHB3P54753 SNORD114-5-201ENST00000362928 70 ntBASIC0.19□□□□□ -2.38
EPHB3P54753 MIR4280-201ENST00000582178 76 ntBASIC0.19□□□□□ -2.38
EPHB3P54753 MIR3170-201ENST00000582699 77 ntBASIC0.19□□□□□ -2.38
EPHB3P54753 MIR124-2-201ENST00000385081 109 ntBASIC0.18□□□□□ -2.38
EPHB3P54753 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.18□□□□□ -2.38
EPHB3P54753 Y_RNA.68-201ENST00000362881 102 ntBASIC0.17□□□□□ -2.38
EPHB3P54753 RNU6-1233P-201ENST00000362922 102 ntBASIC0.16□□□□□ -2.38
EPHB3P54753 SNORD49B-201ENST00000365172 72 ntBASIC0.16□□□□□ -2.38
EPHB3P54753 MIR6851-201ENST00000617060 67 ntBASIC0.16□□□□□ -2.38
EPHB3P54753 RNU6-929P-201ENST00000384429 107 ntBASIC0.15□□□□□ -2.39
EPHB3P54753 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.15□□□□□ -2.39
EPHB3P54753 SNORD45.2-201ENST00000363552 72 ntBASIC0.14□□□□□ -2.39
EPHB3P54753 RNU6-974P-201ENST00000384099 108 ntBASIC0.14□□□□□ -2.39
EPHB3P54753 RNU6-1111P-201ENST00000391118 107 ntBASIC0.14□□□□□ -2.39
EPHB3P54753 MIR1295A-201ENST00000408463 79 ntBASIC0.14□□□□□ -2.39
EPHB3P54753 AL445193.1-201ENST00000441183 141 ntBASIC0.14□□□□□ -2.39
EPHB3P54753 SNORD63.2-201ENST00000516303 64 ntBASIC0.14□□□□□ -2.39
EPHB3P54753 Y_RNA.321-201ENST00000365149 102 ntBASIC0.13□□□□□ -2.39
EPHB3P54753 SNORD19-201ENST00000391191 68 ntBASIC0.13□□□□□ -2.39
EPHB3P54753 MIR4290-201ENST00000583807 95 ntBASIC0.13□□□□□ -2.39
EPHB3P54753 AC104692.1-201ENST00000472406 90 ntBASIC0.12□□□□□ -2.39
EPHB3P54753 MIR548AL-201ENST00000578416 97 ntBASIC0.12□□□□□ -2.39
EPHB3P54753 SNORD74.6-201ENST00000364796 70 ntBASIC0.11□□□□□ -2.39
EPHB3P54753 AL590491.3-201ENST00000610731 82 ntBASIC0.11□□□□□ -2.39
EPHB3P54753 SNORD38.3-201ENST00000516599 73 ntBASIC0.1□□□□□ -2.39
EPHB3P54753 RNA5SP66-201ENST00000517178 101 ntBASIC0.1□□□□□ -2.39
EPHB3P54753 MIR5190-201ENST00000581537 80 ntBASIC0.1□□□□□ -2.39
EPHB3P54753 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.1□□□□□ -2.39
EPHB3P54753 Y_RNA.178-201ENST00000363832 102 ntBASIC0.09□□□□□ -2.4
EPHB3P54753 MIR520D-201ENST00000385002 87 ntBASIC0.09□□□□□ -2.4
EPHB3P54753 MIR29B1-201ENST00000385015 81 ntBASIC0.08□□□□□ -2.4
EPHB3P54753 MIR545-201ENST00000385085 106 ntBASIC0.08□□□□□ -2.4
EPHB3P54753 MIR548Q-201ENST00000408404 100 ntBASIC0.08□□□□□ -2.4
EPHB3P54753 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC0.07□□□□□ -2.4
EPHB3P54753 SNORA26.4-201ENST00000391188 123 ntBASIC0.07□□□□□ -2.4
EPHB3P54753 RNU6-258P-201ENST00000390884 101 ntBASIC0.06□□□□□ -2.4
EPHB3P54753 MIR1468-201ENST00000410600 86 ntBASIC0.06□□□□□ -2.4
EPHB3P54753 RNA5SP285-201ENST00000516619 119 ntBASIC0.06□□□□□ -2.4
EPHB3P54753 AC093726.3-201ENST00000637588 150 ntBASIC0.06□□□□□ -2.4
EPHB3P54753 MIR518B-201ENST00000385127 83 ntBASIC0.05□□□□□ -2.4
EPHB3P54753 SNORD18.2-201ENST00000459604 70 ntBASIC0.05□□□□□ -2.4
EPHB3P54753 MIR4263-201ENST00000584745 83 ntBASIC0.05□□□□□ -2.4
EPHB3P54753 MIR1295B-201ENST00000636144 60 ntBASIC0.05□□□□□ -2.4
EPHB3P54753 SNORA18.1-201ENST00000363418 128 ntBASIC0.04□□□□□ -2.4
EPHB3P54753 SNORD115-33-201ENST00000363723 82 ntBASIC0.04□□□□□ -2.4
EPHB3P54753 Y_RNA.433-201ENST00000384089 102 ntBASIC0.04□□□□□ -2.4
EPHB3P54753 RNU6-1250P-201ENST00000391218 107 ntBASIC0.04□□□□□ -2.4
EPHB3P54753 MIR4667-201ENST00000578933 66 ntBASIC0.04□□□□□ -2.4
EPHB3P54753 SNORA27.2-201ENST00000363365 126 ntBASIC0.03□□□□□ -2.4
EPHB3P54753 AL353691.2-201ENST00000443795 59 ntBASIC0.03□□□□□ -2.4
EPHB3P54753 Y_RNA.699-201ENST00000516803 93 ntBASIC0.03□□□□□ -2.4
EPHB3P54753 AP002795.1-201ENST00000534879 84 ntBASIC0.03□□□□□ -2.4
EPHB3P54753 MIR4768-201ENST00000585270 74 ntBASIC0.03□□□□□ -2.4
EPHB3P54753 SNORA13-201ENST00000458790 133 ntBASIC0.02□□□□□ -2.41
EPHB3P54753 SNORD22.1-201ENST00000516331 125 ntBASIC0.02□□□□□ -2.41
EPHB3P54753 MIR3666-201ENST00000607845 111 ntBASIC0.02□□□□□ -2.41
EPHB3P54753 SNORD114-16-201ENST00000363044 70 ntBASIC0.01□□□□□ -2.41
EPHB3P54753 SNORD75.1-201ENST00000408373 60 ntBASIC0.01□□□□□ -2.41
EPHB3P54753 MIR5683-201ENST00000636514 76 ntBASIC0.01□□□□□ -2.41
EPHB3P54753 MIR371B-201ENST00000638082 66 ntBASIC0.01□□□□□ -2.41
EPHB3P54753 RNU6-1204P-201ENST00000363948 107 ntBASIC0□□□□□ -2.41
EPHB3P54753 SNORD114-12-201ENST00000365400 75 ntBASIC0□□□□□ -2.41
EPHB3P54753 RNU6-530P-201ENST00000391180 107 ntBASIC0□□□□□ -2.41
EPHB3P54753 MIR6759-201ENST00000638110 65 ntBASIC0□□□□□ -2.41
EPHB3P54753 RNU6-986P-201ENST00000363133 102 ntBASIC-0.02□□□□□ -2.41
EPHB3P54753 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.02□□□□□ -2.41
EPHB3P54753 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.03□□□□□ -2.41
EPHB3P54753 RNU6-742P-201ENST00000365289 107 ntBASIC-0.03□□□□□ -2.41
EPHB3P54753 RNU6-608P-201ENST00000383927 104 ntBASIC-0.03□□□□□ -2.41
EPHB3P54753 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.04□□□□□ -2.42
EPHB3P54753 SNORD4A-201ENST00000459174 72 ntBASIC-0.04□□□□□ -2.42
EPHB3P54753 MIR3179-1-201ENST00000578940 84 ntBASIC-0.04□□□□□ -2.42
EPHB3P54753 MIR3179-2-201ENST00000579107 84 ntBASIC-0.04□□□□□ -2.42
EPHB3P54753 MIR3179-3-201ENST00000579566 84 ntBASIC-0.04□□□□□ -2.42
EPHB3P54753 MIR3179-4-201ENST00000617599 84 ntBASIC-0.04□□□□□ -2.42
EPHB3P54753 RNA5SP300-201ENST00000391197 107 ntBASIC-0.05□□□□□ -2.42
EPHB3P54753 MIR4802-201ENST00000581881 80 ntBASIC-0.06□□□□□ -2.42
EPHB3P54753 MIR4788-201ENST00000639104 80 ntBASIC-0.06□□□□□ -2.42
EPHB3P54753 SNORD114-17-201ENST00000364699 75 ntBASIC-0.07□□□□□ -2.42
EPHB3P54753 MIR204-201ENST00000385200 110 ntBASIC-0.07□□□□□ -2.42
EPHB3P54753 MIR548H4-201ENST00000408689 111 ntBASIC-0.07□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms