Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.96□□□□□ -2.56
SHMT1P34896 MIR378F-201ENST00000578143 78 ntBASIC-0.96□□□□□ -2.56
SHMT1P34896 U7.4-201ENST00000614961 63 ntBASIC-0.96□□□□□ -2.56
SHMT1P34896 U4.4-201ENST00000620626 117 ntBASIC-0.96□□□□□ -2.56
SHMT1P34896 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.97□□□□□ -2.56
SHMT1P34896 Y_RNA.325-201ENST00000365171 122 ntBASIC-0.97□□□□□ -2.56
SHMT1P34896 MIR29B1-201ENST00000385015 81 ntBASIC-0.97□□□□□ -2.56
SHMT1P34896 RNU7-88P-201ENST00000458752 63 ntBASIC-0.97□□□□□ -2.56
SHMT1P34896 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.97□□□□□ -2.56
SHMT1P34896 MIR3134-201ENST00000579433 74 ntBASIC-0.97□□□□□ -2.56
SHMT1P34896 RNA5SP173-201ENST00000364857 136 ntBASIC-0.98□□□□□ -2.57
SHMT1P34896 SNORD57-201ENST00000448188 72 ntBASIC-0.98□□□□□ -2.57
SHMT1P34896 MIR6818-201ENST00000621576 65 ntBASIC-0.98□□□□□ -2.57
SHMT1P34896 Y_RNA.788-201ENST00000622394 112 ntBASIC-0.98□□□□□ -2.57
SHMT1P34896 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.98□□□□□ -2.57
SHMT1P34896 MIR429-201ENST00000362106 83 ntBASIC-0.99□□□□□ -2.57
SHMT1P34896 Y_RNA.282-201ENST00000364793 102 ntBASIC-0.99□□□□□ -2.57
SHMT1P34896 RNA5SP331-201ENST00000364986 107 ntBASIC-0.99□□□□□ -2.57
SHMT1P34896 RNU6-411P-201ENST00000384451 107 ntBASIC-0.99□□□□□ -2.57
SHMT1P34896 MIR1302-4-201ENST00000408701 150 ntBASIC-0.99□□□□□ -2.57
SHMT1P34896 RNY1P9-201ENST00000532431 109 ntBASIC-0.99□□□□□ -2.57
SHMT1P34896 Y_RNA.388-201ENST00000383919 113 ntBASIC-1□□□□□ -2.57
SHMT1P34896 RNU6-573P-201ENST00000383938 106 ntBASIC-1□□□□□ -2.57
SHMT1P34896 snoU83B.1-201ENST00000517136 88 ntBASIC-1□□□□□ -2.57
SHMT1P34896 MIR548V-201ENST00000584165 80 ntBASIC-1□□□□□ -2.57
SHMT1P34896 RNU6-458P-201ENST00000384179 107 ntBASIC-1.01□□□□□ -2.57
SHMT1P34896 MIR527-201ENST00000385244 85 ntBASIC-1.01□□□□□ -2.57
SHMT1P34896 SNORD113-2-201ENST00000391082 72 ntBASIC-1.01□□□□□ -2.57
SHMT1P34896 RNA5SP266-201ENST00000410273 108 ntBASIC-1.01□□□□□ -2.57
SHMT1P34896 AL353691.2-201ENST00000443795 59 ntBASIC-1.01□□□□□ -2.57
SHMT1P34896 RNU6-687P-201ENST00000516443 89 ntBASIC-1.01□□□□□ -2.57
SHMT1P34896 MIR4324-201ENST00000584846 72 ntBASIC-1.01□□□□□ -2.57
SHMT1P34896 U6.58-201ENST00000613107 107 ntBASIC-1.01□□□□□ -2.57
SHMT1P34896 RNU6-1124P-201ENST00000384169 107 ntBASIC-1.02□□□□□ -2.57
SHMT1P34896 MIR6738-201ENST00000619620 64 ntBASIC-1.02□□□□□ -2.57
SHMT1P34896 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.03□□□□□ -2.57
SHMT1P34896 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.03□□□□□ -2.57
SHMT1P34896 MIR630-201ENST00000384957 97 ntBASIC-1.04□□□□□ -2.58
SHMT1P34896 RNU6-598P-201ENST00000364017 105 ntBASIC-1.05□□□□□ -2.58
SHMT1P34896 SNORD115-31-201ENST00000365318 82 ntBASIC-1.05□□□□□ -2.58
SHMT1P34896 MIR5683-201ENST00000636514 76 ntBASIC-1.05□□□□□ -2.58
SHMT1P34896 RNU6-228P-201ENST00000362700 106 ntBASIC-1.06□□□□□ -2.58
SHMT1P34896 RNU6-24P-201ENST00000384440 107 ntBASIC-1.06□□□□□ -2.58
SHMT1P34896 SNORD116-24-201ENST00000384549 92 ntBASIC-1.06□□□□□ -2.58
SHMT1P34896 MIR1255A-201ENST00000408338 113 ntBASIC-1.06□□□□□ -2.58
SHMT1P34896 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.06□□□□□ -2.58
SHMT1P34896 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.07□□□□□ -2.58
SHMT1P34896 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.07□□□□□ -2.58
SHMT1P34896 RNU6-10P-201ENST00000384036 107 ntBASIC-1.07□□□□□ -2.58
SHMT1P34896 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.07□□□□□ -2.58
SHMT1P34896 MIR587-201ENST00000384845 96 ntBASIC-1.07□□□□□ -2.58
SHMT1P34896 RNU6-696P-201ENST00000390834 107 ntBASIC-1.07□□□□□ -2.58
SHMT1P34896 RNU6-279P-201ENST00000391297 101 ntBASIC-1.07□□□□□ -2.58
SHMT1P34896 MIR4306-201ENST00000583390 91 ntBASIC-1.07□□□□□ -2.58
SHMT1P34896 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.08□□□□□ -2.58
SHMT1P34896 MIR507-201ENST00000385234 94 ntBASIC-1.08□□□□□ -2.58
SHMT1P34896 MIR8485-201ENST00000401372 91 ntBASIC-1.08□□□□□ -2.58
SHMT1P34896 RNU6-857P-201ENST00000515893 110 ntBASIC-1.08□□□□□ -2.58
SHMT1P34896 MIR520D-201ENST00000385002 87 ntBASIC-1.09□□□□□ -2.58
SHMT1P34896 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.09□□□□□ -2.58
SHMT1P34896 SNORA41B-201ENST00000384785 128 ntBASIC-1.1□□□□□ -2.59
SHMT1P34896 SNORD78.1-201ENST00000390866 65 ntBASIC-1.1□□□□□ -2.59
SHMT1P34896 AC090616.4-201ENST00000448026 115 ntBASIC-1.1□□□□□ -2.59
SHMT1P34896 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.11□□□□□ -2.59
SHMT1P34896 RPL35AP4-201ENST00000412007 102 ntBASIC-1.11□□□□□ -2.59
SHMT1P34896 U2.18-201ENST00000622185 84 ntBASIC-1.11□□□□□ -2.59
SHMT1P34896 RNU6-608P-201ENST00000383927 104 ntBASIC-1.12□□□□□ -2.59
SHMT1P34896 SNORD116-16-201ENST00000384533 92 ntBASIC-1.12□□□□□ -2.59
SHMT1P34896 RNU6-634P-201ENST00000459134 106 ntBASIC-1.12□□□□□ -2.59
SHMT1P34896 MIR4679-1-201ENST00000637619 75 ntBASIC-1.12□□□□□ -2.59
SHMT1P34896 RNU6-542P-201ENST00000516405 103 ntBASIC-1.13□□□□□ -2.59
SHMT1P34896 RNU6-164P-201ENST00000364604 103 ntBASIC-1.14□□□□□ -2.59
SHMT1P34896 RNU6-630P-201ENST00000391258 106 ntBASIC-1.14□□□□□ -2.59
SHMT1P34896 MIR4490-201ENST00000582647 84 ntBASIC-1.14□□□□□ -2.59
SHMT1P34896 AC091912.2-201ENST00000624798 167 ntBASIC-1.14□□□□□ -2.59
SHMT1P34896 MIR889-201ENST00000401280 79 ntBASIC-1.15□□□□□ -2.59
SHMT1P34896 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.16□□□□□ -2.6
SHMT1P34896 MIR548Q-201ENST00000408404 100 ntBASIC-1.16□□□□□ -2.6
SHMT1P34896 SNX3P1X-201ENST00000414887 175 ntBASIC-1.16□□□□□ -2.6
SHMT1P34896 RNU6-871P-201ENST00000516122 100 ntBASIC-1.16□□□□□ -2.6
SHMT1P34896 MIR6874-201ENST00000635894 71 ntBASIC-1.16□□□□□ -2.6
SHMT1P34896 SNORD1B-201ENST00000363091 84 ntBASIC-1.17□□□□□ -2.6
SHMT1P34896 RNU6-576P-201ENST00000390854 102 ntBASIC-1.17□□□□□ -2.6
SHMT1P34896 RNU6-663P-201ENST00000391105 106 ntBASIC-1.18□□□□□ -2.6
SHMT1P34896 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.18□□□□□ -2.6
SHMT1P34896 MIR3115-201ENST00000577915 68 ntBASIC-1.18□□□□□ -2.6
SHMT1P34896 RNA5SP192-201ENST00000364404 120 ntBASIC-1.19□□□□□ -2.6
SHMT1P34896 RNU6-540P-201ENST00000384622 101 ntBASIC-1.19□□□□□ -2.6
SHMT1P34896 RNU6-706P-201ENST00000517229 104 ntBASIC-1.19□□□□□ -2.6
SHMT1P34896 MIR6502-201ENST00000617296 76 ntBASIC-1.19□□□□□ -2.6
SHMT1P34896 RNU6-258P-201ENST00000390884 101 ntBASIC-1.2□□□□□ -2.6
SHMT1P34896 MIR3170-201ENST00000582699 77 ntBASIC-1.2□□□□□ -2.6
SHMT1P34896 MIR4320-201ENST00000636981 65 ntBASIC-1.2□□□□□ -2.6
SHMT1P34896 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.21□□□□□ -2.6
SHMT1P34896 MIR3165-201ENST00000579874 75 ntBASIC-1.21□□□□□ -2.6
SHMT1P34896 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.21□□□□□ -2.6
SHMT1P34896 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.21□□□□□ -2.6
SHMT1P34896 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.22□□□□□ -2.6
SHMT1P34896 RNA5SP225-201ENST00000410874 135 ntBASIC-1.22□□□□□ -2.6
SHMT1P34896 RNU6-523P-201ENST00000516304 54 ntBASIC-1.22□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 8.3 ms